ISCku7
- Family IS66
- Group ISBst12
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CT573072 | ND | Candidatus Kuenenia | Candidatus Kuenenia stuttgartiensis |
DNA section
IS Length : 2368 bp
Ends
IR Length : 28
IRL : GTAACACTTTAGTTCTTTGAAAAATTAATAGCGAAAAAAGGTAAAAAAAG
IRR : GTAACACTTTAGTTCTTTGAAAAATTAACAAGCGATATTATAAGTTAAGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACGGCAATCA | AAATAATT | AAGTGAAAGG | 8 |
GATATACTCT | TTTTCTGG | GAAATCCGTA | 8 |
GATTAATAAA | CAATTTTt/g | GCCCTTTATA | 10 |
DNA sequence
GTAACACTTTAGTTCTTTGAAAAATTAATAGCGAAAAAAGGTAAAAAAAGCTGGCGTCTGTTTTTCCTTTGTGGTATAAAAGGCTTCAATAAAGGGAAAC
AGTTTATGAAGCCTATCATATTCCAATACCGTTCACGAAAACTGCATGCGGACGATATCGCCTTTATAAAGGCGCTCATCGAGCAGCATTTTCTCAGAGG
TCGGACTTATATTTCCTGCGAACTATGCAAGCATTGGAACTGGGTGCAGCCCAATGGCAAACATAAAGAATACGCAGCACGAGACCTCCTTTTGAGATTA
GAAGAACAGGGATTGATAACGCTTCCTCCACGTATACGGGCCAAAAACAATCTGAAACCCAAGGTCTTTGTCCAGACACCCCTTTTCGTCAGGAGACCAC
TAGAAGGTAAAATCACAGAGTATGAAAACCTGACAATCCATGTGGTAAAAGACCCTCAGGAAAGATATCTCTGGGAGTATCTCTTCCAACACTATCACTA
CCTCGGCAATCCCCGGCTTGTTGGCGAACACCTCAGACACATCGTACGTATAGGCAATCAGGTTGTTGCCTGCCTGGGGTGGGCAAGCGCCGCATGGAAA
GTCAAAGACCGTGATCGTTTCATTGAATGGGATGAGACGACTAAACGTACACACTTACATTTGATTGCAAATAACGTACGATTTCTCATTCTACCATGGG
TTAAGATCAAACACCTTGCATCCAAGGTATTGTCACTTGCCCTCAGACGTCTGTCAGATGACTGGAATACCGTTTACGGCCATCCCGTTTATTTAGCCGA
AACCTTTGTTGATACCGCGCGGTTTAAGGGTACCTGCTATCAGGCGGCCAATTGGATTCGTGCTGGCAAAACCAAAGGGAGCGCAAAACGGGGCAATCGC
TATCTGTATCATGGCCAACCTAAGGATCTCTACCTCTACCCTCTTCAAAAAAACTTTCGGAGGTTTCTTGACTGTGACCAGGGATGAAGCCATAGCTATT
TTGGAGATGGACAGAGAGGATGCGATTCAAGCCATCCTGATACTGGCGGAGAAAGCAGAAAAATATGACCGGCTTTGCGATAAACCGGGTCCGACTACCC
CTTCCGGTTCGATACCGCCCTATCTAAAGCCCACAAAGAAAAAGAGAAAACGGCCTTGTGGCAGGAAAAAGGGACATAAGGGCGTTTGCCGGAAACGACC
TGAAACAGTAACTGCCTATCAAACGCATTCCATGGAGAGTTGCCCTGATTGCCACCAGCCATTACAAAAACCGGTAAGAACTTATAAGCGATACATCGAA
GATATTCCACGCCTTGACCCTGTTGTGACGGAACATACAGTTCATGGTTACTGGTGTGCTTGTTGCAAAAAGATAGTTCAACCCAAGGTCACAGATGCGT
TGCATGGCGCCCGACTAGGATTGCGCCTTGTTGTCTTTACCGCATGGCTTCACTACTTAATCGGTATCAGTGTAAACAACATCGTAAAGATGCTTTCCGT
ATTTTTCAACCTTCAAATAAGCGCCGGCGGTCTAACCCAGGCATGGAAATCCCTTGCAACACTCCTGGAGCCACAGTATAACGAGATTGGCCAAAAAGTC
TCCGCAAGCGCTGTCTTACATGCAGATGAAACCGGATGGAGGTTGAATGGAAAAACCCATTGGCTATGGTGTTTTACAACACAAAAACTCTGCTACTATC
TCATAACACCAAGTCGGGGGTCTCCTGTCATAAAAAAACTCTTGGGCATTCTATTTGGTGGTATCCTGATCTGTGACTTTCTGGGCGCTTACAACAAGAT
AAGCGCACTGGCAAAGCAGCGGTGTTTCTATCATCTGTTCACGGAACTCGTGAAAGTAGATGCCCACAACCATTCTGCCGCATGGAAAGCTTTCCGGAAA
AAACTCTCCCGGTTGCTCAAGGATGCCATCCGGTTATCAGAGAAAAAAAACCAGATAAGCCTGGTATGCTTTCTTCGGCTAAAAAAAAGATTGTATCGCA
GGCTTGAACAGTTTTTGGCAACGCCTTGTCAGGATAAAGACGTACAAAGATTGACCAAACGCCTGAAGCGCCATAAACAGGAACTCTTTACGTTCCTGGA
ACATGAAGGTGTGAGTCCCTATAATAATCATGCCGAGCAACAGATGCGAAAGCCAGTATTGACCCGAAAGGTATCACAACAGAATCGTTCTGTTCAGGGC
GCCAATACCCAGGCTATCCTTATGACGTTGCTTCGCTCTGCAGAATTGCAAGGAGACAACCCCGTGGAAAACCTTCTGGCATACGCCAAAAAAGCTCTTT
TAACAAAAACCACTTCCGGCTTAACTTATAATATCGCTTGTTAATTTTTCAAAGAACTAAAGTGTTAC
AGTTTATGAAGCCTATCATATTCCAATACCGTTCACGAAAACTGCATGCGGACGATATCGCCTTTATAAAGGCGCTCATCGAGCAGCATTTTCTCAGAGG
TCGGACTTATATTTCCTGCGAACTATGCAAGCATTGGAACTGGGTGCAGCCCAATGGCAAACATAAAGAATACGCAGCACGAGACCTCCTTTTGAGATTA
GAAGAACAGGGATTGATAACGCTTCCTCCACGTATACGGGCCAAAAACAATCTGAAACCCAAGGTCTTTGTCCAGACACCCCTTTTCGTCAGGAGACCAC
TAGAAGGTAAAATCACAGAGTATGAAAACCTGACAATCCATGTGGTAAAAGACCCTCAGGAAAGATATCTCTGGGAGTATCTCTTCCAACACTATCACTA
CCTCGGCAATCCCCGGCTTGTTGGCGAACACCTCAGACACATCGTACGTATAGGCAATCAGGTTGTTGCCTGCCTGGGGTGGGCAAGCGCCGCATGGAAA
GTCAAAGACCGTGATCGTTTCATTGAATGGGATGAGACGACTAAACGTACACACTTACATTTGATTGCAAATAACGTACGATTTCTCATTCTACCATGGG
TTAAGATCAAACACCTTGCATCCAAGGTATTGTCACTTGCCCTCAGACGTCTGTCAGATGACTGGAATACCGTTTACGGCCATCCCGTTTATTTAGCCGA
AACCTTTGTTGATACCGCGCGGTTTAAGGGTACCTGCTATCAGGCGGCCAATTGGATTCGTGCTGGCAAAACCAAAGGGAGCGCAAAACGGGGCAATCGC
TATCTGTATCATGGCCAACCTAAGGATCTCTACCTCTACCCTCTTCAAAAAAACTTTCGGAGGTTTCTTGACTGTGACCAGGGATGAAGCCATAGCTATT
TTGGAGATGGACAGAGAGGATGCGATTCAAGCCATCCTGATACTGGCGGAGAAAGCAGAAAAATATGACCGGCTTTGCGATAAACCGGGTCCGACTACCC
CTTCCGGTTCGATACCGCCCTATCTAAAGCCCACAAAGAAAAAGAGAAAACGGCCTTGTGGCAGGAAAAAGGGACATAAGGGCGTTTGCCGGAAACGACC
TGAAACAGTAACTGCCTATCAAACGCATTCCATGGAGAGTTGCCCTGATTGCCACCAGCCATTACAAAAACCGGTAAGAACTTATAAGCGATACATCGAA
GATATTCCACGCCTTGACCCTGTTGTGACGGAACATACAGTTCATGGTTACTGGTGTGCTTGTTGCAAAAAGATAGTTCAACCCAAGGTCACAGATGCGT
TGCATGGCGCCCGACTAGGATTGCGCCTTGTTGTCTTTACCGCATGGCTTCACTACTTAATCGGTATCAGTGTAAACAACATCGTAAAGATGCTTTCCGT
ATTTTTCAACCTTCAAATAAGCGCCGGCGGTCTAACCCAGGCATGGAAATCCCTTGCAACACTCCTGGAGCCACAGTATAACGAGATTGGCCAAAAAGTC
TCCGCAAGCGCTGTCTTACATGCAGATGAAACCGGATGGAGGTTGAATGGAAAAACCCATTGGCTATGGTGTTTTACAACACAAAAACTCTGCTACTATC
TCATAACACCAAGTCGGGGGTCTCCTGTCATAAAAAAACTCTTGGGCATTCTATTTGGTGGTATCCTGATCTGTGACTTTCTGGGCGCTTACAACAAGAT
AAGCGCACTGGCAAAGCAGCGGTGTTTCTATCATCTGTTCACGGAACTCGTGAAAGTAGATGCCCACAACCATTCTGCCGCATGGAAAGCTTTCCGGAAA
AAACTCTCCCGGTTGCTCAAGGATGCCATCCGGTTATCAGAGAAAAAAAACCAGATAAGCCTGGTATGCTTTCTTCGGCTAAAAAAAAGATTGTATCGCA
GGCTTGAACAGTTTTTGGCAACGCCTTGTCAGGATAAAGACGTACAAAGATTGACCAAACGCCTGAAGCGCCATAAACAGGAACTCTTTACGTTCCTGGA
ACATGAAGGTGTGAGTCCCTATAATAATCATGCCGAGCAACAGATGCGAAAGCCAGTATTGACCCGAAAGGTATCACAACAGAATCGTTCTGTTCAGGGC
GCCAATACCCAGGCTATCCTTATGACGTTGCTTCGCTCTGCAGAATTGCAAGGAGACAACCCCGTGGAAAACCTTCTGGCATACGCCAAAAAAGCTCTTT
TAACAAAAACCACTTCCGGCTTAACTTATAATATCGCTTGTTAATTTTTCAAAGAACTAAAGTGTTAC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
882 bp | 293 aa | 106 | 987 | + | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MKPIIFQYRSRKLHADDIAFIKALIEQHFLRGRTYISCELCKHWNWVQPNGKHKEYAARDLLLRLEEQGLITLPPRIRAKNNLKPKVFVQTPLFVRRPLE
GKITEYENLTIHVVKDPQERYLWEYLFQHYHYLGNPRLVGEHLRHIVRIGNQVVACLGWASAAWKVKDRDRFIEWDETTKRTHLHLIANNVRFLILPWVK
IKHLASKVLSLALRRLSDDWNTVYGHPVYLAETFVDTARFKGTCYQAANWIRAGKTKGSAKRGNRYLYHGQPKDLYLYPLQKNFRRFLDCDQG
GKITEYENLTIHVVKDPQERYLWEYLFQHYHYLGNPRLVGEHLRHIVRIGNQVVACLGWASAAWKVKDRDRFIEWDETTKRTHLHLIANNVRFLILPWVK
IKHLASKVLSLALRRLSDDWNTVYGHPVYLAETFVDTARFKGTCYQAANWIRAGKTKGSAKRGNRYLYHGQPKDLYLYPLQKNFRRFLDCDQG
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1371 bp | 456 aa | 974 | 2344 | + | No |
Chemistry : DDE
ORF sequence :
VTRDEAIAILEMDREDAIQAILILAEKAEKYDRLCDKPGPTTPSGSIPPYLKPTKKKRKRPCGRKKGHKGVCRKRPETVTAYQTHSMESCPDCHQPLQKP
VRTYKRYIEDIPRLDPVVTEHTVHGYWCACCKKIVQPKVTDALHGARLGLRLVVFTAWLHYLIGISVNNIVKMLSVFFNLQISAGGLTQAWKSLATLLEP
QYNEIGQKVSASAVLHADETGWRLNGKTHWLWCFTTQKLCYYLITPSRGSPVIKKLLGILFGGILICDFLGAYNKISALAKQRCFYHLFTELVKVDAHNH
SAAWKAFRKKLSRLLKDAIRLSEKKNQISLVCFLRLKKRLYRRLEQFLATPCQDKDVQRLTKRLKRHKQELFTFLEHEGVSPYNNHAEQQMRKPVLTRKV
SQQNRSVQGANTQAILMTLLRSAELQGDNPVENLLAYAKKALLTKTTSGLTYNIAC
VRTYKRYIEDIPRLDPVVTEHTVHGYWCACCKKIVQPKVTDALHGARLGLRLVVFTAWLHYLIGISVNNIVKMLSVFFNLQISAGGLTQAWKSLATLLEP
QYNEIGQKVSASAVLHADETGWRLNGKTHWLWCFTTQKLCYYLITPSRGSPVIKKLLGILFGGILICDFLGAYNKISALAKQRCFYHLFTELVKVDAHNH
SAAWKAFRKKLSRLLKDAIRLSEKKNQISLVCFLRLKKRLYRRLEQFLATPCQDKDVQRLTKRLKRHKQELFTFLEHEGVSPYNNHAEQQMRKPVLTRKV
SQQNRSVQGANTQAILMTLLRSAELQGDNPVENLLAYAKKALLTKTTSGLTYNIAC
Blast result :
Comments
ISCku7 is 46% aa similar to ISArch7.
The first ORF is a passenger gene annotated as unknown protein.
The first ORF is a passenger gene annotated as unknown protein.
References
1] Strous,M., Pelletier,E., Mangenot,S., Rattei,T., Lehner,A., Taylor,M.W., Horn,M., Daims,H., Bartol-Mavel,D., Wincker,P., Barbe,V., Fonknechten,N., Vallenet,D., Segurens,B., Schenowitz-Truong,C., Medigue,C., Collingro,A., Snel,B., Dutilh,B.E., Op den Camp,H.J., van der Drift,C., Cirpus,I., van de Pas-Schoonen,K.T., Harhangi,H.R., van Niftrik,L., Schmid,M., Keltjens,J., van de Vossenberg,J., Kartal,B., Meier,H., Frishman,D., Huynen,M.A., Mewes,H.W., Weissenbach,J., Jetten,M.S., Wagner,M. and Le Paslier,D. (2006) Nature 440 (7085), 790-794.
2] ISfinder annotation (2008).
2] ISfinder annotation (2008).