ISDds7
- Family IS4
- Group IS10
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Deinococcus deserti | Deinococcus deserti VCD115 |
DNA section
IS Length : 1123 bp
Ends
IR Length : 15/17
IRL : CTACTCCTCAAAACTCGTAGGGTGAAGGGAAAGTCGGCTCCTGTACGGTG
IRR : CTACCCCTCAAAACGCGGCATAAGGTCCGCCAAAGTCTGCCAGGACGACG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTGGTGCTTTCAGTCTGA | TTAGGCTTTCAGTACCAA | 0 | |
CAAGGAACACGGACCTCA | TCAGGCTCTATCGTCATC | 0 |
DNA sequence
CTACTCCTCAAAACTCGTAGGGTGAAGGGAAAGTCGGCTCCTGTACGGTGTTTCTGCGATGAAATCACCCAAGAGCCGACAGCCACACGATAGCTTGCAG
ACCGCGCTGCGATCTGCCTTTCCCATCGACACCCGACGCTTGACGGTCCTGGCTGCACTGATCCTGGCCATGATCCAGGCACGGACCGTGGTGCTGTACA
CCCTCAAGAATCATGTCGTCCTGAAAGGAAGCCTGGAGACACGGTACCAACGCCTGTTGCGCTTCGTGCAGTTTCCGCTACCCGAGGAATTGTTTGCCCG
ATTCTCGCTGAGCTTTCTGCCAGGTAAAGAGTTGGATCTGATCCTGGACCGGACTAACTGGAAGCTTGGTCAGCAGGACGTCAACATCCTGCTGCTCTCG
GCAGTATGGAGCAGCTGTAGTTTCCCCTTGATGTGGACCGTGCTTCCCCACAGGGGCGCCAGTGATCAACAGGACCGGGAAGCGCTCGTGGAGCGCTTCG
TGACGGCCTGTCCCCACCGAAAGATCCGGAGCTTGCTGGCTGACCGTGAATTCATCGGTCAGCACTGGTTCGCGTTCCTCGATCAGCAGGGGATCGCTCC
GTGTATTCGCCTGCCCGCTCGCACCACCATCGGTGGCGCACGGTTCCCGGTCTGGGCCGCGTTTAAGAAATTGCACCCGGGTGAAGTGCGCATCTGCCAC
CGTCCAGTGACGATCTACGGGGCCACCCTCCGGGTAGCCGCGACCAAAAATCAGGCACGCGAACCGCTCTACCTGGCCTACCGGGGGCACGCCCGCAGCA
ACCTTCGGCGATACACTCAGCGCTGGCAGACGGAAAATCTGCATGCGGCGCTGAAAACCAGGGGGTTTAACCTGGAGGACACGGGCCTGACTCGGGCCGA
ACGCGTCTCCACACTCCTGGCGGTCGTTTCCATAGCGTTTATCTGAGCATGTGTTACCGGGGAACTCCAGGAGGTCAGGCAGGGGGTGCAGCTGAAAAAA
CACGGACACCGTACGGTGTCCGTGTTCCGAAAGGGACTCGATCATCTTCAGGATCTGTTGCTTCATCCGTCGCCGTCGTCCTGGCAGACTTTGGCGGACC
TTATGCCGCGTTTTGAGGGGTAG
ACCGCGCTGCGATCTGCCTTTCCCATCGACACCCGACGCTTGACGGTCCTGGCTGCACTGATCCTGGCCATGATCCAGGCACGGACCGTGGTGCTGTACA
CCCTCAAGAATCATGTCGTCCTGAAAGGAAGCCTGGAGACACGGTACCAACGCCTGTTGCGCTTCGTGCAGTTTCCGCTACCCGAGGAATTGTTTGCCCG
ATTCTCGCTGAGCTTTCTGCCAGGTAAAGAGTTGGATCTGATCCTGGACCGGACTAACTGGAAGCTTGGTCAGCAGGACGTCAACATCCTGCTGCTCTCG
GCAGTATGGAGCAGCTGTAGTTTCCCCTTGATGTGGACCGTGCTTCCCCACAGGGGCGCCAGTGATCAACAGGACCGGGAAGCGCTCGTGGAGCGCTTCG
TGACGGCCTGTCCCCACCGAAAGATCCGGAGCTTGCTGGCTGACCGTGAATTCATCGGTCAGCACTGGTTCGCGTTCCTCGATCAGCAGGGGATCGCTCC
GTGTATTCGCCTGCCCGCTCGCACCACCATCGGTGGCGCACGGTTCCCGGTCTGGGCCGCGTTTAAGAAATTGCACCCGGGTGAAGTGCGCATCTGCCAC
CGTCCAGTGACGATCTACGGGGCCACCCTCCGGGTAGCCGCGACCAAAAATCAGGCACGCGAACCGCTCTACCTGGCCTACCGGGGGCACGCCCGCAGCA
ACCTTCGGCGATACACTCAGCGCTGGCAGACGGAAAATCTGCATGCGGCGCTGAAAACCAGGGGGTTTAACCTGGAGGACACGGGCCTGACTCGGGCCGA
ACGCGTCTCCACACTCCTGGCGGTCGTTTCCATAGCGTTTATCTGAGCATGTGTTACCGGGGAACTCCAGGAGGTCAGGCAGGGGGTGCAGCTGAAAAAA
CACGGACACCGTACGGTGTCCGTGTTCCGAAAGGGACTCGATCATCTTCAGGATCTGTTGCTTCATCCGTCGCCGTCGTCCTGGCAGACTTTGGCGGACC
TTATGCCGCGTTTTGAGGGGTAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1065 bp | 354 aa | 59 | 1123 | + | No |
Chemistry : DDE
ORF sequence :
MKSPKSRQPHDSLQTALRSAFPIDTRRLTVLAALILAMIQARTVVLYTLKNHVVLKGSLETRYQRLLRFVQFPLPEELFARFSLSFLPGKELDLILDRTN
WKLGQQDVNILLLSAVWSSCSFPLMWTVLPHRGASDQQDREALVERFVTACPHRKIRSLLADREFIGQHWFAFLDQQGIAPCIRLPARTTIGGARFPVWA
AFKKLHPGEVRICHRPVTIYGATLRVAATKNQAREPLYLAYRGHARSNLRRYTQRWQTENLHAALKTRGFNLEDTGLTRAERVSTLLAVVSIAFI*ACVT
GELQEVRQGVQLKKHGHRTVSVFRKGLDHLQDLLLHPSPSSWQTLADLMPRFEG
WKLGQQDVNILLLSAVWSSCSFPLMWTVLPHRGASDQQDREALVERFVTACPHRKIRSLLADREFIGQHWFAFLDQQGIAPCIRLPARTTIGGARFPVWA
AFKKLHPGEVRICHRPVTIYGATLRVAATKNQAREPLYLAYRGHARSNLRRYTQRWQTENLHAALKTRGFNLEDTGLTRAERVSTLLAVVSIAFI*ACVT
GELQEVRQGVQLKKHGHRTVSVFRKGLDHLQDLLLHPSPSSWQTLADLMPRFEG
Blast result :
Comments
ISDds7 is 68% aa similar to ISDge9. There is an in frame STOP codon TGA instead of a tryptophan (W, codon TGG).
References
1] Siguier, P. (2008) ISfinder annotation.