ISCaa1

  • Family IS1
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ABLI01000006 ND Candidatus Amoebophilus
Candidatus Amoebophilus asiaticus 5a2
DNA section
IS Length : 759 bp

Ends


IR Length : 17/22

IRL : GGGTTTGCTAATTTTAAAATAGCTACTAAATTAGCGAGCAAAAACATATA
IRR : GGGATTGCTAACTAAAATATAGACAAGATAAAATCTTTATATATCAATAA

Insertion site


Left flankDirect repeatRight flankDR Length
TTATATTAAAAATTTGCAAGAAAAGCTGCTA0

DNA sequence

GGGTTTGCTAATTTTAAAATAGCTACTAAATTAGCGAGCAAAAACATATATGGAATGTAAAGGATGTAAATCGAATAAAACCATCAATAATGGTAAAGTA
CGAGGCAAGCAAAGATACAACTGCAAAAGCTGTGGGTTTAACTTTGTTGAAGTAGATGAGCGTAGGGGAAAGAATATAGATAAACAAAGAATGGCTATCC
ACTTATATTTAGAGAACATGGGTTTTAGAGCTATTGGCAGGGTATTGGGAGTGAGTAATCTAGCAGTTTTGAAATGGATAAGGGCAGCTGGAGAATGGAT
ACAAGCTTACCATAATCAAAACAAGCCTAAAAGAAGGCAAGCAGTGGAAGTAATAGAAATGGATGAAATGTGGCATTATGTAGGATCAAAAAAAAAGAAA
CTATGGATATGGTTTGCATTGGAGCGATCAGGGGGAAGTATACTTGACTTTGTCACGGGCAGCCGAGAAGCAAGCACAGGAAAAAGGCTTTGGATTAAAA
TAAAAGATATAGCTTGCCGATCATTTTATGCGACGGACCATTGGCCAGCGTATACACAGTTTATAAATGCTCATAAGCATAAGGTATCCAAAAAGCAGAC
AACACATATAGAATCACATAATGCTAATGTTAGGCATTATTTAGCAAGGTTTCGTAGAAAAACCAAGTGTTATTCAAAATCAGAAAGGCTGGTAGAGTTA
TCTTTATACTTATTGATATATAAAGATTTTATCTTGTCTATATTTTAGTTAGCAATCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
699 bp232 aa50748+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MECKGCKSNKTINNGKVRGKQRYNCKSCGFNFVEVDERRGKNIDKQRMAIHLYLENMGFRAIGRVLGVSNLAVLKWIRAAGEWIQAYHNQNKPKRRQAVE
VIEMDEMWHYVGSKKKKLWIWFALERSGGSILDFVTGSREASTGKRLWIKIKDIACRSFYATDHWPAYTQFINAHKHKVSKKQTTHIESHNANVRHYLAR
FRRKTKCYSKSERLVELSLYLLIYKDFILSIF

 

Blast result :
Comments
ISCaa1 is 61% aa similar to ISMbu3.
References
1] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Larimer,F., Land,M.L., Hauser,L., Horn,M. and Richardson,P. (2008) Direct submission GenBank.