ISC1316

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_002754 ND Sulfolobus solfataricus
Sulfolobus solfataricus P2
DNA section
IS Length : 1317 bp

Ends


Left end : AACAGACGGGGGTTCAAAGGGGGCGGAAAACTTCGCCTCTTTGAGATGGATCCCTTTGTAGAAAAGTTAAAAATAGGAAAATAACGAAATACACATCAAT II struct. : Yes
Right end : TCGGAGCGACCCTTAGTGTGGAGCTCCGCCCTCTACCAGTACTCTGGCAAGGTGGGGCTGTGAAGCAGGAAGCTCCCTCATTTATGAGGGGGTAGCTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
AATGAGAACTTTTATAGGCGATGAGGAATAAAtcac

DNA sequence

AACAGACGGGGGTTCAAAGGGGGCGGAAAACTTCGCCTCTTTGAGATGGATCCCTTTGTAGAAAAGTTAAAAATAGGAAAATAACGAAATACACATCAAT
GCCCACCTTAGGGTTTCGCTTCCGTGCATACACTGACGAACAAACCCTTAGGGCGTTAAAAGCCCAGTTGAAGTTAACATGTGAAATCTACAACACCTTA
AGGTGGGCAGACATATACTTTTACCAAAGGGATGGGAAAGGACTTACGCAGACTGAGTTAAGACAGTTGGCTCTAGATCTGAGAAAACAAGATGATGAGT
ATAAGCAACTCTACTCGCAAGTGGTTCAACAAGTAGCTGACCGTTATTCCGAAGCTAAGAAGAGGTTTTTTGAAGGTTTAGCACGTTTCCCAAAAGAAAA
GAAACCTCATAAATACTACTCCCTTGTCTATACGCAAAGCGGTTGGAAAATACTTCACGTTAGAGAAATAAGAAAAGGCAAGAAGAATAAGAAGAAACTA
ATAACGCTTAAACTATCAAATCTTGGTACGTTCAAGGTAATAGTTCACCGAGACTTTCCCCTTGACAAAGTAAAGAGGGTAGTAGTGAAGCTAACAAGAT
CTGAGAGGATTTACATCACTTTCGTAGTTGATCACGAATTCCCCAAGTTACCTAACACGGGTAAGGTAGTGGCGATAGATGTTGGTGTAGAAAAGTTGTT
AATAACGTCGGATGGTGAGTATTTTCCTAATTTGAGACCTTACGAGAAAGCGTTATGGAAAGTGAAGCATATACACAGAGAACTTTCAAGGAAGAAGTTC
CTCTCTAATAATTGGTTTAAGGCTAAGGTTAAGCTTGCTAGGGCTTATGAGCATTTGAAGAATCTAAGAACGGATCTTTACATGAAGTTGGGCAAGTGGT
TTGCTGAGCATTATGACGTTGTGGTGATGGAAGGTATTCACGCTAAACAGCTTGTGGGTAAGTCCTTGAGGTCTCTGAGGAGGAGATTGAGTGATGTGGG
ATTTGGTGAGTTGAGGGGTGTGCTGAAGTATCAGCTGGAAAAATACGGTAAGAAACTCATCCTAGTTAATCCTGCATACACTTCCAAAACTTGTGCTAGG
TGCGGGTATGTGAAAAATGACTTGTCTCTATCTGATCGTGTTTTCGTTTGTCCCAACTGTGGTTGGATTGCAGATCGTGACTATAATGCTTCTCTTAACA
TCTTACGTGGATCGGGGTCGGAGCGACCCTTAGTGTGGAGCTCCGCCCTCTACCAGTACTCTGGCAAGGTGGGGCTGTGAAGCAGGAAGCTCCCTCATTT
ATGAGGGGGTAGCTCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1182 bp393 aa991280+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MPTLGFRFRAYTDEQTLRALKAQLKLTCEIYNTLRWADIYFYQRDGKGLTQTELRQLALDLRKQDDEYKQLYSQVVQQVADRYSEAKKRFFEGLARFPKE
KKPHKYYSLVYTQSGWKILHVREIRKGKKNKKKLITLKLSNLGTFKVIVHRDFPLDKVKRVVVKLTRSERIYITFVVDHEFPKLPNTGKVVAIDVGVEKL
LITSDGEYFPNLRPYEKALWKVKHIHRELSRKKFLSNNWFKAKVKLARAYEHLKNLRTDLYMKLGKWFAEHYDVVVMEGIHAKQLVGKSLRSLRRRLSDV
GFGELRGVLKYQLEKYGKKLILVNPAYTSKTCARCGYVKNDLSLSDRVFVCPNCGWIADRDYNASLNILRGSGSERPLVWSSALYQYSGKVGL

 

Blast result :
Comments
This IS is present with ten isoform in the genome.
References
1] She,Q., Singh,R.K., Confalonieri,F. et al.(2001)Proc. Natl. Acad. Sci. U.S.A. 98 (14), 7835-7840