ISDac1
- Family IS3
- Group IS3
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAEW02000001 | ND | Desulfuromonas acetoxidans | Desulfuromonas acetoxidans DSM 684 |
DNA section
IS Length : 1239 bp
Ends
IR Length : 22/26
IRL : TGTAGTGGTCTACTAAACTTGGACACCCACAAAGGTGGTAACATCCACCT
IRR : TGTAGTGGTCAACTATTTTTGGACACAGATATAAGTTCTTTTTCCGCTAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGCCGGTTTTTGC | ATC | CTTTTGAGCGGC | 3 |
DNA sequence
TGTAGTGGTCTACTAAACTTGGACACCCACAAAGGTGGTAACATCCACCTAAACGAGAAAGGGGTCTAAGGACTATGGGAAGAAAAATATTCACAAATGA
ATTCAAGGTTGAATGTGCCAGCCTTGTTTTGGATCAGGGATACAGTGTCCCAGATGCTGCCCGAGTTATGGATGTTGGAGAAACGGCCATGCGTCGTTGG
GTAAAGCAGCTCAAACAGGAACGAGCTGGGACGACACCGGAAACTCCAGCCCTTACAGAGGACAAAAAGCGTATCCAGGAACTCGAAGCCCATATTCGTC
GTCTGGAGAAAGAGAAGCAAATCCTAAAAAAGGCTACCGCTCTCTTAATGTCGGAAGACAAGCTTCGTTTGAGTTGATCAGTACATTGAGAGAGCATGAC
TGCGTTTGTGTCCTTTGCCGTCTTTTTGATGTTTCGCGTTCTAGCTACTATGCCTATTTGAATCGTCGAGCTCATCCAGATACTGAACGCATCAAGTTAC
GTATTCGGATCAAGGAGTTGTTCAATAAAAGTCGTTATTCAGCTGGAAGCCGCAGTCTTACCAACATGTTACGCAGTGAAGGCATCACCATAGGACGTTT
CAAAGTACGTCGTCTGATGCGTGAGGCGAGCTTATTCAGTAAACAACCTAAACCACGTTTGTACAGAGTTGCCAAAGTAGAACATCCAAAGATTCCGAAC
CTGTTGAATCGGGATTTTGATGCGAAGAGGAAAAACCAGACATGGTGTAGTGATATTACCTATGTTCGAGTTGGAAAACGGTGGATTTATGTCGCTGCGG
TATTAGATCTTTACACTCGGCGTGTTGTTGGGTTGAGCTTATCAGAAAACTGTGACGCACAACTTGCAGTTAACGCTGTCAAAAACGCTTATCGGACAAG
GAAAAAGCCAACTGGGGTTTTGGTTCACACAGACCAGGGACAACAATATGGCAGTGATTTGTTCTGTCTCCAGCTTCGATGCTATCAGATGAAACAGAGC
ATGAGTCGGCGAGGAAATTGCTGGGATAATGCACCAATGGAGCGTTTGTTTCGCAGTTACAAAAGCGAATGGATGCCAAAAGGTGGCTATCAAACGTTTG
CAGAAGCACAGCTCGACATCGAGCACTATTTTATGAACTATTACAACTGGAGCAGACCTCATCAAAGAAATAAAGGAATGGCTCCGGCTGTAGCGGAAAA
AGAACTTATATCTGTGTCCAAAAATAGTTGACCACTACA
ATTCAAGGTTGAATGTGCCAGCCTTGTTTTGGATCAGGGATACAGTGTCCCAGATGCTGCCCGAGTTATGGATGTTGGAGAAACGGCCATGCGTCGTTGG
GTAAAGCAGCTCAAACAGGAACGAGCTGGGACGACACCGGAAACTCCAGCCCTTACAGAGGACAAAAAGCGTATCCAGGAACTCGAAGCCCATATTCGTC
GTCTGGAGAAAGAGAAGCAAATCCTAAAAAAGGCTACCGCTCTCTTAATGTCGGAAGACAAGCTTCGTTTGAGTTGATCAGTACATTGAGAGAGCATGAC
TGCGTTTGTGTCCTTTGCCGTCTTTTTGATGTTTCGCGTTCTAGCTACTATGCCTATTTGAATCGTCGAGCTCATCCAGATACTGAACGCATCAAGTTAC
GTATTCGGATCAAGGAGTTGTTCAATAAAAGTCGTTATTCAGCTGGAAGCCGCAGTCTTACCAACATGTTACGCAGTGAAGGCATCACCATAGGACGTTT
CAAAGTACGTCGTCTGATGCGTGAGGCGAGCTTATTCAGTAAACAACCTAAACCACGTTTGTACAGAGTTGCCAAAGTAGAACATCCAAAGATTCCGAAC
CTGTTGAATCGGGATTTTGATGCGAAGAGGAAAAACCAGACATGGTGTAGTGATATTACCTATGTTCGAGTTGGAAAACGGTGGATTTATGTCGCTGCGG
TATTAGATCTTTACACTCGGCGTGTTGTTGGGTTGAGCTTATCAGAAAACTGTGACGCACAACTTGCAGTTAACGCTGTCAAAAACGCTTATCGGACAAG
GAAAAAGCCAACTGGGGTTTTGGTTCACACAGACCAGGGACAACAATATGGCAGTGATTTGTTCTGTCTCCAGCTTCGATGCTATCAGATGAAACAGAGC
ATGAGTCGGCGAGGAAATTGCTGGGATAATGCACCAATGGAGCGTTTGTTTCGCAGTTACAAAAGCGAATGGATGCCAAAAGGTGGCTATCAAACGTTTG
CAGAAGCACAGCTCGACATCGAGCACTATTTTATGAACTATTACAACTGGAGCAGACCTCATCAAAGAAATAAAGGAATGGCTCCGGCTGTAGCGGAAAA
AGAACTTATATCTGTGTCCAAAAATAGTTGACCACTACA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
303 bp | 100 aa | 75 | 377 | + | No |
Description : First part of the transposase
ORF sequence :
MGRKIFTNEFKVECASLVLDQGYSVPDAARVMDVGETAMRRWVKQLKQERAGTTPETPALTEDKKRIQELEAHIRRLEKEKQILKKATALLMSEDKLRLS
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1119 bp | 372 aa | 113 | 1231 | + | No |
Description : Second part of the transposase
ORF sequence :
MCQPCFGSGIQCPRCCPSYGCWRNGHASLGKAAQTGTSWDDTGNSSPYRGQKAYPGTRSPYSSSGEREANPKKGYRSLNVGRQASFELISTLREHDCVCV
LCRLFDVSRSSYYAYLNRRAHPDTERIKLRIRIKELFNKSRYSAGSRSLTNMLRSEGITIGRFKVRRLMREASLFSKQPKPRLYRVAKVEHPKIPNLLNR
DFDAKRKNQTWCSDITYVRVGKRWIYVAAVLDLYTRRVVGLSLSENCDAQLAVNAVKNAYRTRKKPTGVLVHTDQGQQYGSDLFCLQLRCYQMKQSMSRR
GNCWDNAPMERLFRSYKSEWMPKGGYQTFAEAQLDIEHYFMNYYNWSRPHQRNKGMAPAVAEKELISVSKNS
LCRLFDVSRSSYYAYLNRRAHPDTERIKLRIRIKELFNKSRYSAGSRSLTNMLRSEGITIGRFKVRRLMREASLFSKQPKPRLYRVAKVEHPKIPNLLNR
DFDAKRKNQTWCSDITYVRVGKRWIYVAAVLDLYTRRVVGLSLSENCDAQLAVNAVKNAYRTRKKPTGVLVHTDQGQQYGSDLFCLQLRCYQMKQSMSRR
GNCWDNAPMERLFRSYKSEWMPKGGYQTFAEAQLDIEHYFMNYYNWSRPHQRNKGMAPAVAEKELISVSKNS
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1157 bp | 385 aa | 75 | 1231 | + | Yes |
Chemistry : DDE
ORF sequence :
MGRKIFTNEFKVECASLVLDQGYSVPDAARVMDVGETAMRRWVKQLKQERAGTTPETPALTEDKKRIQELEAHIRRLEKEKQILKKGYRSLNVGRQASFE
LISTLREHDCVCVLCRLFDVSRSSYYAYLNRRAHPDTERIKLRIRIKELFNKSRYSAGSRSLTNMLRSEGITIGRFKVRRLMREASLFSKQPKPRLYRVA
KVEHPKIPNLLNRDFDAKRKNQTWCSDITYVRVGKRWIYVAAVLDLYTRRVVGLSLSENCDAQLAVNAVKNAYRTRKKPTGVLVHTDQGQQYGSDLFCLQ
LRCYQMKQSMSRRGNCWDNAPMERLFRSYKSEWMPKGGYQTFAEAQLDIEHYFMNYYNWSRPHQRNKGMAPAVAEKELISVSKNS
LISTLREHDCVCVLCRLFDVSRSSYYAYLNRRAHPDTERIKLRIRIKELFNKSRYSAGSRSLTNMLRSEGITIGRFKVRRLMREASLFSKQPKPRLYRVA
KVEHPKIPNLLNRDFDAKRKNQTWCSDITYVRVGKRWIYVAAVLDLYTRRVVGLSLSENCDAQLAVNAVKNAYRTRKKPTGVLVHTDQGQQYGSDLFCLQ
LRCYQMKQSMSRRGNCWDNAPMERLFRSYKSEWMPKGGYQTFAEAQLDIEHYFMNYYNWSRPHQRNKGMAPAVAEKELISVSKNS
Blast result :
Comments
Genome in progress.
ISDac1 is 72% (ORFAB) aa similar to IS222. The third ORf is a putative transposase reconstructed in silico by possible -1 frameshift.
ISDac1 is 72% (ORFAB) aa similar to IS222. The third ORf is a putative transposase reconstructed in silico by possible -1 frameshift.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T., Hammon,N., Israni,S., Pitluck,S. and Richardson,P. (2005) Direct submission GenBank.