ISDds3
- Family IS4
- Group IS10
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Deinococcus deserti | Deinococcus deserti VCD115 plasmid I |
DNA section
IS Length : 1176 bp
Ends
IR Length : 22
IRL : CTCAGCAGCTGACACTTTGAGAGAAATGGCGTCCTGAACGCGATATGGCA
IRR : CTCAGCAGCTGACACTTCGAGATTTTTGCGTACCTGCCACTGAAAAGGGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCATGACCCGTATGGT | GGCGGTGTG | AGTTACCCATGGCA | 9 |
DNA sequence
CTCAGCAGCTGACACTTTGAGAGAAATGGCGTCCTGAACGCGATATGGCAGCACAAAGGGCGGTATCAAGCCCTGTGACGAACAGAGATACCGCCCTGCT
GCATGCTGACACGCTGGCCGCTCATCTGAAAACCCGTCTGCCACACCGTCGTCTGGATGCCCTCCGGAGACTGGCCGAAGTGCTCCTGGCACTCCTCCAG
GCGGAGTCCACGCTGCACCGCAAAATTGCGCTTCACCTGCCCCGTGACGCGTCCCTCGACTCCAAGACCCGCGTGGTGGCGCGCACCCTCCATGATGCGC
AGTTGACCTCGCAGGACGTTCTCGACGTCCTGCTCCCGCTGATCCCCGAGGACAAGCTGACCCTGGTGATGGACCGCACCACCTGGCACTACGGACAGAC
CCCACTGAACATCATGGTGCTGGGCGCGATCCTGGGTGGCGCGGTGGTTCCGCTCGTCTGGACGGTGTTGCCTCACCAGGGCAACAGCAGCACCGCGGCA
CGCATCCTGCTGGTCTCCCGACTGCTGAAGGTGCTGCCCGCATCGCGCTGGGCGGTGCTGATCGCGGACCGGGAGTTCATCGGGCAGGAATGGTGCTCAT
TCCTGCGCTGGAAACGGATTCGACAGTGCCTGCGCATTCGGGAGAACACTCGCATTGACGACGAACTGGCCCGTGACCTGTTCGCTGGTCTGCACCCCGG
TGAAGTGCGCACCCTGTTCGAACGCACCTGGGTGTACGGGGGGTGGATGCAGGTGGTCATCACCCTGTCCCCCGCGGGGGATAGGGTGATCGTCGCCTCG
GATTTGCCCGTGCTGGACGTGCTACGAACGTACCGGAAGAGGTGGAGAATTGAAAGCACCTTCTCCGCTTTAAAGTCGCGCGGGTTGAATCTGGAATCCA
CACACATGACGGCAGCGGACCGGATTTCCAGGCTGTTCGGCTTGCTGTGCATTGCACTGGCCTGGATGGTGCGAGTGGGCCACGATGAGCAGGGAACCGA
CCTGCTGACGGTGGACAAACGGGGTCGCTTGGCTCAAAGCCGGGCGAGGAGCGGCTGGACGCAGCTCAGTCAGGCGGTGCGCTGGTCCCTGGACGCCTTC
TGGGCGCACCTTGAGCTCCTGAAAACTCCCTTTTCAGTGGCAGGTACGCAAAAATCTCGAAGTGTCAGCTGCTGAG
GCATGCTGACACGCTGGCCGCTCATCTGAAAACCCGTCTGCCACACCGTCGTCTGGATGCCCTCCGGAGACTGGCCGAAGTGCTCCTGGCACTCCTCCAG
GCGGAGTCCACGCTGCACCGCAAAATTGCGCTTCACCTGCCCCGTGACGCGTCCCTCGACTCCAAGACCCGCGTGGTGGCGCGCACCCTCCATGATGCGC
AGTTGACCTCGCAGGACGTTCTCGACGTCCTGCTCCCGCTGATCCCCGAGGACAAGCTGACCCTGGTGATGGACCGCACCACCTGGCACTACGGACAGAC
CCCACTGAACATCATGGTGCTGGGCGCGATCCTGGGTGGCGCGGTGGTTCCGCTCGTCTGGACGGTGTTGCCTCACCAGGGCAACAGCAGCACCGCGGCA
CGCATCCTGCTGGTCTCCCGACTGCTGAAGGTGCTGCCCGCATCGCGCTGGGCGGTGCTGATCGCGGACCGGGAGTTCATCGGGCAGGAATGGTGCTCAT
TCCTGCGCTGGAAACGGATTCGACAGTGCCTGCGCATTCGGGAGAACACTCGCATTGACGACGAACTGGCCCGTGACCTGTTCGCTGGTCTGCACCCCGG
TGAAGTGCGCACCCTGTTCGAACGCACCTGGGTGTACGGGGGGTGGATGCAGGTGGTCATCACCCTGTCCCCCGCGGGGGATAGGGTGATCGTCGCCTCG
GATTTGCCCGTGCTGGACGTGCTACGAACGTACCGGAAGAGGTGGAGAATTGAAAGCACCTTCTCCGCTTTAAAGTCGCGCGGGTTGAATCTGGAATCCA
CACACATGACGGCAGCGGACCGGATTTCCAGGCTGTTCGGCTTGCTGTGCATTGCACTGGCCTGGATGGTGCGAGTGGGCCACGATGAGCAGGGAACCGA
CCTGCTGACGGTGGACAAACGGGGTCGCTTGGCTCAAAGCCGGGCGAGGAGCGGCTGGACGCAGCTCAGTCAGGCGGTGCGCTGGTCCCTGGACGCCTTC
TGGGCGCACCTTGAGCTCCTGAAAACTCCCTTTTCAGTGGCAGGTACGCAAAAATCTCGAAGTGTCAGCTGCTGAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
996 bp | 331 aa | 180 | 1175 | + | No |
Chemistry : DDE
ORF sequence :
VLLALLQAESTLHRKIALHLPRDASLDSKTRVVARTLHDAQLTSQDVLDVLLPLIPEDKLTLVMDRTTWHYGQTPLNIMVLGAILGGAVVPLVWTVLPHQ
GNSSTAARILLVSRLLKVLPASRWAVLIADREFIGQEWCSFLRWKRIRQCLRIRENTRIDDELARDLFAGLHPGEVRTLFERTWVYGGWMQVVITLSPAG
DRVIVASDLPVLDVLRTYRKRWRIESTFSALKSRGLNLESTHMTAADRISRLFGLLCIALAWMVRVGHDEQGTDLLTVDKRGRLAQSRARSGWTQLSQAV
RWSLDAFWAHLELLKTPFSVAGTQKSRSVSC
GNSSTAARILLVSRLLKVLPASRWAVLIADREFIGQEWCSFLRWKRIRQCLRIRENTRIDDELARDLFAGLHPGEVRTLFERTWVYGGWMQVVITLSPAG
DRVIVASDLPVLDVLRTYRKRWRIESTFSALKSRGLNLESTHMTAADRISRLFGLLCIALAWMVRVGHDEQGTDLLTVDKRGRLAQSRARSGWTQLSQAV
RWSLDAFWAHLELLKTPFSVAGTQKSRSVSC
Blast result :
Comments
ISDds3 is 57% aa similar to ISDra1.
References
1] Siguier, P. (2008) ISfinder annotation.