ISDds2
- Family IS4
- Group IS10
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Deinococcus deserti | Deinococcus deserti VCD115 |
DNA section
IS Length : 1069 bp
Ends
IR Length : 21
IRL : CTGACTACCAGTCAAAACTCGTGAGGGCATGAAAAAAGTCGGCTCCAGTA
IRR : CTGACTACCAGTCAAAACTCGGCATGAGGGCCTGTAATGCCCGCCAGGAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTCTGAGGAG | GCTTTTGG | ACGGATAGTC | 8 |
DNA sequence
CTGACTACCAGTCAAAACTCGTGAGGGCATGAAAAAAGTCGGCTCCAGTAGGGTATTTCTGCGTTGAAAACCCGGAGCCGACACCCACACGACAGCCTGC
AGACCGCGCTGCGGTGTGCGTTTCCTCTTGACGGCCGCCGTCTTGAGGTCCTGACGGCGCTGATCCTGGCCATGGTGCAAGCCCGCAGTGTCGTGCTGTA
CACGCTGAAGACTCATGTGCACTTGCCCGGCTCCTTCGACACGCGGTACCAGCGGTTGCGGCGTTTTGTCCGCTTCGAGTTTCCAGACCATTTCTTTGTC
CGCTTCGCGCTGTTCTCCCTCCCAGACGGCGAGCTGAACCTGATCCTGGACCGCACCAATTGGAAACTGGGCAAGCAGGATGTCAATATCCTGCTGCTCT
CTGCAGTCTGGGACAGCTTCAGTCTGCCGTTGGTGTGGGCACTGCTCCCCCATGGGGGAAGCAGCTCGCATCAGGAGCGCTTCGCGCACCTGTTGCGCTT
TGTGCGGTGCTGCTCCGAGCGACACATCGGGAGCCTCCTCGCGGATCGGGAGTTCATCGGGAAATCGTGGTTTACCTTTCTTGATCAGCACGGGATTGCG
CCCTGTATCCGCCTCCCGGCAACGGCGACGATCGGGACCGGCAAACTGCCGGTCTCGTACGGCGTGTCCTCGCGCCTGTGTGCCACCAAGAATACTGCTG
ACGAGGTGCTGTACCTCGCGTACCGGGGTTACGCTTCAGTGAATCTCCGCCGCTATGCTCAGCGCTGGCAGGCGGAAAACCTGCACTCCGCCTTGAAAAC
CAGAGGCTTCAACCTGGAAGACACGGGCCTGACGCAGGCAGAGCGCGTCTCGACCGTGCTGACCTGTGTGTCGGCTGCTTTTATCTGGGCCTACGTAACG
TGCCAGGTCCTGGCTGCCAAGCAGCCCGTGAAACGGAAGGAAGACGGATACCGTGCGGTATCCGTCTTCCGACTGGGACTCGATCATCTTCAGGATCTGC
TACTCCATCCATCACTATCGTCCTGGCGGGCATTACAGGCCCTCATGCCGAGTTTTGACTGGTAGTCAG
AGACCGCGCTGCGGTGTGCGTTTCCTCTTGACGGCCGCCGTCTTGAGGTCCTGACGGCGCTGATCCTGGCCATGGTGCAAGCCCGCAGTGTCGTGCTGTA
CACGCTGAAGACTCATGTGCACTTGCCCGGCTCCTTCGACACGCGGTACCAGCGGTTGCGGCGTTTTGTCCGCTTCGAGTTTCCAGACCATTTCTTTGTC
CGCTTCGCGCTGTTCTCCCTCCCAGACGGCGAGCTGAACCTGATCCTGGACCGCACCAATTGGAAACTGGGCAAGCAGGATGTCAATATCCTGCTGCTCT
CTGCAGTCTGGGACAGCTTCAGTCTGCCGTTGGTGTGGGCACTGCTCCCCCATGGGGGAAGCAGCTCGCATCAGGAGCGCTTCGCGCACCTGTTGCGCTT
TGTGCGGTGCTGCTCCGAGCGACACATCGGGAGCCTCCTCGCGGATCGGGAGTTCATCGGGAAATCGTGGTTTACCTTTCTTGATCAGCACGGGATTGCG
CCCTGTATCCGCCTCCCGGCAACGGCGACGATCGGGACCGGCAAACTGCCGGTCTCGTACGGCGTGTCCTCGCGCCTGTGTGCCACCAAGAATACTGCTG
ACGAGGTGCTGTACCTCGCGTACCGGGGTTACGCTTCAGTGAATCTCCGCCGCTATGCTCAGCGCTGGCAGGCGGAAAACCTGCACTCCGCCTTGAAAAC
CAGAGGCTTCAACCTGGAAGACACGGGCCTGACGCAGGCAGAGCGCGTCTCGACCGTGCTGACCTGTGTGTCGGCTGCTTTTATCTGGGCCTACGTAACG
TGCCAGGTCCTGGCTGCCAAGCAGCCCGTGAAACGGAAGGAAGACGGATACCGTGCGGTATCCGTCTTCCGACTGGGACTCGATCATCTTCAGGATCTGC
TACTCCATCCATCACTATCGTCCTGGCGGGCATTACAGGCCCTCATGCCGAGTTTTGACTGGTAGTCAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1002 bp | 333 aa | 64 | 1065 | + | No |
Chemistry : DDE
ORF sequence :
LKTRSRHPHDSLQTALRCAFPLDGRRLEVLTALILAMVQARSVVLYTLKTHVHLPGSFDTRYQRLRRFVRFEFPDHFFVRFALFSLPDGELNLILDRTNW
KLGKQDVNILLLSAVWDSFSLPLVWALLPHGGSSSHQERFAHLLRFVRCCSERHIGSLLADREFIGKSWFTFLDQHGIAPCIRLPATATIGTGKLPVSYG
VSSRLCATKNTADEVLYLAYRGYASVNLRRYAQRWQAENLHSALKTRGFNLEDTGLTQAERVSTVLTCVSAAFIWAYVTCQVLAAKQPVKRKEDGYRAVS
VFRLGLDHLQDLLLHPSLSSWRALQALMPSFDW
KLGKQDVNILLLSAVWDSFSLPLVWALLPHGGSSSHQERFAHLLRFVRCCSERHIGSLLADREFIGKSWFTFLDQHGIAPCIRLPATATIGTGKLPVSYG
VSSRLCATKNTADEVLYLAYRGYASVNLRRYAQRWQAENLHSALKTRGFNLEDTGLTQAERVSTVLTCVSAAFIWAYVTCQVLAAKQPVKRKEDGYRAVS
VFRLGLDHLQDLLLHPSLSSWRALQALMPSFDW
Blast result :
Comments
ISDds2 is 48% aa similar to ISDra1.
References
1] Siguier, P. (2008) ISfinder direct annotation.