ISDds6

  • Family IS701
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Deinococcus deserti
Deinococcus deserti VCD115 Plasmid III
DNA section
IS Length : 2207 bp

Ends


IR Length : 12

IRL : CTTGGAATGCGTGTAGGCGCTGGTTTCCCAGGTGGAAGATGCTGGAGACA
IRR : CTTGGAATGCGTACGCTAAGCAGGTGGGCCAAGAGGAACTGTTTAAAAGA

Insertion site


Left flankDirect repeatRight flankDR Length
AACACGACTTTGTCACTCCTCGGCACGCACACAGG0

DNA sequence

CTTGGAATGCGTGTAGGCGCTGGTTTCCCAGGTGGAAGATGCTGGAGACATGACGGTCCCACACAACTGGCAGCGTGCCTTCCGAGGCTTTCTCTCCCCC
TACCTGGAGACCCTGGACAATGCCAAACAGCGGGTATGCCTGCCCCGCTATGTTCGCGGACTGCTGGCCCCTCTGGAGCGCAAGAGCACTCAACCAATCG
CTGAACATGTCGGCATGCCGTACCAGCGTCTGCACCACTTCGTGAACGTCAGCCATTGGGACGCAGAGCAGATCGAGATCCGACTGAAACGGCAGGCTCA
ACGACTTTGTGGGGGTAAAAATGCCGTGTTGATCATTGACGACACGGCATTGCCCAAAAGCGGAGACGCAAGCGTAGGGGTTGCATACCAGTACTGCGGA
GCGTTGGGCAAGATCGCCAACTGCCAATCGCTGGTTACCCTCACCCTGTCGGATGGCTCCCTGTTCGCCCCTTTGAGTATGCGGCTCTTCCTGCCCGGGT
CGTGGGCAGGGAATCCGGAACGATGTCAGGGTGCTGGCGTACCAGTGGTACGCCAGCACTACAGATCCAAGGGTGAAATTGCCATGGAAGAGCTCGACCG
GGCGCTGGACGCCGGTGTGACGTTTCGGGTAGTCCTGGCCGATGCGGGCTATGGCATCAACAAGGACTTCCGGCAAGCGCTGTCCCAGCGTGGCTTGACT
TGGGCGGTGGGCATTGTGGGGATCCAGAAGGTCTTCAGCTTGGACGTGACGCTGCGCGATCCGCCACAGAAGACTGGAGGACGGCCCGGGAAACACCCGA
TCCCAAGCGAAATCGCACGTCCTGTCAAGGACGTGCTCCATGAGATTCCTCCGTACCGCTGGCATACGGTCAAAGGAGCGAAGAGTTCCCGCTGGCTGGT
GGTCCGTGGCCGGATTGCCGATGGCCTTCCGAACAAGCGGGGGTTGCATCTTCCAGGCGAAGCAGTCTGGGTGGTGGGAGAGAAACGGCGGGGAGGTGAG
ATCAAGTACTACGTGACCAATCACGCACCATCTACATCCATGGCTCAGGTGGTTCGCGACATCAAAGCCAGGTGGGCCTGCGAGGTTCTGCACCTGCAAA
GCAAGGAAGAACTCGGCCTGGACCACTTCGAGGGTCGGTCACTCCTAGGCCTTGAACACCACATCGTGCTGGTACTGCTGACCATGATGTTTTTGCAGAC
CCTTCGACAGCAACAATGTTCTGTTGCTGCCGAGATTCCAACCCTACCGGAACTCAGACGTACCACCAGCCGGGCGTTGGAACAAATTTGGTTTGGGCGA
TGTCCGCATTGCGGTGAGGTGGTTCAGGTGGGATCGACACCACTTCCGGGACTGAAGGTGAGGATTTCGAACCCGTATCGAAGGAAAAAGACCCTGTCGC
TTTCTGATAACTTCAACACACCTTGATGATTAATAACTACCTGACTACGGACAGCGATGCCGGAATAATTCAATCGGACTTCAAGCTCGTCTGCAATCTC
TTGATGCTGCTCAAGAGCAGTTTCCGTCGAGGATGATAAGTACCCGACAAGTTCCACATGCGGACCAACCTCATCGTATGAGATGACAATTGCCTGGTGC
TCGCCCACGATGCAGCCCATGCAGGCTTCTATCAAGTTGAGGAGCACATGAACTGGAATGGAATCCAAGGGAACTTTCATATGAGTGCTCCTATTTCACT
TGATTCTTTGTCTATTGAAGTTAGGACTATGTTATTTCTATTTTTGATCCTCCACAGTGGGGAGCCACTCGTCTTGAACCCAAGCAATGAAGCTAGGCCA
GCGGTAGGTGTCAAATGAGCCGTCATCGTGCACCCACCGCACCACCGCATACTCTGGTCCAGCAGAGCGCGTGTCGAAGCAGAAGGCGTCTCCATCCTGA
CTCGTCTCAAATGGCACAAGAAATTGAGGAAGGCCAATAGCCCGGAGATCACGCGTCTGGTCGAGCAGTCGTCCGCCAGTCAACTCGTGATGAATTACCA
ACGGCCAGTAGGCACCAGCCAGAACATCGGAGAGAGTCAGTAAATAGGCGCGGTACGACGGTGGAAGACGAGTCTCCAACAGAACCTCTAGCGCATCAAT
TTCCCGATCATCCGGCAGTTTGGGAATCAATGGGGCTGGCACGCCTCCCGCTCTGAGTCTTTTAAACAGTTCCTCTTGGCCCACCTGCTTAGCGTACGCA
TTCCAAG
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1377 bp458 aa501426+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTVPHNWQRAFRGFLSPYLETLDNAKQRVCLPRYVRGLLAPLERKSTQPIAEHVGMPYQRLHHFVNVSHWDAEQIEIRLKRQAQRLCGGKNAVLIIDDTA
LPKSGDASVGVAYQYCGALGKIANCQSLVTLTLSDGSLFAPLSMRLFLPGSWAGNPERCQGAGVPVVRQHYRSKGEIAMEELDRALDAGVTFRVVLADAG
YGINKDFRQALSQRGLTWAVGIVGIQKVFSLDVTLRDPPQKTGGRPGKHPIPSEIARPVKDVLHEIPPYRWHTVKGAKSSRWLVVRGRIADGLPNKRGLH
LPGEAVWVVGEKRRGGEIKYYVTNHAPSTSMAQVVRDIKARWACEVLHLQSKEELGLDHFEGRSLLGLEHHIVLVLLTMMFLQTLRQQQCSVAAEIPTLP
ELRRTTSRALEQIWFGRCPHCGEVVQVGSTPLPGLKVRISNPYRRKKTLSLSDNFNTP

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
397 bp148 aa17382134-No
ORF function : Passenger Gene
Annotation : Description :

ORF sequence :

VGQEELFKRLRAGGVPAPLIPKLPDDREIDALEVLLETRLPPSYRAYLLTLSDVLAGAYWPLVIHHELTGGRLLDQTRDLRAIGLPQFLVPFETSQDGDA
FCFDTRSAGPEYAVVRWVHDDGSFDTYRWPSFIAWVQDEWLPTVEDQK

 

Blast result :
Comments
ISDds6 is 62% aa similar to ISBj6. The second ORF is a passenger gene.
References
1] Siguier, P. (2008) ISfinder annotation.