ISPa18
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AJ877225 | ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa plasmid Rms149 |
DNA section
IS Length : 1339 bp
Ends
Left end : GCGCGAGAAACCCCGGCATTCATGCCGGGGAGGGATAGCGCGGCGGCGTTAGCCGCCCCTGTTCTCGCTCCTCCTTTAAACTATTGCTATCTTCACATTA II struct. : No
Right end : CGCATGTTGCCTCAGCAGTTCTCGTTGAATCAGGAAGCCCGGTTAGGCGACTAATCGGAATCCCCGGCATTCATGCCGGGGAGGATGTCAAAAGCATTAG II struct. : No
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CATTGAAATTTCATCA | TTTAT | ATTTGTAGCGA |
DNA sequence
GCGCGAGAAACCCCGGCATTCATGCCGGGGAGGGATAGCGCGGCGGCGTTAGCCGCCCCTGTTCTCGCTCCTCCTTTAAACTATTGCTATCTTCACATTA
AAAGAAATAAAATGTGATACATGACAAAACGCGCCTACAAATACCGCTTTTACCCAACACCTGAACAAGCCCAGTTGCTTGCCCAGACGTTCGGCTGTAC
GCGCTTTGTCTACAATCACATCCTTCGTTGGCGCACCGATGCCTTCTATCAGCGCCAGGAAAAAATCGGCTACATTCAAGCCAATGCCGAACTGACCCGC
ATCAAACGCTCCGGCGAATTTGACTGGCTCAATGACGTGTCCTGTGTCCCGCTCCAGCAGTGCCTTCGGCATCAGCAAGCGGCCTTTAAAAACTTCTTCG
AGGGGCGGGCCAAATACCCCGCTTTCAAGAAGAAGCACCATCGACAATCCATCGAGCTGACTCGTAGCGCCTTTACCTACAAAGGCGGCCAGCTCTACAT
TGCTAAAAGCAAAACCCCACTGGCTATCCGCTGGAGCCGACCGCTCCCGTGCGAACCCAGCACCATTTCCGTTTCCAAAGACCACGCAGGTCGATACTTC
GTTTCCTGCCTGTGTGACTTTGAACCTGAGATGTTGCCTATCACCCCGAACATGATGGGTATCGATCTCGGTCTGAAAGACCTGTTTATCACCAGCCAAG
GCCACAAGGTCAGCAATCCCCGCCACACGGCCAAATATGCCGCCAGGCTTGCCCGCGCCCAGCGTTGCCTGAGTAAAAAGAAACTCGGCTCCGCTAACCG
CGCCAAGGCAAAAGCCAAAGTGGCCCGTATTCACGCCAGGATCTCCGATTGCCGACAGGACAACTTGCACAAGCTGTCCCGCACACTGATTAACGAGAAC
CAAGTTGTGTGCGTTGAGTCTTTGAAGGTGAAGAACATGATCCGCAATCCCAAGCTGGCAAAGGCGATAGCCGATGCCAGTTGGGGTGAGTTCGTGCGCC
AGCTGGCGTACAAAGCCGAATGGGCGGGGCGGTCGCTGGTTGCCATTGACCAGTTTTTCCCGTCCTCAAAACGCTGCTCTGGTTGCGGATATACGCTCTC
CTCTTTGCCGTTAGCGGTGCGCTCGTGGGAGTGCCCTGAATGCGGGTCACACCATGACCGTGACCACAATGCGGCCAAGAATATTCTTGCGGCGGGGCTC
GCCGTGAAAGCCTGTGGAGAGAATGTCAGTCTGGTGTAACGCATGTTGCCTCAGCAGTTCTCGTTGAATCAGGAAGCCCGGTTAGGCGACTAATCGGAAT
CCCCGGCATTCATGCCGGGGAGGATGTCAAAAGCATTAG
AAAGAAATAAAATGTGATACATGACAAAACGCGCCTACAAATACCGCTTTTACCCAACACCTGAACAAGCCCAGTTGCTTGCCCAGACGTTCGGCTGTAC
GCGCTTTGTCTACAATCACATCCTTCGTTGGCGCACCGATGCCTTCTATCAGCGCCAGGAAAAAATCGGCTACATTCAAGCCAATGCCGAACTGACCCGC
ATCAAACGCTCCGGCGAATTTGACTGGCTCAATGACGTGTCCTGTGTCCCGCTCCAGCAGTGCCTTCGGCATCAGCAAGCGGCCTTTAAAAACTTCTTCG
AGGGGCGGGCCAAATACCCCGCTTTCAAGAAGAAGCACCATCGACAATCCATCGAGCTGACTCGTAGCGCCTTTACCTACAAAGGCGGCCAGCTCTACAT
TGCTAAAAGCAAAACCCCACTGGCTATCCGCTGGAGCCGACCGCTCCCGTGCGAACCCAGCACCATTTCCGTTTCCAAAGACCACGCAGGTCGATACTTC
GTTTCCTGCCTGTGTGACTTTGAACCTGAGATGTTGCCTATCACCCCGAACATGATGGGTATCGATCTCGGTCTGAAAGACCTGTTTATCACCAGCCAAG
GCCACAAGGTCAGCAATCCCCGCCACACGGCCAAATATGCCGCCAGGCTTGCCCGCGCCCAGCGTTGCCTGAGTAAAAAGAAACTCGGCTCCGCTAACCG
CGCCAAGGCAAAAGCCAAAGTGGCCCGTATTCACGCCAGGATCTCCGATTGCCGACAGGACAACTTGCACAAGCTGTCCCGCACACTGATTAACGAGAAC
CAAGTTGTGTGCGTTGAGTCTTTGAAGGTGAAGAACATGATCCGCAATCCCAAGCTGGCAAAGGCGATAGCCGATGCCAGTTGGGGTGAGTTCGTGCGCC
AGCTGGCGTACAAAGCCGAATGGGCGGGGCGGTCGCTGGTTGCCATTGACCAGTTTTTCCCGTCCTCAAAACGCTGCTCTGGTTGCGGATATACGCTCTC
CTCTTTGCCGTTAGCGGTGCGCTCGTGGGAGTGCCCTGAATGCGGGTCACACCATGACCGTGACCACAATGCGGCCAAGAATATTCTTGCGGCGGGGCTC
GCCGTGAAAGCCTGTGGAGAGAATGTCAGTCTGGTGTAACGCATGTTGCCTCAGCAGTTCTCGTTGAATCAGGAAGCCCGGTTAGGCGACTAATCGGAAT
CCCCGGCATTCATGCCGGGGAGGATGTCAAAAGCATTAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1119 bp | 372 aa | 121 | 1239 | + | No |
AG : TnpB
ORF sequence :
MTKRAYKYRFYPTPEQAQLLAQTFGCTRFVYNHILRWRTDAFYQRQEKIGYIQANAELTRIKRSGEFDWLNDVSCVPLQQCLRHQQAAFKNFFEGRAKYP
AFKKKHHRQSIELTRSAFTYKGGQLYIAKSKTPLAIRWSRPLPCEPSTISVSKDHAGRYFVSCLCDFEPEMLPITPNMMGIDLGLKDLFITSQGHKVSNP
RHTAKYAARLARAQRCLSKKKLGSANRAKAKAKVARIHARISDCRQDNLHKLSRTLINENQVVCVESLKVKNMIRNPKLAKAIADASWGEFVRQLAYKAE
WAGRSLVAIDQFFPSSKRCSGCGYTLSSLPLAVRSWECPECGSHHDRDHNAAKNILAAGLAVKACGENVSLV
AFKKKHHRQSIELTRSAFTYKGGQLYIAKSKTPLAIRWSRPLPCEPSTISVSKDHAGRYFVSCLCDFEPEMLPITPNMMGIDLGLKDLFITSQGHKVSNP
RHTAKYAARLARAQRCLSKKKLGSANRAKAKAKVARIHARISDCRQDNLHKLSRTLINENQVVCVESLKVKNMIRNPKLAKAIADASWGEFVRQLAYKAE
WAGRSLVAIDQFFPSSKRCSGCGYTLSSLPLAVRSWECPECGSHHDRDHNAAKNILAAGLAVKACGENVSLV
Blast result :
Comments
ISPa18 is 59% aa similar to IS1136A.
Found in Tn1012.
Found in Tn1012.
References
1]Haines A.S., Jones K., Cheung M., Thomas C.M. (2005) J. Bacteriol. 187(14) 4728-4738