ISDds3

  • Family IS4
  • Group IS10
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Deinococcus deserti
Deinococcus deserti VCD115 plasmid I
DNA section
IS Length : 1176 bp

Ends


IR Length : 22

IRL : CTCAGCAGCTGACACTTTGAGAGAAATGGCGTCCTGAACGCGATATGGCA
IRR : CTCAGCAGCTGACACTTCGAGATTTTTGCGTACCTGCCACTGAAAAGGGA

Insertion site


Left flankDirect repeatRight flankDR Length
TCATGACCCGTATGGTGGCGGTGTGAGTTACCCATGGCA9

DNA sequence

CTCAGCAGCTGACACTTTGAGAGAAATGGCGTCCTGAACGCGATATGGCAGCACAAAGGGCGGTATCAAGCCCTGTGACGAACAGAGATACCGCCCTGCT
GCATGCTGACACGCTGGCCGCTCATCTGAAAACCCGTCTGCCACACCGTCGTCTGGATGCCCTCCGGAGACTGGCCGAAGTGCTCCTGGCACTCCTCCAG
GCGGAGTCCACGCTGCACCGCAAAATTGCGCTTCACCTGCCCCGTGACGCGTCCCTCGACTCCAAGACCCGCGTGGTGGCGCGCACCCTCCATGATGCGC
AGTTGACCTCGCAGGACGTTCTCGACGTCCTGCTCCCGCTGATCCCCGAGGACAAGCTGACCCTGGTGATGGACCGCACCACCTGGCACTACGGACAGAC
CCCACTGAACATCATGGTGCTGGGCGCGATCCTGGGTGGCGCGGTGGTTCCGCTCGTCTGGACGGTGTTGCCTCACCAGGGCAACAGCAGCACCGCGGCA
CGCATCCTGCTGGTCTCCCGACTGCTGAAGGTGCTGCCCGCATCGCGCTGGGCGGTGCTGATCGCGGACCGGGAGTTCATCGGGCAGGAATGGTGCTCAT
TCCTGCGCTGGAAACGGATTCGACAGTGCCTGCGCATTCGGGAGAACACTCGCATTGACGACGAACTGGCCCGTGACCTGTTCGCTGGTCTGCACCCCGG
TGAAGTGCGCACCCTGTTCGAACGCACCTGGGTGTACGGGGGGTGGATGCAGGTGGTCATCACCCTGTCCCCCGCGGGGGATAGGGTGATCGTCGCCTCG
GATTTGCCCGTGCTGGACGTGCTACGAACGTACCGGAAGAGGTGGAGAATTGAAAGCACCTTCTCCGCTTTAAAGTCGCGCGGGTTGAATCTGGAATCCA
CACACATGACGGCAGCGGACCGGATTTCCAGGCTGTTCGGCTTGCTGTGCATTGCACTGGCCTGGATGGTGCGAGTGGGCCACGATGAGCAGGGAACCGA
CCTGCTGACGGTGGACAAACGGGGTCGCTTGGCTCAAAGCCGGGCGAGGAGCGGCTGGACGCAGCTCAGTCAGGCGGTGCGCTGGTCCCTGGACGCCTTC
TGGGCGCACCTTGAGCTCCTGAAAACTCCCTTTTCAGTGGCAGGTACGCAAAAATCTCGAAGTGTCAGCTGCTGAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
996 bp331 aa1801175+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

VLLALLQAESTLHRKIALHLPRDASLDSKTRVVARTLHDAQLTSQDVLDVLLPLIPEDKLTLVMDRTTWHYGQTPLNIMVLGAILGGAVVPLVWTVLPHQ
GNSSTAARILLVSRLLKVLPASRWAVLIADREFIGQEWCSFLRWKRIRQCLRIRENTRIDDELARDLFAGLHPGEVRTLFERTWVYGGWMQVVITLSPAG
DRVIVASDLPVLDVLRTYRKRWRIESTFSALKSRGLNLESTHMTAADRISRLFGLLCIALAWMVRVGHDEQGTDLLTVDKRGRLAQSRARSGWTQLSQAV
RWSLDAFWAHLELLKTPFSVAGTQKSRSVSC

 

Blast result :
Comments
ISDds3 is 57% aa similar to ISDra1.
References
1] Siguier, P. (2008) ISfinder annotation.