ISWen3

  • Family IS66
  • Group ISBst12
MGE type ISRelated element(s) :
Isoform Synonym(s) ISWpi5
Accession numberTranspositionOriginHost
NZ_AAGB00000000 ND Wolbachia endosymbiont
Wolbachia endosymbiont of Drosophila ananassae
Wolbachia sp. wRi
DNA section
IS Length : 1482 bp

Ends


IR Length : 18/20

IRL : GTATCCGTTCAGCGGAGTGGCAGAATAAGGTAGACAAGGTGATCTAAAAA
IRR : GTATCCGTTCAGGAGAGTGGTTTAAGAAACAATAGATAGGAGATTTTGGA

Insertion site


Left flankDirect repeatRight flankDR Length
CAAGAAAGTTAAAATATAAGTATACCTA8
AGTGGGATTGAAATAATTTTCTATAAAT8
TATTTTAAAATCCTGAACGTTTTGTAAG8
AGCGGTTACAAATAATTTACCATTTCTT8
CGAAAAAAAAGGCAAAAGAAGCCTCGTG8
CAAGAAAGTTAAAATATAAGTATACCTA8
AATAAAAATTAAAGAAGGAGAGTTGGTT8
AATTTACCTTCAAAAATGAATGTTTGTA8
ATGAAAATGAGATTAAATACATTTTTAA8
TTTTCCATTTGGTAAATTTCTTAATGTT8
AGTGAGGTTAGATGCAGTAATGTTGATG8
CTACTCATATGGTTTGAGCCCACCAGAG8
TAAAGATGCTTTTTATTCAAATTTTAAA8
CAGATGATAAGTACATTTAGCCTATTTA8
AGTGGGATTGAAATAATTTTCTATAAAT8
TTCTTTTATAACATATTTTTAACTTACA8
TAAAGATGCTTTTTATTCAAATTTTAAA8
TACTAATTTAATAAAAAGTAACGTTCTT8
GAATATAGCTGAAATTTTAGGTCTACTG8
CAAAAAGAAAAAATATTCTATTCATCCC8
TATTTTAAAATCCTGAACGTTTTGTAAG8
AAGAAATGGTAAATTATTTGTAACCGCT8
TACTTATACTTCTTAAGCCGTTTTGCTA8
CAGTCAGAAAGCAGTTAGAATAGGCTCT8
AAAAAGCTGTCATATTTTAC0
TGACATATCTAAATTATTTG0
CTCCTTCGATAAATTATTTG0
TCGCAAAAACAAAAATTGAA0
AAAATATTCAAAATTATTTG0
TACATTTTTACATATTTTAC0

DNA sequence

GTATCCGTTCAGCGGAGTGGCAGAATAAGGTAGACAAGGTGATCTAAAAAGATAATCATAGAGCAAAAGTGAAATAATATGGTAAACCTTTTAGAACTTT
GCAAAAATTTACAGCAAAAAATAGAAAGGTTAGAAGCAAAAATAGAAAGATTGGAAAAAGAGAATGAAAGTTTAAAAGCAGAAAATAAGGCTTTAAAGAT
AGAAAATGCTGAGTTAAGAGAAAGACTCGGTTTAAGCTCAAAAAATTCATCAATACCAAGTTCCAAAGAGTTGTATAAAATAAAAAAGAATAAGCCGAAA
AGCGAAAGGAATATTGGCGGTCAGGTTGGTCATAAAGGAAGTTTTCGCGCCAACATGGATGCAGATAAAGTAGTAAAGATAGAGTTGCCTAATACTTGCG
AATGCGGAGGAGAAATTGCAATATGTGAAAAACCATATATTCATCAGAAAGTTGATCTTCCAGAAATCAAGCCTTATGTAGTGGAATATCAGTTAGAACA
TGGCCGTTGTCGGAGATGCGGAAAGAGAAGAAGTAGCAAGTTACCGGAAGGTGTTACGCCAGATACATTTGGTCCAAGGGTTAAGTCAATAATTGCAGCG
TTCAGCGGATTCTACAAAAATTCAAAACGCGAAATAGCGAGTGTCGTAAATGATATCTTCAATTTGAACATAAGCGTCGGTAGCATATCAAATAGTGAAC
ATAGAGTTGCTTCAAAATGCAAAAAAATGTATGAGCAGATCGAACAAGAGATAAGTAGGAGTAAAGTTCTACATATTGATGAAACGAGCCATTATAACAA
AGGTAAACTCGCTTGGTGTTGGATGTTTGCAAGCAATACGGCAAGTTTTGTAAAATTTACAGAGTCAAGAGGAATGAAAGTTTTACAAAATAGTAAATTC
TGCAATCGCAATAGCTTGGTAATAACTGACAGGTATGCAGCATACAATTATTTTGCCGATAAAAACAGGCAAATCTGTTGGGCACATTTATCAAGAGATT
TTGAAAGATTAGCACATAGTTGGAATATTGAAGTTAAAGTTCTGGGTTGTTACTTGAGAAACGTGGCCACTGAATTATTTGCACTAAAAAAAGCTTTACT
AAAAAGTGAGATAGATGTTTTGAGGTTTGTCAGACGTGCCAGAAAATTAAGAAAACGTACAAAGTATTACTTGAAGGAGATATCTCGTTTACCTGAAGCA
ATTGGAGCCTCTCGAGTTGCAAAAAATGTTCTGAGATCTGAAAGAATGATGTGGAAATTTTTAGATGACCCAGAAAATATTCCGCTGACAAATAACCACG
CTGAACGGCAAATTCGGCATTATGTCGTTTATCGCAAAAACTCATATTTTACACAATCAAAGCGGGGAAATACATTCCTTGAGCGGATAATTTCATTATA
CTTAACTTGGAAACAAAGGGGTCTCAATCCTTTCCAAAATCTCCTATCTATTGTTTCTTAAACCACTCTCCTGAACGGATAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1393 bp460 aa691461+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

VVNLLELCKNLQQKIERLEAKIERLEKENESLKAENKALKIENAELRERLGLSSKNSSIPSSKELYKIKKNKPKSERNIGGQVGHKGSFRANMDADKVVK
IELPNTCECGGEIAICEKPYIHQKVDLPEIKPYVVEYQLEHGRCRRCGKRRSSKLPEGVTPDTFGPRVKSIIAAFSGFYKNSKREIASVVNDIFNLNISV
GSISNSEHRVASKCKKMYEQIEQEISRSKVLHIDETSHYNKGKLAWCWMFASNTASFVKFTESRGMKVLQNSKFCNRNSLVITDRYAAYNYFADKNRQIC
WAHLSRDFERLAHSWNIEVKVLGCYLRNVATELFALKKALLKSEIDVLRFVRRARKLRKRTKYYLKEISRLPEAIGASRVAKNVLRSERMMWKFLDDPEN
IPLTNNHAERQIRHYVVYRKNSYFTQSKRGNTFLERIISLYLTWKQRGLNPFQNLLSIVS

 

Blast result :
Comments
Additional accession number: NC_012416.
ISWen3 is 51% aa similar to ISStau2.
References
1] ISfinder annotation (2008).
2] Salzberg,S.L., Dunning Hotopp,J., Delcher,A.L., Pop,M., Eisen,M.B. and Nelson,W.C. (2005) Direct Submission GenBank.