ISDds2

  • Family IS4
  • Group IS10
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Deinococcus deserti
Deinococcus deserti VCD115
DNA section
IS Length : 1069 bp

Ends


IR Length : 21

IRL : CTGACTACCAGTCAAAACTCGTGAGGGCATGAAAAAAGTCGGCTCCAGTA
IRR : CTGACTACCAGTCAAAACTCGGCATGAGGGCCTGTAATGCCCGCCAGGAC

Insertion site


Left flankDirect repeatRight flankDR Length
GTCTGAGGAGGCTTTTGGACGGATAGTC8

DNA sequence

CTGACTACCAGTCAAAACTCGTGAGGGCATGAAAAAAGTCGGCTCCAGTAGGGTATTTCTGCGTTGAAAACCCGGAGCCGACACCCACACGACAGCCTGC
AGACCGCGCTGCGGTGTGCGTTTCCTCTTGACGGCCGCCGTCTTGAGGTCCTGACGGCGCTGATCCTGGCCATGGTGCAAGCCCGCAGTGTCGTGCTGTA
CACGCTGAAGACTCATGTGCACTTGCCCGGCTCCTTCGACACGCGGTACCAGCGGTTGCGGCGTTTTGTCCGCTTCGAGTTTCCAGACCATTTCTTTGTC
CGCTTCGCGCTGTTCTCCCTCCCAGACGGCGAGCTGAACCTGATCCTGGACCGCACCAATTGGAAACTGGGCAAGCAGGATGTCAATATCCTGCTGCTCT
CTGCAGTCTGGGACAGCTTCAGTCTGCCGTTGGTGTGGGCACTGCTCCCCCATGGGGGAAGCAGCTCGCATCAGGAGCGCTTCGCGCACCTGTTGCGCTT
TGTGCGGTGCTGCTCCGAGCGACACATCGGGAGCCTCCTCGCGGATCGGGAGTTCATCGGGAAATCGTGGTTTACCTTTCTTGATCAGCACGGGATTGCG
CCCTGTATCCGCCTCCCGGCAACGGCGACGATCGGGACCGGCAAACTGCCGGTCTCGTACGGCGTGTCCTCGCGCCTGTGTGCCACCAAGAATACTGCTG
ACGAGGTGCTGTACCTCGCGTACCGGGGTTACGCTTCAGTGAATCTCCGCCGCTATGCTCAGCGCTGGCAGGCGGAAAACCTGCACTCCGCCTTGAAAAC
CAGAGGCTTCAACCTGGAAGACACGGGCCTGACGCAGGCAGAGCGCGTCTCGACCGTGCTGACCTGTGTGTCGGCTGCTTTTATCTGGGCCTACGTAACG
TGCCAGGTCCTGGCTGCCAAGCAGCCCGTGAAACGGAAGGAAGACGGATACCGTGCGGTATCCGTCTTCCGACTGGGACTCGATCATCTTCAGGATCTGC
TACTCCATCCATCACTATCGTCCTGGCGGGCATTACAGGCCCTCATGCCGAGTTTTGACTGGTAGTCAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1002 bp333 aa641065+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

LKTRSRHPHDSLQTALRCAFPLDGRRLEVLTALILAMVQARSVVLYTLKTHVHLPGSFDTRYQRLRRFVRFEFPDHFFVRFALFSLPDGELNLILDRTNW
KLGKQDVNILLLSAVWDSFSLPLVWALLPHGGSSSHQERFAHLLRFVRCCSERHIGSLLADREFIGKSWFTFLDQHGIAPCIRLPATATIGTGKLPVSYG
VSSRLCATKNTADEVLYLAYRGYASVNLRRYAQRWQAENLHSALKTRGFNLEDTGLTQAERVSTVLTCVSAAFIWAYVTCQVLAAKQPVKRKEDGYRAVS
VFRLGLDHLQDLLLHPSLSSWRALQALMPSFDW

 

Blast result :
Comments
ISDds2 is 48% aa similar to ISDra1.
References
1] Siguier, P. (2008) ISfinder direct annotation.