ISPa18

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AJ877225 ND Pseudomonas aeruginosa
Pseudomonas aeruginosa plasmid Rms149
DNA section
IS Length : 1339 bp

Ends


Left end : GCGCGAGAAACCCCGGCATTCATGCCGGGGAGGGATAGCGCGGCGGCGTTAGCCGCCCCTGTTCTCGCTCCTCCTTTAAACTATTGCTATCTTCACATTA II struct. : No
Right end : CGCATGTTGCCTCAGCAGTTCTCGTTGAATCAGGAAGCCCGGTTAGGCGACTAATCGGAATCCCCGGCATTCATGCCGGGGAGGATGTCAAAAGCATTAG II struct. : No

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CATTGAAATTTCATCATTTATATTTGTAGCGA

DNA sequence

GCGCGAGAAACCCCGGCATTCATGCCGGGGAGGGATAGCGCGGCGGCGTTAGCCGCCCCTGTTCTCGCTCCTCCTTTAAACTATTGCTATCTTCACATTA
AAAGAAATAAAATGTGATACATGACAAAACGCGCCTACAAATACCGCTTTTACCCAACACCTGAACAAGCCCAGTTGCTTGCCCAGACGTTCGGCTGTAC
GCGCTTTGTCTACAATCACATCCTTCGTTGGCGCACCGATGCCTTCTATCAGCGCCAGGAAAAAATCGGCTACATTCAAGCCAATGCCGAACTGACCCGC
ATCAAACGCTCCGGCGAATTTGACTGGCTCAATGACGTGTCCTGTGTCCCGCTCCAGCAGTGCCTTCGGCATCAGCAAGCGGCCTTTAAAAACTTCTTCG
AGGGGCGGGCCAAATACCCCGCTTTCAAGAAGAAGCACCATCGACAATCCATCGAGCTGACTCGTAGCGCCTTTACCTACAAAGGCGGCCAGCTCTACAT
TGCTAAAAGCAAAACCCCACTGGCTATCCGCTGGAGCCGACCGCTCCCGTGCGAACCCAGCACCATTTCCGTTTCCAAAGACCACGCAGGTCGATACTTC
GTTTCCTGCCTGTGTGACTTTGAACCTGAGATGTTGCCTATCACCCCGAACATGATGGGTATCGATCTCGGTCTGAAAGACCTGTTTATCACCAGCCAAG
GCCACAAGGTCAGCAATCCCCGCCACACGGCCAAATATGCCGCCAGGCTTGCCCGCGCCCAGCGTTGCCTGAGTAAAAAGAAACTCGGCTCCGCTAACCG
CGCCAAGGCAAAAGCCAAAGTGGCCCGTATTCACGCCAGGATCTCCGATTGCCGACAGGACAACTTGCACAAGCTGTCCCGCACACTGATTAACGAGAAC
CAAGTTGTGTGCGTTGAGTCTTTGAAGGTGAAGAACATGATCCGCAATCCCAAGCTGGCAAAGGCGATAGCCGATGCCAGTTGGGGTGAGTTCGTGCGCC
AGCTGGCGTACAAAGCCGAATGGGCGGGGCGGTCGCTGGTTGCCATTGACCAGTTTTTCCCGTCCTCAAAACGCTGCTCTGGTTGCGGATATACGCTCTC
CTCTTTGCCGTTAGCGGTGCGCTCGTGGGAGTGCCCTGAATGCGGGTCACACCATGACCGTGACCACAATGCGGCCAAGAATATTCTTGCGGCGGGGCTC
GCCGTGAAAGCCTGTGGAGAGAATGTCAGTCTGGTGTAACGCATGTTGCCTCAGCAGTTCTCGTTGAATCAGGAAGCCCGGTTAGGCGACTAATCGGAAT
CCCCGGCATTCATGCCGGGGAGGATGTCAAAAGCATTAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1119 bp372 aa1211239+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MTKRAYKYRFYPTPEQAQLLAQTFGCTRFVYNHILRWRTDAFYQRQEKIGYIQANAELTRIKRSGEFDWLNDVSCVPLQQCLRHQQAAFKNFFEGRAKYP
AFKKKHHRQSIELTRSAFTYKGGQLYIAKSKTPLAIRWSRPLPCEPSTISVSKDHAGRYFVSCLCDFEPEMLPITPNMMGIDLGLKDLFITSQGHKVSNP
RHTAKYAARLARAQRCLSKKKLGSANRAKAKAKVARIHARISDCRQDNLHKLSRTLINENQVVCVESLKVKNMIRNPKLAKAIADASWGEFVRQLAYKAE
WAGRSLVAIDQFFPSSKRCSGCGYTLSSLPLAVRSWECPECGSHHDRDHNAAKNILAAGLAVKACGENVSLV

 

Blast result :
Comments
ISPa18 is 59% aa similar to IS1136A.
Found in Tn1012.
References
1]Haines A.S., Jones K., Cheung M., Thomas C.M. (2005) J. Bacteriol. 187(14) 4728-4738