ISBeg2

  • Family IS1
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ABBZ01002661 ND Beggiatoa sp.
Beggiatoa sp. PS
DNA section
IS Length : 835 bp

Ends


IR Length : 19/20

IRL : GGTGCAATGTGGGTGAGATGATATACTCTATATTTTTCGGTTTAATTATA
IRR : GGTGCAATGTGGGTGATGATAATTCATGTTACCAAAACGGCATTGTAATG

Insertion site


Left flankDirect repeatRight flankDR Length
AGTNNNNNNNNNN0

DNA sequence

GGTGCAATGTGGGTGAGATGATATACTCTATATTTTTCGGTTTAATTATAGAGGAAAAGTTCATGAATTGTCCCCATTGTCAATCAAATGAAATTGTCAA
AAATGGATCACTAACTAATGGCAAACAGAAATATAAATGCAAGGTTTGTGGTAGGCAGTTTGTTATAAATCCACAAAAACAGACCATTTCAGAAGAAACT
AAGGCGTTAGTTGATAAATTGTTATTAGAAAGAATTTCATTGGCAGGTATTGTTCGGGCCACTGGCGTTTCTAAACGGTGGTTGCAAGACTATGTTAATG
AAAAATATGACAACATTCCCAGACGAGTTAAGATCACCAGAAAGAGCAAAGGACGTTTGACTATCGAATGTGATGAACTGTGGTCTTTTGTTTCCAACAA
AAACCATAAGAAATGGGTATGGTTAGCTATTGATAGGAACACGAGAGAAATTGTTTTCGAGGCTAAAGTTTTTTGGAGAAAAACTTTAGCCTCGAAAGGG
GTTTATGTGGGCGATCGCAGTCGTCAATCTTTACCCGCATTGTGGGAGTCGTTACCTGGTGTTTATCGTCAATGTGCAGTAAGTTACACTGATTTTTGGG
AAGCTTATGAAACCGTTTTTCCAAGTACCCGTCATCGCCCAGTCGGCAAGGAAACCGGACAAACCAATCATGTTGAACGTTTAAATTGTACATTAAGACA
ACGTATTTCCCGTTTGGTCAGAAAAACCTTATCTTTTTCTAAAAAACTGTCTAATCATATTGGTGCAATTTGGAACTTTGTTCATCATTACAATGCCGTT
TTGGTAACATGAATTATCATCACCCACATTGCACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
750 bp249 aa63812+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNCPHCQSNEIVKNGSLTNGKQKYKCKVCGRQFVINPQKQTISEETKALVDKLLLERISLAGIVRATGVSKRWLQDYVNEKYDNIPRRVKITRKSKGRLT
IECDELWSFVSNKNHKKWVWLAIDRNTREIVFEAKVFWRKTLASKGVYVGDRSRQSLPALWESLPGVYRQCAVSYTDFWEAYETVFPSTRHRPVGKETGQ
TNHVERLNCTLRQRISRLVRKTLSFSKKLSNHIGAIWNFVHHYNAVLVT

 

Blast result :
Comments
ISBeg2 is 75% aa similar to ISLysp1.
References
1] Mussmann,M., Hu,F.Z., Richter,M., de Beer,D., Preisler,A., Jorgensen,B.B., Huntemann,M., Glockner,F.O., Amann,R., Koopman,W.J.H., Janto,B., Hogg,J., Boissy,R., Lasken,R.S., Stoodley,P. and Ehrlich,G.D. (2007) Direct submission GenBank.