ISGob1
- Family IS66
- Group ISBst12
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ABGO00000000 | ND | Gemmata obscuriglobus | Gemmata obscuriglobus UQM 2246 |
DNA section
IS Length : 1575 bp
Ends
IR Length : 11
IRL : GTAAGCGTTCATGGGGGGCGCTGCCCGCTTTTGCCCGTCGTTTTAGCCCG
IRR : GTAAGCGTTCACAGTTGATGTGGATGTACCTCAACAGCCGGCGAGAGCCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGTTTTCAAG | AACAAGTTGG | 0 |
DNA sequence
GTAAGCGTTCATGGGGGGCGCTGCCCGCTTTTGCCCGTCGTTTTAGCCCGTTTGGATACGCGATTGCCACAAGCGGGCATGTTCGGTAATCGAGCAGACG
CCATGACGCCTGTTCCTCAACCGCCGGAACTGCCCGATAACCTACCACCGGCGGTGGTGGCGTATATTCGCGCCTTGGAGGCCACGATCACCGCTCTGGT
GGCCGAGGTCGCCGAACTCAAGGCCCGACTCAACCCGAACTCCACCAACTCGTCGAAGCCGCCCTCGTCCGATCCTCCGCAGGTGAAACCGGCCCCGCCC
AAGGCCCCTTCGGGGAGGCGTCGGGGCGGGCAACCGGGGCATCCCAGGGCCGAGCGCACGCTCCTGCCACCCGATGAGATCCGGACCCTCAAGCCGTCCG
TGTGCCGGGACTGCTCGCGGCCGCTGGCCGGAGACGATCCGGCTCCGGCCATTCATCAGGTCCACGAGTTGCCCGTTATCAAACCCCACGTGACCGAGTA
CCGGTGCCACCGGCTCCGGTGCCACCACTGCGGCACCACGACCGTCGCCCCGGTGCCGTCGGAGGCGCGCACCGGATACGGACCTCGTGCCCAGGCCGTG
GCCGCCGTGCTCACCGGGTCGTGCCGGCTGGGCAAGCGGGGCACGAGCCAACTGTTCGGCGACCTGTTCGGACGGCCCCTGTCCCCGGCGATGGTGTGCA
AGCTCCAGCACACCACGGCCCAGGCGCGAGCCCCGGTGGCCGAGGCGGCCCTGGTGTACACCCGCGCCCATCCGGCCAACGTGGACGAGACGGGCTGGAC
CCAAGGGCGCCAGCGGTCCTGGCTGTGGGTGGCCGTGACGACCTTGGTGGTCGCATTCTTGATCCGCCGGACCCGGGGCCGGAGCGCGTTCGACGACCTC
CGAGGCGGCTCGGCCCAGGTTCACACCACGGACCGATACCCGGTATATACGCACCTCCCGAAGCACCGGCGCCAGGTGTGTTGGGCGCACCTGCGGCGGG
ACTTCCAGGCCATGATCGACCGAGCCAACCCGGGTTCCGGGCTCGGCGCCGACCTGCTGGCCGGTTCGGACGAGTTGTTCGAGCATTGGTACCGGGTGCG
GGACGGCACGTTGGCCCGGTCGACGTGCGCTCGCGTATACGCCCGCGGGGTGGGGGCCCGGGTGCGCGCGCACCTGGGGCGAGGTGTCGAGTGCGGGTGC
CCCAAGACGGCCGCCGTGTGCCGCGAGTTGCTGGCGCTCGAGCCGTCGTTGTGGACGTTCGTCCGGGTGCCCGGGGTCGAGCCCACCAACAACGCGGCCG
AGCGCGAGGTGCGGCACGCGGTGTGTTGGCGGAAGACCAGCTTCGGCACCGACAGTGAGGCCGGGAGTCGGTTCGTGGAGCGAATCCTCACGGTCATCGC
GTCGTGCCGCCGCCAGGGCCGCAACGTGCTCGTGTTCCTCACCGACGCCGTCACCGCACACCGCACCGGGGCAACCCCACCAACCCTGATCCCGGTCCCG
GCACAACAACCATCGGTGAGGAGCCCGGCTCTCGCCGGCTGTTGAGGTACATCCACATCAACTGTGAACGCTTAC
CCATGACGCCTGTTCCTCAACCGCCGGAACTGCCCGATAACCTACCACCGGCGGTGGTGGCGTATATTCGCGCCTTGGAGGCCACGATCACCGCTCTGGT
GGCCGAGGTCGCCGAACTCAAGGCCCGACTCAACCCGAACTCCACCAACTCGTCGAAGCCGCCCTCGTCCGATCCTCCGCAGGTGAAACCGGCCCCGCCC
AAGGCCCCTTCGGGGAGGCGTCGGGGCGGGCAACCGGGGCATCCCAGGGCCGAGCGCACGCTCCTGCCACCCGATGAGATCCGGACCCTCAAGCCGTCCG
TGTGCCGGGACTGCTCGCGGCCGCTGGCCGGAGACGATCCGGCTCCGGCCATTCATCAGGTCCACGAGTTGCCCGTTATCAAACCCCACGTGACCGAGTA
CCGGTGCCACCGGCTCCGGTGCCACCACTGCGGCACCACGACCGTCGCCCCGGTGCCGTCGGAGGCGCGCACCGGATACGGACCTCGTGCCCAGGCCGTG
GCCGCCGTGCTCACCGGGTCGTGCCGGCTGGGCAAGCGGGGCACGAGCCAACTGTTCGGCGACCTGTTCGGACGGCCCCTGTCCCCGGCGATGGTGTGCA
AGCTCCAGCACACCACGGCCCAGGCGCGAGCCCCGGTGGCCGAGGCGGCCCTGGTGTACACCCGCGCCCATCCGGCCAACGTGGACGAGACGGGCTGGAC
CCAAGGGCGCCAGCGGTCCTGGCTGTGGGTGGCCGTGACGACCTTGGTGGTCGCATTCTTGATCCGCCGGACCCGGGGCCGGAGCGCGTTCGACGACCTC
CGAGGCGGCTCGGCCCAGGTTCACACCACGGACCGATACCCGGTATATACGCACCTCCCGAAGCACCGGCGCCAGGTGTGTTGGGCGCACCTGCGGCGGG
ACTTCCAGGCCATGATCGACCGAGCCAACCCGGGTTCCGGGCTCGGCGCCGACCTGCTGGCCGGTTCGGACGAGTTGTTCGAGCATTGGTACCGGGTGCG
GGACGGCACGTTGGCCCGGTCGACGTGCGCTCGCGTATACGCCCGCGGGGTGGGGGCCCGGGTGCGCGCGCACCTGGGGCGAGGTGTCGAGTGCGGGTGC
CCCAAGACGGCCGCCGTGTGCCGCGAGTTGCTGGCGCTCGAGCCGTCGTTGTGGACGTTCGTCCGGGTGCCCGGGGTCGAGCCCACCAACAACGCGGCCG
AGCGCGAGGTGCGGCACGCGGTGTGTTGGCGGAAGACCAGCTTCGGCACCGACAGTGAGGCCGGGAGTCGGTTCGTGGAGCGAATCCTCACGGTCATCGC
GTCGTGCCGCCGCCAGGGCCGCAACGTGCTCGTGTTCCTCACCGACGCCGTCACCGCACACCGCACCGGGGCAACCCCACCAACCCTGATCCCGGTCCCG
GCACAACAACCATCGGTGAGGAGCCCGGCTCTCGCCGGCTGTTGAGGTACATCCACATCAACTGTGAACGCTTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1443 bp | 480 aa | 103 | 1545 | + | No |
Chemistry : DDE
ORF sequence :
MTPVPQPPELPDNLPPAVVAYIRALEATITALVAEVAELKARLNPNSTNSSKPPSSDPPQVKPAPPKAPSGRRRGGQPGHPRAERTLLPPDEIRTLKPSV
CRDCSRPLAGDDPAPAIHQVHELPVIKPHVTEYRCHRLRCHHCGTTTVAPVPSEARTGYGPRAQAVAAVLTGSCRLGKRGTSQLFGDLFGRPLSPAMVCK
LQHTTAQARAPVAEAALVYTRAHPANVDETGWTQGRQRSWLWVAVTTLVVAFLIRRTRGRSAFDDLRGGSAQVHTTDRYPVYTHLPKHRRQVCWAHLRRD
FQAMIDRANPGSGLGADLLAGSDELFEHWYRVRDGTLARSTCARVYARGVGARVRAHLGRGVECGCPKTAAVCRELLALEPSLWTFVRVPGVEPTNNAAE
REVRHAVCWRKTSFGTDSEAGSRFVERILTVIASCRRQGRNVLVFLTDAVTAHRTGATPPTLIPVPAQQPSVRSPALAGC
CRDCSRPLAGDDPAPAIHQVHELPVIKPHVTEYRCHRLRCHHCGTTTVAPVPSEARTGYGPRAQAVAAVLTGSCRLGKRGTSQLFGDLFGRPLSPAMVCK
LQHTTAQARAPVAEAALVYTRAHPANVDETGWTQGRQRSWLWVAVTTLVVAFLIRRTRGRSAFDDLRGGSAQVHTTDRYPVYTHLPKHRRQVCWAHLRRD
FQAMIDRANPGSGLGADLLAGSDELFEHWYRVRDGTLARSTCARVYARGVGARVRAHLGRGVECGCPKTAAVCRELLALEPSLWTFVRVPGVEPTNNAAE
REVRHAVCWRKTSFGTDSEAGSRFVERILTVIASCRRQGRNVLVFLTDAVTAHRTGATPPTLIPVPAQQPSVRSPALAGC
Blast result :
Comments
ISGob1 is 56% aa similar to ISStau2.
References
1] ISfinder annotation (2008).
2] Ward,N. (2007) Direct Submission GenBank.
2] Ward,N. (2007) Direct Submission GenBank.