ISGsp1

  • Family IS982
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ABLJ01000003 ND Geobacillus sp.
Geobacillus sp. WCH70
DNA section
IS Length : 1004 bp

Ends


IR Length : 14

IRL : ACCCGTGGTGCTAGATAAACTTGATCAAGCATAAAAATAGCCCTTGCTGG
IRR : ACCCGTGGTGCTAGTTGAGTGTCAGCGCTCAACCAGCCCTAGTGTGACCA

Insertion site


Left flankDirect repeatRight flankDR Length
AAGTCTAAATGATAAAATAATAATGAAAT9

DNA sequence

ACCCGTGGTGCTAGATAAACTTGATCAAGCATAAAAATAGCCCTTGCTGGCGGATCTCCAGTAGAATGAAAGTGTCACCCAACATTCGAAAGGAGAGATC
CCCCATGCAAGAGCACTTTCATTTTACTACAGATCCAGCCAAACTTCAAAAACAATATGCCGCTATTTTCTGTTTTGTTTCTGCCCAACTGTCGTTGATT
CAAATGTATCTTCATCGCCGCAACCGTCACTTGGTCAAGCAAGAAGACGAAGTGGTCATGGCGGTTCACCTTTTGGGGAAGCTGCTGGGCTTTTCTTCCG
AACGAGCCTGGCATCGTTTTGTCACGGGAAATTTGTTCACAAACGGCTCGTTTCTTGAACGCTCCCGATACAACCGCCGCTGCCGGGCGCTTGGTTTCGC
CATCAAATGGATCCGTCATGAGCTGGCGAAACGTGGCCAACACCATGCTTATGCGGTCGTCGACAGCTTGCCTCTTCCGTTGTGCCATCCCGCAAGAATG
CAGCGCGTCAAGCGGTTTCGAGGGATCGCGGATATGGGGTATTGTGCTTCCAAAAAGCAATGGTACTACGGTTTCAAGCTGCATCTTCAAGTGACCAATC
AAGGGCTGGCCATGGGCTATGTCGTGACGGAAGCGTCCTGCCACGACGTCAAAGCCGCTGAAACGGTGATGACTCAAATCCCTCATCCCTACAACTTTGG
GGACAAAGGGTACATCAGCCACGCTCTTCGAGAAAAGCTGTACAAAGAACACCAAGCCGCGTTCTGGACACCGTCTCGACACAATCAAAAGCACGGCCCA
TCCAAGGCATGGGAAGAATGGATCAGGAAAAAACGCAAAGTCATCGAGACGGTGTTTTCGATTCTCGTAGACCAATACCGGATCACCGACATTCGAGCGA
ATTCCATGGCCGGGTTTGAAGTGGCACTCGATGGCATCTTGTTGGCTTATTCCTTGGTCACACTAGGGCTGGTTGAGCGCTGACACTCAACTAGCACCAC
GGGT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
879 bp292 aa105983+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MQEHFHFTTDPAKLQKQYAAIFCFVSAQLSLIQMYLHRRNRHLVKQEDEVVMAVHLLGKLLGFSSERAWHRFVTGNLFTNGSFLERSRYNRRCRALGFAI
KWIRHELAKRGQHHAYAVVDSLPLPLCHPARMQRVKRFRGIADMGYCASKKQWYYGFKLHLQVTNQGLAMGYVVTEASCHDVKAAETVMTQIPHPYNFGD
KGYISHALREKLYKEHQAAFWTPSRHNQKHGPSKAWEEWIRKKRKVIETVFSILVDQYRITDIRANSMAGFEVALDGILLAYSLVTLGLVER

 

Blast result :
Comments
ISGsp1 is 88% aa similar to ISBs1.
References
1]Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Larimer,F., Land,M.L., Hauser,L., Mead,D. and Richardson,P. (2008) Direct Submission GenBank.