ISDds4
- Family IS982
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Deinococcus deserti | Deinococcus deserti VCD115 Plasmid III |
DNA section
IS Length : 845 bp
Ends
IR Length : 18/23
IRL : ACCCTGTTTAGGGCCTGAATCAGCGCAGCTGCATCACCTGTAGGTCGATA
IRR : ACCCCGTTTAGGGTTGCATGAGGTTGTGGGCGAGTATCGCCAGGACGACG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCTCCGCGATGCGCCCTT | GTA | TACCGCGACGGTGACCTGCT | 3 |
DNA sequence
ACCCTGTTTAGGGCCTGAATCAGCGCAGCTGCATCACCTGTAGGTCGATAAAAATGGAGTCGGTATGGCTAGATACCGACTCCACCACAGTTTAGGCCGT
CGTCGCGTTATCCGCACCCTCTGGCGTTGGGGCAGAAAGCATTTCAGCGACCAGAAGAGTTGCCGACACCAGAAGGTGACAGATGCGTTCCTCGTCGCGC
TTCTCCTGTCGCGGTATGTCTTCAAACATCCGTACCCGTCTATCTGGTGGAACATCCTGGGCGAAGATCGTCCGAACCTTCCCAGTTACACCCAGGCGTT
CACACGCGGCCAACGTCTCCTGGAGCATCTTGAGGCTCTCGTCAGTCCACCTTTGCCCTGTACAGAAGTTGTGGTGGACTCAATGCCACTGCCAGTGTGT
CGTCCGAAACGAGGGAAACGCTGCGCATTTCCTGGTGCGCGGTGGGGTTTCGGGACCCAGGGCGATTTCTTCGGCTTCAAACTCCACGCCTGGGTCTCAC
CCGCTGGCCAGGTGATGCAGTACCTCATCCGACCAGCCAACCTGCACGACACGACCGTCGCCTACGAGCTTAACCGACGCTGGGTAGACTTCGCTGGACC
CCAAATAATCGGGGATAAGGGGTACTGCGCGCTGGGGTTCATCTACCCACCCAAGAAAAACACGCGCTACGACACCGGGTGGCGGGAAAACCGCCACCCG
AGATTACGCAAACGCATCGAGACCGTGTTTTCTCAATTGGTCGAGTCTCAGATCCGCTCTGTGCAAACCAAAACCCTAACCTCATTGCGCTTCCGCGTCG
TCCTGGCGATACTCGCCCACAACCTCATGCAACCCTAAACGGGGT
CGTCGCGTTATCCGCACCCTCTGGCGTTGGGGCAGAAAGCATTTCAGCGACCAGAAGAGTTGCCGACACCAGAAGGTGACAGATGCGTTCCTCGTCGCGC
TTCTCCTGTCGCGGTATGTCTTCAAACATCCGTACCCGTCTATCTGGTGGAACATCCTGGGCGAAGATCGTCCGAACCTTCCCAGTTACACCCAGGCGTT
CACACGCGGCCAACGTCTCCTGGAGCATCTTGAGGCTCTCGTCAGTCCACCTTTGCCCTGTACAGAAGTTGTGGTGGACTCAATGCCACTGCCAGTGTGT
CGTCCGAAACGAGGGAAACGCTGCGCATTTCCTGGTGCGCGGTGGGGTTTCGGGACCCAGGGCGATTTCTTCGGCTTCAAACTCCACGCCTGGGTCTCAC
CCGCTGGCCAGGTGATGCAGTACCTCATCCGACCAGCCAACCTGCACGACACGACCGTCGCCTACGAGCTTAACCGACGCTGGGTAGACTTCGCTGGACC
CCAAATAATCGGGGATAAGGGGTACTGCGCGCTGGGGTTCATCTACCCACCCAAGAAAAACACGCGCTACGACACCGGGTGGCGGGAAAACCGCCACCCG
AGATTACGCAAACGCATCGAGACCGTGTTTTCTCAATTGGTCGAGTCTCAGATCCGCTCTGTGCAAACCAAAACCCTAACCTCATTGCGCTTCCGCGTCG
TCCTGGCGATACTCGCCCACAACCTCATGCAACCCTAAACGGGGT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
774 bp | 257 aa | 65 | 838 | + | No |
Chemistry : DDE
ORF sequence :
MARYRLHHSLGRRRVIRTLWRWGRKHFSDQKSCRHQKVTDAFLVALLLSRYVFKHPYPSIWWNILGEDRPNLPSYTQAFTRGQRLLEHLEALVSPPLPCT
EVVVDSMPLPVCRPKRGKRCAFPGARWGFGTQGDFFGFKLHAWVSPAGQVMQYLIRPANLHDTTVAYELNRRWVDFAGPQIIGDKGYCALGFIYPPKKNT
RYDTGWRENRHPRLRKRIETVFSQLVESQIRSVQTKTLTSLRFRVVLAILAHNLMQP
EVVVDSMPLPVCRPKRGKRCAFPGARWGFGTQGDFFGFKLHAWVSPAGQVMQYLIRPANLHDTTVAYELNRRWVDFAGPQIIGDKGYCALGFIYPPKKNT
RYDTGWRENRHPRLRKRIETVFSQLVESQIRSVQTKTLTSLRFRVVLAILAHNLMQP
Blast result :
Comments
ISDds4 is 43% aa similar to IS982C.
References
1] Siguier, P. (2008) ISfinder annotation.