ISArch19
- Family IS66
- Group ISBst12
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AY714834 | ND | uncultured archaeon | uncultured archaeon GZfos21B5 |
DNA section
IS Length : 1540 bp
Ends
IR Length : 14
IRL : GTATTTGTATAGCTACATAACTTTCCCAGCGATATTAATATCCTAGCTGG
IRR : GTATTTGTATAGCTCACCTCAAACAAAGCTCATTGACGAGCAATTTTTTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATTAAATTAT | CT | TTTTTTTATG | 2 |
DNA sequence
GTATTTGTATAGCTACATAACTTTCCCAGCGATATTAATATCCTAGCTGGTAATGGAAATAGCCTATTTACTTAATATTATCCTCAGGAGACAAACATAT
TTAAATAGGCAGGGGCACATTACTTTTTTGATGATGGGGGCCTAAATAGCGGGATGTCTGTAACAGCAAGCGATTATCAAAGTTTGAAACTCAAGATAAA
AGAGCTAGAGGAAATAGTAGCAGAGTTGAAAAGCGATAACGAGGCGAAAGCAAAGATAATTGCTGAGCAGGCAAAACTAATAGAAGAGCTAAAAGCTAAA
CTCGCCAAATATGAAAATCCGCATACTCCTTCTTCCGCGCGAAGATATAAGAAGAACTCAGAATCCAAGAACTCATCAAAGAAGCGTGGTGCTCCAAATG
GGCATAGAGGGGCAACCAGGCCAACACCTGAGCCTGACAGGGTGGTGGAAGTTACTACCGATCAATGTGACCTTTGTGGCAGTGCCAATTTAGAGGAGTG
TGGCGTTGAAAAGCAGGTTATCGAGGAACTCCCACCACCGCCCAAGATCGAGGTTATTCAGTTCAATCGTCACAAATATAAGTGCCAGGACTGTGGACAT
GTGTTTATCGCAAAGGACGAGAAATGCCCTCAAAAGGGTAGATTCGGCGTGGATCTACTTGTATATCTGATAATGTTGAAATTTAGCCTTCGGGGCGTTC
TTCGTAGAATCAAGGATTTTACTTTACATCTCAATTCATTTGACATCACTCCTAAGGGCATTCAGGATGCAATTCTCCGTGTGGGAGAAGCATGTAAGAC
TGCTTATTCCGCAAATATCGATAAAGTCAGAGCTGCGACGTGGAATTATATGGACGAGACGGGGATTCGGGTTCTCGGTAAAAACTATTGGCTCTGGACT
TTCAGGACGCCAGAGGATGAAGTGGTGGTAGTAATCAGACCATCGAGGGGCCAGAACGTTTTGCGTGAAATTTTCGGTGGGGATATCAACGGTGCAGGCG
TTGTCGATGGTTGGCGAGCCTATAATATCATTCCCGTTTTACAGCGCTGCTGGGCGCACCTGATAAGAGACGTAGATGCGTTCATTGAACAACCTGGCGG
TAAGGAGCTGTCAGAAGCCATTCATGAAAAATTCAAGGCATTGAAGGGGTTCCTCGGTAAAGACCCGCCGACATCCATGGAAGAACGGAAACAGCAGAAA
AAAGTGTGGGATAGGGAAATGGCAGAGTTAGCGGAGCAATTCAGCAAGTTCACGGAACTGAAGAAGCCGGTAACTTATATCAGAAACGGTCTGGGAAATT
GGTACACATGCCTACTTTATCCTGGTATGGAGCCAACAAACAATCTCAGCGAGCAGGTTATCAGGGAGCATGTGCTCATGCGGAAGATCATAGGTACCTT
TAGATCTGAGGCGGGCGCTGAATATTACCAGTACATCGCTTCGGTCTTCGCCACATGGCGGTTACAGGCAAAAGATGTCTACGATGAGCTCAAAAAATTG
CTCGTCAATGAGCTTTGTTTGAGGTGAGCTATACAAATAC
TTAAATAGGCAGGGGCACATTACTTTTTTGATGATGGGGGCCTAAATAGCGGGATGTCTGTAACAGCAAGCGATTATCAAAGTTTGAAACTCAAGATAAA
AGAGCTAGAGGAAATAGTAGCAGAGTTGAAAAGCGATAACGAGGCGAAAGCAAAGATAATTGCTGAGCAGGCAAAACTAATAGAAGAGCTAAAAGCTAAA
CTCGCCAAATATGAAAATCCGCATACTCCTTCTTCCGCGCGAAGATATAAGAAGAACTCAGAATCCAAGAACTCATCAAAGAAGCGTGGTGCTCCAAATG
GGCATAGAGGGGCAACCAGGCCAACACCTGAGCCTGACAGGGTGGTGGAAGTTACTACCGATCAATGTGACCTTTGTGGCAGTGCCAATTTAGAGGAGTG
TGGCGTTGAAAAGCAGGTTATCGAGGAACTCCCACCACCGCCCAAGATCGAGGTTATTCAGTTCAATCGTCACAAATATAAGTGCCAGGACTGTGGACAT
GTGTTTATCGCAAAGGACGAGAAATGCCCTCAAAAGGGTAGATTCGGCGTGGATCTACTTGTATATCTGATAATGTTGAAATTTAGCCTTCGGGGCGTTC
TTCGTAGAATCAAGGATTTTACTTTACATCTCAATTCATTTGACATCACTCCTAAGGGCATTCAGGATGCAATTCTCCGTGTGGGAGAAGCATGTAAGAC
TGCTTATTCCGCAAATATCGATAAAGTCAGAGCTGCGACGTGGAATTATATGGACGAGACGGGGATTCGGGTTCTCGGTAAAAACTATTGGCTCTGGACT
TTCAGGACGCCAGAGGATGAAGTGGTGGTAGTAATCAGACCATCGAGGGGCCAGAACGTTTTGCGTGAAATTTTCGGTGGGGATATCAACGGTGCAGGCG
TTGTCGATGGTTGGCGAGCCTATAATATCATTCCCGTTTTACAGCGCTGCTGGGCGCACCTGATAAGAGACGTAGATGCGTTCATTGAACAACCTGGCGG
TAAGGAGCTGTCAGAAGCCATTCATGAAAAATTCAAGGCATTGAAGGGGTTCCTCGGTAAAGACCCGCCGACATCCATGGAAGAACGGAAACAGCAGAAA
AAAGTGTGGGATAGGGAAATGGCAGAGTTAGCGGAGCAATTCAGCAAGTTCACGGAACTGAAGAAGCCGGTAACTTATATCAGAAACGGTCTGGGAAATT
GGTACACATGCCTACTTTATCCTGGTATGGAGCCAACAAACAATCTCAGCGAGCAGGTTATCAGGGAGCATGTGCTCATGCGGAAGATCATAGGTACCTT
TAGATCTGAGGCGGGCGCTGAATATTACCAGTACATCGCTTCGGTCTTCGCCACATGGCGGTTACAGGCAAAAGATGTCTACGATGAGCTCAAAAAATTG
CTCGTCAATGAGCTTTGTTTGAGGTGAGCTATACAAATAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1374 bp | 457 aa | 154 | 1527 | + | No |
Chemistry : DDE
ORF sequence :
MSVTASDYQSLKLKIKELEEIVAELKSDNEAKAKIIAEQAKLIEELKAKLAKYENPHTPSSARRYKKNSESKNSSKKRGAPNGHRGATRPTPEPDRVVEV
TTDQCDLCGSANLEECGVEKQVIEELPPPPKIEVIQFNRHKYKCQDCGHVFIAKDEKCPQKGRFGVDLLVYLIMLKFSLRGVLRRIKDFTLHLNSFDITP
KGIQDAILRVGEACKTAYSANIDKVRAATWNYMDETGIRVLGKNYWLWTFRTPEDEVVVVIRPSRGQNVLREIFGGDINGAGVVDGWRAYNIIPVLQRCW
AHLIRDVDAFIEQPGGKELSEAIHEKFKALKGFLGKDPPTSMEERKQQKKVWDREMAELAEQFSKFTELKKPVTYIRNGLGNWYTCLLYPGMEPTNNLSE
QVIREHVLMRKIIGTFRSEAGAEYYQYIASVFATWRLQAKDVYDELKKLLVNELCLR
TTDQCDLCGSANLEECGVEKQVIEELPPPPKIEVIQFNRHKYKCQDCGHVFIAKDEKCPQKGRFGVDLLVYLIMLKFSLRGVLRRIKDFTLHLNSFDITP
KGIQDAILRVGEACKTAYSANIDKVRAATWNYMDETGIRVLGKNYWLWTFRTPEDEVVVVIRPSRGQNVLREIFGGDINGAGVVDGWRAYNIIPVLQRCW
AHLIRDVDAFIEQPGGKELSEAIHEKFKALKGFLGKDPPTSMEERKQQKKVWDREMAELAEQFSKFTELKKPVTYIRNGLGNWYTCLLYPGMEPTNNLSE
QVIREHVLMRKIIGTFRSEAGAEYYQYIASVFATWRLQAKDVYDELKKLLVNELCLR
Blast result :
Comments
ISArch19 is 53% aa similar to ISArch15.
References
1] Hallam,S.J., Putnam,N., Preston,C.M., Detter,J.C., Rokhsar,D., Richardson,P.M. and DeLong,E.F. (2004) Science 305 (5689), 1457-1462.
2] ISfinder annotation (2008).
2] ISfinder annotation (2008).