ISDds4

  • Family IS982
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Deinococcus deserti
Deinococcus deserti VCD115 Plasmid III
DNA section
IS Length : 845 bp

Ends


IR Length : 18/23

IRL : ACCCTGTTTAGGGCCTGAATCAGCGCAGCTGCATCACCTGTAGGTCGATA
IRR : ACCCCGTTTAGGGTTGCATGAGGTTGTGGGCGAGTATCGCCAGGACGACG

Insertion site


Left flankDirect repeatRight flankDR Length
GCTCCGCGATGCGCCCTTGTATACCGCGACGGTGACCTGCT3

DNA sequence

ACCCTGTTTAGGGCCTGAATCAGCGCAGCTGCATCACCTGTAGGTCGATAAAAATGGAGTCGGTATGGCTAGATACCGACTCCACCACAGTTTAGGCCGT
CGTCGCGTTATCCGCACCCTCTGGCGTTGGGGCAGAAAGCATTTCAGCGACCAGAAGAGTTGCCGACACCAGAAGGTGACAGATGCGTTCCTCGTCGCGC
TTCTCCTGTCGCGGTATGTCTTCAAACATCCGTACCCGTCTATCTGGTGGAACATCCTGGGCGAAGATCGTCCGAACCTTCCCAGTTACACCCAGGCGTT
CACACGCGGCCAACGTCTCCTGGAGCATCTTGAGGCTCTCGTCAGTCCACCTTTGCCCTGTACAGAAGTTGTGGTGGACTCAATGCCACTGCCAGTGTGT
CGTCCGAAACGAGGGAAACGCTGCGCATTTCCTGGTGCGCGGTGGGGTTTCGGGACCCAGGGCGATTTCTTCGGCTTCAAACTCCACGCCTGGGTCTCAC
CCGCTGGCCAGGTGATGCAGTACCTCATCCGACCAGCCAACCTGCACGACACGACCGTCGCCTACGAGCTTAACCGACGCTGGGTAGACTTCGCTGGACC
CCAAATAATCGGGGATAAGGGGTACTGCGCGCTGGGGTTCATCTACCCACCCAAGAAAAACACGCGCTACGACACCGGGTGGCGGGAAAACCGCCACCCG
AGATTACGCAAACGCATCGAGACCGTGTTTTCTCAATTGGTCGAGTCTCAGATCCGCTCTGTGCAAACCAAAACCCTAACCTCATTGCGCTTCCGCGTCG
TCCTGGCGATACTCGCCCACAACCTCATGCAACCCTAAACGGGGT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
774 bp257 aa65838+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MARYRLHHSLGRRRVIRTLWRWGRKHFSDQKSCRHQKVTDAFLVALLLSRYVFKHPYPSIWWNILGEDRPNLPSYTQAFTRGQRLLEHLEALVSPPLPCT
EVVVDSMPLPVCRPKRGKRCAFPGARWGFGTQGDFFGFKLHAWVSPAGQVMQYLIRPANLHDTTVAYELNRRWVDFAGPQIIGDKGYCALGFIYPPKKNT
RYDTGWRENRHPRLRKRIETVFSQLVESQIRSVQTKTLTSLRFRVVLAILAHNLMQP

 

Blast result :
Comments
ISDds4 is 43% aa similar to IS982C.
References
1] Siguier, P. (2008) ISfinder annotation.