ISBeg2
- Family IS1
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ABBZ01002661 | ND | Beggiatoa sp. | Beggiatoa sp. PS |
DNA section
IS Length : 835 bp
Ends
IR Length : 19/20
IRL : GGTGCAATGTGGGTGAGATGATATACTCTATATTTTTCGGTTTAATTATA
IRR : GGTGCAATGTGGGTGATGATAATTCATGTTACCAAAACGGCATTGTAATG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGT | NNNNNNNNNN | 0 |
DNA sequence
GGTGCAATGTGGGTGAGATGATATACTCTATATTTTTCGGTTTAATTATAGAGGAAAAGTTCATGAATTGTCCCCATTGTCAATCAAATGAAATTGTCAA
AAATGGATCACTAACTAATGGCAAACAGAAATATAAATGCAAGGTTTGTGGTAGGCAGTTTGTTATAAATCCACAAAAACAGACCATTTCAGAAGAAACT
AAGGCGTTAGTTGATAAATTGTTATTAGAAAGAATTTCATTGGCAGGTATTGTTCGGGCCACTGGCGTTTCTAAACGGTGGTTGCAAGACTATGTTAATG
AAAAATATGACAACATTCCCAGACGAGTTAAGATCACCAGAAAGAGCAAAGGACGTTTGACTATCGAATGTGATGAACTGTGGTCTTTTGTTTCCAACAA
AAACCATAAGAAATGGGTATGGTTAGCTATTGATAGGAACACGAGAGAAATTGTTTTCGAGGCTAAAGTTTTTTGGAGAAAAACTTTAGCCTCGAAAGGG
GTTTATGTGGGCGATCGCAGTCGTCAATCTTTACCCGCATTGTGGGAGTCGTTACCTGGTGTTTATCGTCAATGTGCAGTAAGTTACACTGATTTTTGGG
AAGCTTATGAAACCGTTTTTCCAAGTACCCGTCATCGCCCAGTCGGCAAGGAAACCGGACAAACCAATCATGTTGAACGTTTAAATTGTACATTAAGACA
ACGTATTTCCCGTTTGGTCAGAAAAACCTTATCTTTTTCTAAAAAACTGTCTAATCATATTGGTGCAATTTGGAACTTTGTTCATCATTACAATGCCGTT
TTGGTAACATGAATTATCATCACCCACATTGCACC
AAATGGATCACTAACTAATGGCAAACAGAAATATAAATGCAAGGTTTGTGGTAGGCAGTTTGTTATAAATCCACAAAAACAGACCATTTCAGAAGAAACT
AAGGCGTTAGTTGATAAATTGTTATTAGAAAGAATTTCATTGGCAGGTATTGTTCGGGCCACTGGCGTTTCTAAACGGTGGTTGCAAGACTATGTTAATG
AAAAATATGACAACATTCCCAGACGAGTTAAGATCACCAGAAAGAGCAAAGGACGTTTGACTATCGAATGTGATGAACTGTGGTCTTTTGTTTCCAACAA
AAACCATAAGAAATGGGTATGGTTAGCTATTGATAGGAACACGAGAGAAATTGTTTTCGAGGCTAAAGTTTTTTGGAGAAAAACTTTAGCCTCGAAAGGG
GTTTATGTGGGCGATCGCAGTCGTCAATCTTTACCCGCATTGTGGGAGTCGTTACCTGGTGTTTATCGTCAATGTGCAGTAAGTTACACTGATTTTTGGG
AAGCTTATGAAACCGTTTTTCCAAGTACCCGTCATCGCCCAGTCGGCAAGGAAACCGGACAAACCAATCATGTTGAACGTTTAAATTGTACATTAAGACA
ACGTATTTCCCGTTTGGTCAGAAAAACCTTATCTTTTTCTAAAAAACTGTCTAATCATATTGGTGCAATTTGGAACTTTGTTCATCATTACAATGCCGTT
TTGGTAACATGAATTATCATCACCCACATTGCACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
750 bp | 249 aa | 63 | 812 | + | No |
Chemistry : DDE
ORF sequence :
MNCPHCQSNEIVKNGSLTNGKQKYKCKVCGRQFVINPQKQTISEETKALVDKLLLERISLAGIVRATGVSKRWLQDYVNEKYDNIPRRVKITRKSKGRLT
IECDELWSFVSNKNHKKWVWLAIDRNTREIVFEAKVFWRKTLASKGVYVGDRSRQSLPALWESLPGVYRQCAVSYTDFWEAYETVFPSTRHRPVGKETGQ
TNHVERLNCTLRQRISRLVRKTLSFSKKLSNHIGAIWNFVHHYNAVLVT
IECDELWSFVSNKNHKKWVWLAIDRNTREIVFEAKVFWRKTLASKGVYVGDRSRQSLPALWESLPGVYRQCAVSYTDFWEAYETVFPSTRHRPVGKETGQ
TNHVERLNCTLRQRISRLVRKTLSFSKKLSNHIGAIWNFVHHYNAVLVT
Blast result :
Comments
ISBeg2 is 75% aa similar to ISLysp1.
References
1] Mussmann,M., Hu,F.Z., Richter,M., de Beer,D., Preisler,A., Jorgensen,B.B., Huntemann,M., Glockner,F.O., Amann,R., Koopman,W.J.H., Janto,B., Hogg,J., Boissy,R., Lasken,R.S., Stoodley,P. and Ehrlich,G.D. (2007) Direct submission GenBank.