ISDds6
- Family IS701
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Deinococcus deserti | Deinococcus deserti VCD115 Plasmid III |
DNA section
IS Length : 2207 bp
Ends
IR Length : 12
IRL : CTTGGAATGCGTGTAGGCGCTGGTTTCCCAGGTGGAAGATGCTGGAGACA
IRR : CTTGGAATGCGTACGCTAAGCAGGTGGGCCAAGAGGAACTGTTTAAAAGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AACACGACTTTGTCACT | CCTCGGCACGCACACAGG | 0 |
DNA sequence
CTTGGAATGCGTGTAGGCGCTGGTTTCCCAGGTGGAAGATGCTGGAGACATGACGGTCCCACACAACTGGCAGCGTGCCTTCCGAGGCTTTCTCTCCCCC
TACCTGGAGACCCTGGACAATGCCAAACAGCGGGTATGCCTGCCCCGCTATGTTCGCGGACTGCTGGCCCCTCTGGAGCGCAAGAGCACTCAACCAATCG
CTGAACATGTCGGCATGCCGTACCAGCGTCTGCACCACTTCGTGAACGTCAGCCATTGGGACGCAGAGCAGATCGAGATCCGACTGAAACGGCAGGCTCA
ACGACTTTGTGGGGGTAAAAATGCCGTGTTGATCATTGACGACACGGCATTGCCCAAAAGCGGAGACGCAAGCGTAGGGGTTGCATACCAGTACTGCGGA
GCGTTGGGCAAGATCGCCAACTGCCAATCGCTGGTTACCCTCACCCTGTCGGATGGCTCCCTGTTCGCCCCTTTGAGTATGCGGCTCTTCCTGCCCGGGT
CGTGGGCAGGGAATCCGGAACGATGTCAGGGTGCTGGCGTACCAGTGGTACGCCAGCACTACAGATCCAAGGGTGAAATTGCCATGGAAGAGCTCGACCG
GGCGCTGGACGCCGGTGTGACGTTTCGGGTAGTCCTGGCCGATGCGGGCTATGGCATCAACAAGGACTTCCGGCAAGCGCTGTCCCAGCGTGGCTTGACT
TGGGCGGTGGGCATTGTGGGGATCCAGAAGGTCTTCAGCTTGGACGTGACGCTGCGCGATCCGCCACAGAAGACTGGAGGACGGCCCGGGAAACACCCGA
TCCCAAGCGAAATCGCACGTCCTGTCAAGGACGTGCTCCATGAGATTCCTCCGTACCGCTGGCATACGGTCAAAGGAGCGAAGAGTTCCCGCTGGCTGGT
GGTCCGTGGCCGGATTGCCGATGGCCTTCCGAACAAGCGGGGGTTGCATCTTCCAGGCGAAGCAGTCTGGGTGGTGGGAGAGAAACGGCGGGGAGGTGAG
ATCAAGTACTACGTGACCAATCACGCACCATCTACATCCATGGCTCAGGTGGTTCGCGACATCAAAGCCAGGTGGGCCTGCGAGGTTCTGCACCTGCAAA
GCAAGGAAGAACTCGGCCTGGACCACTTCGAGGGTCGGTCACTCCTAGGCCTTGAACACCACATCGTGCTGGTACTGCTGACCATGATGTTTTTGCAGAC
CCTTCGACAGCAACAATGTTCTGTTGCTGCCGAGATTCCAACCCTACCGGAACTCAGACGTACCACCAGCCGGGCGTTGGAACAAATTTGGTTTGGGCGA
TGTCCGCATTGCGGTGAGGTGGTTCAGGTGGGATCGACACCACTTCCGGGACTGAAGGTGAGGATTTCGAACCCGTATCGAAGGAAAAAGACCCTGTCGC
TTTCTGATAACTTCAACACACCTTGATGATTAATAACTACCTGACTACGGACAGCGATGCCGGAATAATTCAATCGGACTTCAAGCTCGTCTGCAATCTC
TTGATGCTGCTCAAGAGCAGTTTCCGTCGAGGATGATAAGTACCCGACAAGTTCCACATGCGGACCAACCTCATCGTATGAGATGACAATTGCCTGGTGC
TCGCCCACGATGCAGCCCATGCAGGCTTCTATCAAGTTGAGGAGCACATGAACTGGAATGGAATCCAAGGGAACTTTCATATGAGTGCTCCTATTTCACT
TGATTCTTTGTCTATTGAAGTTAGGACTATGTTATTTCTATTTTTGATCCTCCACAGTGGGGAGCCACTCGTCTTGAACCCAAGCAATGAAGCTAGGCCA
GCGGTAGGTGTCAAATGAGCCGTCATCGTGCACCCACCGCACCACCGCATACTCTGGTCCAGCAGAGCGCGTGTCGAAGCAGAAGGCGTCTCCATCCTGA
CTCGTCTCAAATGGCACAAGAAATTGAGGAAGGCCAATAGCCCGGAGATCACGCGTCTGGTCGAGCAGTCGTCCGCCAGTCAACTCGTGATGAATTACCA
ACGGCCAGTAGGCACCAGCCAGAACATCGGAGAGAGTCAGTAAATAGGCGCGGTACGACGGTGGAAGACGAGTCTCCAACAGAACCTCTAGCGCATCAAT
TTCCCGATCATCCGGCAGTTTGGGAATCAATGGGGCTGGCACGCCTCCCGCTCTGAGTCTTTTAAACAGTTCCTCTTGGCCCACCTGCTTAGCGTACGCA
TTCCAAG
TACCTGGAGACCCTGGACAATGCCAAACAGCGGGTATGCCTGCCCCGCTATGTTCGCGGACTGCTGGCCCCTCTGGAGCGCAAGAGCACTCAACCAATCG
CTGAACATGTCGGCATGCCGTACCAGCGTCTGCACCACTTCGTGAACGTCAGCCATTGGGACGCAGAGCAGATCGAGATCCGACTGAAACGGCAGGCTCA
ACGACTTTGTGGGGGTAAAAATGCCGTGTTGATCATTGACGACACGGCATTGCCCAAAAGCGGAGACGCAAGCGTAGGGGTTGCATACCAGTACTGCGGA
GCGTTGGGCAAGATCGCCAACTGCCAATCGCTGGTTACCCTCACCCTGTCGGATGGCTCCCTGTTCGCCCCTTTGAGTATGCGGCTCTTCCTGCCCGGGT
CGTGGGCAGGGAATCCGGAACGATGTCAGGGTGCTGGCGTACCAGTGGTACGCCAGCACTACAGATCCAAGGGTGAAATTGCCATGGAAGAGCTCGACCG
GGCGCTGGACGCCGGTGTGACGTTTCGGGTAGTCCTGGCCGATGCGGGCTATGGCATCAACAAGGACTTCCGGCAAGCGCTGTCCCAGCGTGGCTTGACT
TGGGCGGTGGGCATTGTGGGGATCCAGAAGGTCTTCAGCTTGGACGTGACGCTGCGCGATCCGCCACAGAAGACTGGAGGACGGCCCGGGAAACACCCGA
TCCCAAGCGAAATCGCACGTCCTGTCAAGGACGTGCTCCATGAGATTCCTCCGTACCGCTGGCATACGGTCAAAGGAGCGAAGAGTTCCCGCTGGCTGGT
GGTCCGTGGCCGGATTGCCGATGGCCTTCCGAACAAGCGGGGGTTGCATCTTCCAGGCGAAGCAGTCTGGGTGGTGGGAGAGAAACGGCGGGGAGGTGAG
ATCAAGTACTACGTGACCAATCACGCACCATCTACATCCATGGCTCAGGTGGTTCGCGACATCAAAGCCAGGTGGGCCTGCGAGGTTCTGCACCTGCAAA
GCAAGGAAGAACTCGGCCTGGACCACTTCGAGGGTCGGTCACTCCTAGGCCTTGAACACCACATCGTGCTGGTACTGCTGACCATGATGTTTTTGCAGAC
CCTTCGACAGCAACAATGTTCTGTTGCTGCCGAGATTCCAACCCTACCGGAACTCAGACGTACCACCAGCCGGGCGTTGGAACAAATTTGGTTTGGGCGA
TGTCCGCATTGCGGTGAGGTGGTTCAGGTGGGATCGACACCACTTCCGGGACTGAAGGTGAGGATTTCGAACCCGTATCGAAGGAAAAAGACCCTGTCGC
TTTCTGATAACTTCAACACACCTTGATGATTAATAACTACCTGACTACGGACAGCGATGCCGGAATAATTCAATCGGACTTCAAGCTCGTCTGCAATCTC
TTGATGCTGCTCAAGAGCAGTTTCCGTCGAGGATGATAAGTACCCGACAAGTTCCACATGCGGACCAACCTCATCGTATGAGATGACAATTGCCTGGTGC
TCGCCCACGATGCAGCCCATGCAGGCTTCTATCAAGTTGAGGAGCACATGAACTGGAATGGAATCCAAGGGAACTTTCATATGAGTGCTCCTATTTCACT
TGATTCTTTGTCTATTGAAGTTAGGACTATGTTATTTCTATTTTTGATCCTCCACAGTGGGGAGCCACTCGTCTTGAACCCAAGCAATGAAGCTAGGCCA
GCGGTAGGTGTCAAATGAGCCGTCATCGTGCACCCACCGCACCACCGCATACTCTGGTCCAGCAGAGCGCGTGTCGAAGCAGAAGGCGTCTCCATCCTGA
CTCGTCTCAAATGGCACAAGAAATTGAGGAAGGCCAATAGCCCGGAGATCACGCGTCTGGTCGAGCAGTCGTCCGCCAGTCAACTCGTGATGAATTACCA
ACGGCCAGTAGGCACCAGCCAGAACATCGGAGAGAGTCAGTAAATAGGCGCGGTACGACGGTGGAAGACGAGTCTCCAACAGAACCTCTAGCGCATCAAT
TTCCCGATCATCCGGCAGTTTGGGAATCAATGGGGCTGGCACGCCTCCCGCTCTGAGTCTTTTAAACAGTTCCTCTTGGCCCACCTGCTTAGCGTACGCA
TTCCAAG
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1377 bp | 458 aa | 50 | 1426 | + | No |
Chemistry : DDE
ORF sequence :
MTVPHNWQRAFRGFLSPYLETLDNAKQRVCLPRYVRGLLAPLERKSTQPIAEHVGMPYQRLHHFVNVSHWDAEQIEIRLKRQAQRLCGGKNAVLIIDDTA
LPKSGDASVGVAYQYCGALGKIANCQSLVTLTLSDGSLFAPLSMRLFLPGSWAGNPERCQGAGVPVVRQHYRSKGEIAMEELDRALDAGVTFRVVLADAG
YGINKDFRQALSQRGLTWAVGIVGIQKVFSLDVTLRDPPQKTGGRPGKHPIPSEIARPVKDVLHEIPPYRWHTVKGAKSSRWLVVRGRIADGLPNKRGLH
LPGEAVWVVGEKRRGGEIKYYVTNHAPSTSMAQVVRDIKARWACEVLHLQSKEELGLDHFEGRSLLGLEHHIVLVLLTMMFLQTLRQQQCSVAAEIPTLP
ELRRTTSRALEQIWFGRCPHCGEVVQVGSTPLPGLKVRISNPYRRKKTLSLSDNFNTP
LPKSGDASVGVAYQYCGALGKIANCQSLVTLTLSDGSLFAPLSMRLFLPGSWAGNPERCQGAGVPVVRQHYRSKGEIAMEELDRALDAGVTFRVVLADAG
YGINKDFRQALSQRGLTWAVGIVGIQKVFSLDVTLRDPPQKTGGRPGKHPIPSEIARPVKDVLHEIPPYRWHTVKGAKSSRWLVVRGRIADGLPNKRGLH
LPGEAVWVVGEKRRGGEIKYYVTNHAPSTSMAQVVRDIKARWACEVLHLQSKEELGLDHFEGRSLLGLEHHIVLVLLTMMFLQTLRQQQCSVAAEIPTLP
ELRRTTSRALEQIWFGRCPHCGEVVQVGSTPLPGLKVRISNPYRRKKTLSLSDNFNTP
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
397 bp | 148 aa | 1738 | 2134 | - | No |
Annotation : Description :
ORF sequence :
VGQEELFKRLRAGGVPAPLIPKLPDDREIDALEVLLETRLPPSYRAYLLTLSDVLAGAYWPLVIHHELTGGRLLDQTRDLRAIGLPQFLVPFETSQDGDA
FCFDTRSAGPEYAVVRWVHDDGSFDTYRWPSFIAWVQDEWLPTVEDQK
FCFDTRSAGPEYAVVRWVHDDGSFDTYRWPSFIAWVQDEWLPTVEDQK
Blast result :
Comments
ISDds6 is 62% aa similar to ISBj6. The second ORF is a passenger gene.
References
1] Siguier, P. (2008) ISfinder annotation.