ISArch19

  • Family IS66
  • Group ISBst12
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AY714834 ND uncultured archaeon
uncultured archaeon GZfos21B5
DNA section
IS Length : 1540 bp

Ends


IR Length : 14

IRL : GTATTTGTATAGCTACATAACTTTCCCAGCGATATTAATATCCTAGCTGG
IRR : GTATTTGTATAGCTCACCTCAAACAAAGCTCATTGACGAGCAATTTTTTG

Insertion site


Left flankDirect repeatRight flankDR Length
ATTAAATTATCTTTTTTTTATG2

DNA sequence

GTATTTGTATAGCTACATAACTTTCCCAGCGATATTAATATCCTAGCTGGTAATGGAAATAGCCTATTTACTTAATATTATCCTCAGGAGACAAACATAT
TTAAATAGGCAGGGGCACATTACTTTTTTGATGATGGGGGCCTAAATAGCGGGATGTCTGTAACAGCAAGCGATTATCAAAGTTTGAAACTCAAGATAAA
AGAGCTAGAGGAAATAGTAGCAGAGTTGAAAAGCGATAACGAGGCGAAAGCAAAGATAATTGCTGAGCAGGCAAAACTAATAGAAGAGCTAAAAGCTAAA
CTCGCCAAATATGAAAATCCGCATACTCCTTCTTCCGCGCGAAGATATAAGAAGAACTCAGAATCCAAGAACTCATCAAAGAAGCGTGGTGCTCCAAATG
GGCATAGAGGGGCAACCAGGCCAACACCTGAGCCTGACAGGGTGGTGGAAGTTACTACCGATCAATGTGACCTTTGTGGCAGTGCCAATTTAGAGGAGTG
TGGCGTTGAAAAGCAGGTTATCGAGGAACTCCCACCACCGCCCAAGATCGAGGTTATTCAGTTCAATCGTCACAAATATAAGTGCCAGGACTGTGGACAT
GTGTTTATCGCAAAGGACGAGAAATGCCCTCAAAAGGGTAGATTCGGCGTGGATCTACTTGTATATCTGATAATGTTGAAATTTAGCCTTCGGGGCGTTC
TTCGTAGAATCAAGGATTTTACTTTACATCTCAATTCATTTGACATCACTCCTAAGGGCATTCAGGATGCAATTCTCCGTGTGGGAGAAGCATGTAAGAC
TGCTTATTCCGCAAATATCGATAAAGTCAGAGCTGCGACGTGGAATTATATGGACGAGACGGGGATTCGGGTTCTCGGTAAAAACTATTGGCTCTGGACT
TTCAGGACGCCAGAGGATGAAGTGGTGGTAGTAATCAGACCATCGAGGGGCCAGAACGTTTTGCGTGAAATTTTCGGTGGGGATATCAACGGTGCAGGCG
TTGTCGATGGTTGGCGAGCCTATAATATCATTCCCGTTTTACAGCGCTGCTGGGCGCACCTGATAAGAGACGTAGATGCGTTCATTGAACAACCTGGCGG
TAAGGAGCTGTCAGAAGCCATTCATGAAAAATTCAAGGCATTGAAGGGGTTCCTCGGTAAAGACCCGCCGACATCCATGGAAGAACGGAAACAGCAGAAA
AAAGTGTGGGATAGGGAAATGGCAGAGTTAGCGGAGCAATTCAGCAAGTTCACGGAACTGAAGAAGCCGGTAACTTATATCAGAAACGGTCTGGGAAATT
GGTACACATGCCTACTTTATCCTGGTATGGAGCCAACAAACAATCTCAGCGAGCAGGTTATCAGGGAGCATGTGCTCATGCGGAAGATCATAGGTACCTT
TAGATCTGAGGCGGGCGCTGAATATTACCAGTACATCGCTTCGGTCTTCGCCACATGGCGGTTACAGGCAAAAGATGTCTACGATGAGCTCAAAAAATTG
CTCGTCAATGAGCTTTGTTTGAGGTGAGCTATACAAATAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1374 bp457 aa1541527+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSVTASDYQSLKLKIKELEEIVAELKSDNEAKAKIIAEQAKLIEELKAKLAKYENPHTPSSARRYKKNSESKNSSKKRGAPNGHRGATRPTPEPDRVVEV
TTDQCDLCGSANLEECGVEKQVIEELPPPPKIEVIQFNRHKYKCQDCGHVFIAKDEKCPQKGRFGVDLLVYLIMLKFSLRGVLRRIKDFTLHLNSFDITP
KGIQDAILRVGEACKTAYSANIDKVRAATWNYMDETGIRVLGKNYWLWTFRTPEDEVVVVIRPSRGQNVLREIFGGDINGAGVVDGWRAYNIIPVLQRCW
AHLIRDVDAFIEQPGGKELSEAIHEKFKALKGFLGKDPPTSMEERKQQKKVWDREMAELAEQFSKFTELKKPVTYIRNGLGNWYTCLLYPGMEPTNNLSE
QVIREHVLMRKIIGTFRSEAGAEYYQYIASVFATWRLQAKDVYDELKKLLVNELCLR

 

Blast result :
Comments
ISArch19 is 53% aa similar to ISArch15.
References
1] Hallam,S.J., Putnam,N., Preston,C.M., Detter,J.C., Rokhsar,D., Richardson,P.M. and DeLong,E.F. (2004) Science 305 (5689), 1457-1462.

2] ISfinder annotation (2008).