ISDds7

  • Family IS4
  • Group IS10
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Deinococcus deserti
Deinococcus deserti VCD115
DNA section
IS Length : 1123 bp

Ends


IR Length : 15/17

IRL : CTACTCCTCAAAACTCGTAGGGTGAAGGGAAAGTCGGCTCCTGTACGGTG
IRR : CTACCCCTCAAAACGCGGCATAAGGTCCGCCAAAGTCTGCCAGGACGACG

Insertion site


Left flankDirect repeatRight flankDR Length
CTGGTGCTTTCAGTCTGATTAGGCTTTCAGTACCAA0
CAAGGAACACGGACCTCATCAGGCTCTATCGTCATC0

DNA sequence

CTACTCCTCAAAACTCGTAGGGTGAAGGGAAAGTCGGCTCCTGTACGGTGTTTCTGCGATGAAATCACCCAAGAGCCGACAGCCACACGATAGCTTGCAG
ACCGCGCTGCGATCTGCCTTTCCCATCGACACCCGACGCTTGACGGTCCTGGCTGCACTGATCCTGGCCATGATCCAGGCACGGACCGTGGTGCTGTACA
CCCTCAAGAATCATGTCGTCCTGAAAGGAAGCCTGGAGACACGGTACCAACGCCTGTTGCGCTTCGTGCAGTTTCCGCTACCCGAGGAATTGTTTGCCCG
ATTCTCGCTGAGCTTTCTGCCAGGTAAAGAGTTGGATCTGATCCTGGACCGGACTAACTGGAAGCTTGGTCAGCAGGACGTCAACATCCTGCTGCTCTCG
GCAGTATGGAGCAGCTGTAGTTTCCCCTTGATGTGGACCGTGCTTCCCCACAGGGGCGCCAGTGATCAACAGGACCGGGAAGCGCTCGTGGAGCGCTTCG
TGACGGCCTGTCCCCACCGAAAGATCCGGAGCTTGCTGGCTGACCGTGAATTCATCGGTCAGCACTGGTTCGCGTTCCTCGATCAGCAGGGGATCGCTCC
GTGTATTCGCCTGCCCGCTCGCACCACCATCGGTGGCGCACGGTTCCCGGTCTGGGCCGCGTTTAAGAAATTGCACCCGGGTGAAGTGCGCATCTGCCAC
CGTCCAGTGACGATCTACGGGGCCACCCTCCGGGTAGCCGCGACCAAAAATCAGGCACGCGAACCGCTCTACCTGGCCTACCGGGGGCACGCCCGCAGCA
ACCTTCGGCGATACACTCAGCGCTGGCAGACGGAAAATCTGCATGCGGCGCTGAAAACCAGGGGGTTTAACCTGGAGGACACGGGCCTGACTCGGGCCGA
ACGCGTCTCCACACTCCTGGCGGTCGTTTCCATAGCGTTTATCTGAGCATGTGTTACCGGGGAACTCCAGGAGGTCAGGCAGGGGGTGCAGCTGAAAAAA
CACGGACACCGTACGGTGTCCGTGTTCCGAAAGGGACTCGATCATCTTCAGGATCTGTTGCTTCATCCGTCGCCGTCGTCCTGGCAGACTTTGGCGGACC
TTATGCCGCGTTTTGAGGGGTAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1065 bp354 aa591123+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKSPKSRQPHDSLQTALRSAFPIDTRRLTVLAALILAMIQARTVVLYTLKNHVVLKGSLETRYQRLLRFVQFPLPEELFARFSLSFLPGKELDLILDRTN
WKLGQQDVNILLLSAVWSSCSFPLMWTVLPHRGASDQQDREALVERFVTACPHRKIRSLLADREFIGQHWFAFLDQQGIAPCIRLPARTTIGGARFPVWA
AFKKLHPGEVRICHRPVTIYGATLRVAATKNQAREPLYLAYRGHARSNLRRYTQRWQTENLHAALKTRGFNLEDTGLTRAERVSTLLAVVSIAFI*ACVT
GELQEVRQGVQLKKHGHRTVSVFRKGLDHLQDLLLHPSPSSWQTLADLMPRFEG

 

Blast result :
Comments
ISDds7 is 68% aa similar to ISDge9. There is an in frame STOP codon TGA instead of a tryptophan (W, codon TGG).
References
1] Siguier, P. (2008) ISfinder annotation.