ISGsp1
- Family IS982
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ABLJ01000003 | ND | Geobacillus sp. | Geobacillus sp. WCH70 |
DNA section
IS Length : 1004 bp
Ends
IR Length : 14
IRL : ACCCGTGGTGCTAGATAAACTTGATCAAGCATAAAAATAGCCCTTGCTGG
IRR : ACCCGTGGTGCTAGTTGAGTGTCAGCGCTCAACCAGCCCTAGTGTGACCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAGTCTAAAT | GATAAAATA | ATAATGAAAT | 9 |
DNA sequence
ACCCGTGGTGCTAGATAAACTTGATCAAGCATAAAAATAGCCCTTGCTGGCGGATCTCCAGTAGAATGAAAGTGTCACCCAACATTCGAAAGGAGAGATC
CCCCATGCAAGAGCACTTTCATTTTACTACAGATCCAGCCAAACTTCAAAAACAATATGCCGCTATTTTCTGTTTTGTTTCTGCCCAACTGTCGTTGATT
CAAATGTATCTTCATCGCCGCAACCGTCACTTGGTCAAGCAAGAAGACGAAGTGGTCATGGCGGTTCACCTTTTGGGGAAGCTGCTGGGCTTTTCTTCCG
AACGAGCCTGGCATCGTTTTGTCACGGGAAATTTGTTCACAAACGGCTCGTTTCTTGAACGCTCCCGATACAACCGCCGCTGCCGGGCGCTTGGTTTCGC
CATCAAATGGATCCGTCATGAGCTGGCGAAACGTGGCCAACACCATGCTTATGCGGTCGTCGACAGCTTGCCTCTTCCGTTGTGCCATCCCGCAAGAATG
CAGCGCGTCAAGCGGTTTCGAGGGATCGCGGATATGGGGTATTGTGCTTCCAAAAAGCAATGGTACTACGGTTTCAAGCTGCATCTTCAAGTGACCAATC
AAGGGCTGGCCATGGGCTATGTCGTGACGGAAGCGTCCTGCCACGACGTCAAAGCCGCTGAAACGGTGATGACTCAAATCCCTCATCCCTACAACTTTGG
GGACAAAGGGTACATCAGCCACGCTCTTCGAGAAAAGCTGTACAAAGAACACCAAGCCGCGTTCTGGACACCGTCTCGACACAATCAAAAGCACGGCCCA
TCCAAGGCATGGGAAGAATGGATCAGGAAAAAACGCAAAGTCATCGAGACGGTGTTTTCGATTCTCGTAGACCAATACCGGATCACCGACATTCGAGCGA
ATTCCATGGCCGGGTTTGAAGTGGCACTCGATGGCATCTTGTTGGCTTATTCCTTGGTCACACTAGGGCTGGTTGAGCGCTGACACTCAACTAGCACCAC
GGGT
CCCCATGCAAGAGCACTTTCATTTTACTACAGATCCAGCCAAACTTCAAAAACAATATGCCGCTATTTTCTGTTTTGTTTCTGCCCAACTGTCGTTGATT
CAAATGTATCTTCATCGCCGCAACCGTCACTTGGTCAAGCAAGAAGACGAAGTGGTCATGGCGGTTCACCTTTTGGGGAAGCTGCTGGGCTTTTCTTCCG
AACGAGCCTGGCATCGTTTTGTCACGGGAAATTTGTTCACAAACGGCTCGTTTCTTGAACGCTCCCGATACAACCGCCGCTGCCGGGCGCTTGGTTTCGC
CATCAAATGGATCCGTCATGAGCTGGCGAAACGTGGCCAACACCATGCTTATGCGGTCGTCGACAGCTTGCCTCTTCCGTTGTGCCATCCCGCAAGAATG
CAGCGCGTCAAGCGGTTTCGAGGGATCGCGGATATGGGGTATTGTGCTTCCAAAAAGCAATGGTACTACGGTTTCAAGCTGCATCTTCAAGTGACCAATC
AAGGGCTGGCCATGGGCTATGTCGTGACGGAAGCGTCCTGCCACGACGTCAAAGCCGCTGAAACGGTGATGACTCAAATCCCTCATCCCTACAACTTTGG
GGACAAAGGGTACATCAGCCACGCTCTTCGAGAAAAGCTGTACAAAGAACACCAAGCCGCGTTCTGGACACCGTCTCGACACAATCAAAAGCACGGCCCA
TCCAAGGCATGGGAAGAATGGATCAGGAAAAAACGCAAAGTCATCGAGACGGTGTTTTCGATTCTCGTAGACCAATACCGGATCACCGACATTCGAGCGA
ATTCCATGGCCGGGTTTGAAGTGGCACTCGATGGCATCTTGTTGGCTTATTCCTTGGTCACACTAGGGCTGGTTGAGCGCTGACACTCAACTAGCACCAC
GGGT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
879 bp | 292 aa | 105 | 983 | + | No |
Chemistry : DDE
ORF sequence :
MQEHFHFTTDPAKLQKQYAAIFCFVSAQLSLIQMYLHRRNRHLVKQEDEVVMAVHLLGKLLGFSSERAWHRFVTGNLFTNGSFLERSRYNRRCRALGFAI
KWIRHELAKRGQHHAYAVVDSLPLPLCHPARMQRVKRFRGIADMGYCASKKQWYYGFKLHLQVTNQGLAMGYVVTEASCHDVKAAETVMTQIPHPYNFGD
KGYISHALREKLYKEHQAAFWTPSRHNQKHGPSKAWEEWIRKKRKVIETVFSILVDQYRITDIRANSMAGFEVALDGILLAYSLVTLGLVER
KWIRHELAKRGQHHAYAVVDSLPLPLCHPARMQRVKRFRGIADMGYCASKKQWYYGFKLHLQVTNQGLAMGYVVTEASCHDVKAAETVMTQIPHPYNFGD
KGYISHALREKLYKEHQAAFWTPSRHNQKHGPSKAWEEWIRKKRKVIETVFSILVDQYRITDIRANSMAGFEVALDGILLAYSLVTLGLVER
Blast result :
Comments
ISGsp1 is 88% aa similar to ISBs1.
References
1]Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Larimer,F., Land,M.L., Hauser,L., Mead,D. and Richardson,P. (2008) Direct Submission GenBank.