ISCaa1
- Family IS1
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ABLI01000006 | ND | Candidatus Amoebophilus | Candidatus Amoebophilus asiaticus 5a2 |
DNA section
IS Length : 759 bp
Ends
IR Length : 17/22
IRL : GGGTTTGCTAATTTTAAAATAGCTACTAAATTAGCGAGCAAAAACATATA
IRR : GGGATTGCTAACTAAAATATAGACAAGATAAAATCTTTATATATCAATAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTATATTAAAAATTT | GCAAGAAAAGCTGCTA | 0 |
DNA sequence
GGGTTTGCTAATTTTAAAATAGCTACTAAATTAGCGAGCAAAAACATATATGGAATGTAAAGGATGTAAATCGAATAAAACCATCAATAATGGTAAAGTA
CGAGGCAAGCAAAGATACAACTGCAAAAGCTGTGGGTTTAACTTTGTTGAAGTAGATGAGCGTAGGGGAAAGAATATAGATAAACAAAGAATGGCTATCC
ACTTATATTTAGAGAACATGGGTTTTAGAGCTATTGGCAGGGTATTGGGAGTGAGTAATCTAGCAGTTTTGAAATGGATAAGGGCAGCTGGAGAATGGAT
ACAAGCTTACCATAATCAAAACAAGCCTAAAAGAAGGCAAGCAGTGGAAGTAATAGAAATGGATGAAATGTGGCATTATGTAGGATCAAAAAAAAAGAAA
CTATGGATATGGTTTGCATTGGAGCGATCAGGGGGAAGTATACTTGACTTTGTCACGGGCAGCCGAGAAGCAAGCACAGGAAAAAGGCTTTGGATTAAAA
TAAAAGATATAGCTTGCCGATCATTTTATGCGACGGACCATTGGCCAGCGTATACACAGTTTATAAATGCTCATAAGCATAAGGTATCCAAAAAGCAGAC
AACACATATAGAATCACATAATGCTAATGTTAGGCATTATTTAGCAAGGTTTCGTAGAAAAACCAAGTGTTATTCAAAATCAGAAAGGCTGGTAGAGTTA
TCTTTATACTTATTGATATATAAAGATTTTATCTTGTCTATATTTTAGTTAGCAATCCC
CGAGGCAAGCAAAGATACAACTGCAAAAGCTGTGGGTTTAACTTTGTTGAAGTAGATGAGCGTAGGGGAAAGAATATAGATAAACAAAGAATGGCTATCC
ACTTATATTTAGAGAACATGGGTTTTAGAGCTATTGGCAGGGTATTGGGAGTGAGTAATCTAGCAGTTTTGAAATGGATAAGGGCAGCTGGAGAATGGAT
ACAAGCTTACCATAATCAAAACAAGCCTAAAAGAAGGCAAGCAGTGGAAGTAATAGAAATGGATGAAATGTGGCATTATGTAGGATCAAAAAAAAAGAAA
CTATGGATATGGTTTGCATTGGAGCGATCAGGGGGAAGTATACTTGACTTTGTCACGGGCAGCCGAGAAGCAAGCACAGGAAAAAGGCTTTGGATTAAAA
TAAAAGATATAGCTTGCCGATCATTTTATGCGACGGACCATTGGCCAGCGTATACACAGTTTATAAATGCTCATAAGCATAAGGTATCCAAAAAGCAGAC
AACACATATAGAATCACATAATGCTAATGTTAGGCATTATTTAGCAAGGTTTCGTAGAAAAACCAAGTGTTATTCAAAATCAGAAAGGCTGGTAGAGTTA
TCTTTATACTTATTGATATATAAAGATTTTATCTTGTCTATATTTTAGTTAGCAATCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
699 bp | 232 aa | 50 | 748 | + | No |
Chemistry : DDE
ORF sequence :
MECKGCKSNKTINNGKVRGKQRYNCKSCGFNFVEVDERRGKNIDKQRMAIHLYLENMGFRAIGRVLGVSNLAVLKWIRAAGEWIQAYHNQNKPKRRQAVE
VIEMDEMWHYVGSKKKKLWIWFALERSGGSILDFVTGSREASTGKRLWIKIKDIACRSFYATDHWPAYTQFINAHKHKVSKKQTTHIESHNANVRHYLAR
FRRKTKCYSKSERLVELSLYLLIYKDFILSIF
VIEMDEMWHYVGSKKKKLWIWFALERSGGSILDFVTGSREASTGKRLWIKIKDIACRSFYATDHWPAYTQFINAHKHKVSKKQTTHIESHNANVRHYLAR
FRRKTKCYSKSERLVELSLYLLIYKDFILSIF
Blast result :
Comments
ISCaa1 is 61% aa similar to ISMbu3.
References
1] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Larimer,F., Land,M.L., Hauser,L., Horn,M. and Richardson,P. (2008) Direct submission GenBank.