ISGob1

  • Family IS66
  • Group ISBst12
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ABGO00000000 ND Gemmata obscuriglobus
Gemmata obscuriglobus UQM 2246
DNA section
IS Length : 1575 bp

Ends


IR Length : 11

IRL : GTAAGCGTTCATGGGGGGCGCTGCCCGCTTTTGCCCGTCGTTTTAGCCCG
IRR : GTAAGCGTTCACAGTTGATGTGGATGTACCTCAACAGCCGGCGAGAGCCG

Insertion site


Left flankDirect repeatRight flankDR Length
CGTTTTCAAGAACAAGTTGG0

DNA sequence

GTAAGCGTTCATGGGGGGCGCTGCCCGCTTTTGCCCGTCGTTTTAGCCCGTTTGGATACGCGATTGCCACAAGCGGGCATGTTCGGTAATCGAGCAGACG
CCATGACGCCTGTTCCTCAACCGCCGGAACTGCCCGATAACCTACCACCGGCGGTGGTGGCGTATATTCGCGCCTTGGAGGCCACGATCACCGCTCTGGT
GGCCGAGGTCGCCGAACTCAAGGCCCGACTCAACCCGAACTCCACCAACTCGTCGAAGCCGCCCTCGTCCGATCCTCCGCAGGTGAAACCGGCCCCGCCC
AAGGCCCCTTCGGGGAGGCGTCGGGGCGGGCAACCGGGGCATCCCAGGGCCGAGCGCACGCTCCTGCCACCCGATGAGATCCGGACCCTCAAGCCGTCCG
TGTGCCGGGACTGCTCGCGGCCGCTGGCCGGAGACGATCCGGCTCCGGCCATTCATCAGGTCCACGAGTTGCCCGTTATCAAACCCCACGTGACCGAGTA
CCGGTGCCACCGGCTCCGGTGCCACCACTGCGGCACCACGACCGTCGCCCCGGTGCCGTCGGAGGCGCGCACCGGATACGGACCTCGTGCCCAGGCCGTG
GCCGCCGTGCTCACCGGGTCGTGCCGGCTGGGCAAGCGGGGCACGAGCCAACTGTTCGGCGACCTGTTCGGACGGCCCCTGTCCCCGGCGATGGTGTGCA
AGCTCCAGCACACCACGGCCCAGGCGCGAGCCCCGGTGGCCGAGGCGGCCCTGGTGTACACCCGCGCCCATCCGGCCAACGTGGACGAGACGGGCTGGAC
CCAAGGGCGCCAGCGGTCCTGGCTGTGGGTGGCCGTGACGACCTTGGTGGTCGCATTCTTGATCCGCCGGACCCGGGGCCGGAGCGCGTTCGACGACCTC
CGAGGCGGCTCGGCCCAGGTTCACACCACGGACCGATACCCGGTATATACGCACCTCCCGAAGCACCGGCGCCAGGTGTGTTGGGCGCACCTGCGGCGGG
ACTTCCAGGCCATGATCGACCGAGCCAACCCGGGTTCCGGGCTCGGCGCCGACCTGCTGGCCGGTTCGGACGAGTTGTTCGAGCATTGGTACCGGGTGCG
GGACGGCACGTTGGCCCGGTCGACGTGCGCTCGCGTATACGCCCGCGGGGTGGGGGCCCGGGTGCGCGCGCACCTGGGGCGAGGTGTCGAGTGCGGGTGC
CCCAAGACGGCCGCCGTGTGCCGCGAGTTGCTGGCGCTCGAGCCGTCGTTGTGGACGTTCGTCCGGGTGCCCGGGGTCGAGCCCACCAACAACGCGGCCG
AGCGCGAGGTGCGGCACGCGGTGTGTTGGCGGAAGACCAGCTTCGGCACCGACAGTGAGGCCGGGAGTCGGTTCGTGGAGCGAATCCTCACGGTCATCGC
GTCGTGCCGCCGCCAGGGCCGCAACGTGCTCGTGTTCCTCACCGACGCCGTCACCGCACACCGCACCGGGGCAACCCCACCAACCCTGATCCCGGTCCCG
GCACAACAACCATCGGTGAGGAGCCCGGCTCTCGCCGGCTGTTGAGGTACATCCACATCAACTGTGAACGCTTAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1443 bp480 aa1031545+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTPVPQPPELPDNLPPAVVAYIRALEATITALVAEVAELKARLNPNSTNSSKPPSSDPPQVKPAPPKAPSGRRRGGQPGHPRAERTLLPPDEIRTLKPSV
CRDCSRPLAGDDPAPAIHQVHELPVIKPHVTEYRCHRLRCHHCGTTTVAPVPSEARTGYGPRAQAVAAVLTGSCRLGKRGTSQLFGDLFGRPLSPAMVCK
LQHTTAQARAPVAEAALVYTRAHPANVDETGWTQGRQRSWLWVAVTTLVVAFLIRRTRGRSAFDDLRGGSAQVHTTDRYPVYTHLPKHRRQVCWAHLRRD
FQAMIDRANPGSGLGADLLAGSDELFEHWYRVRDGTLARSTCARVYARGVGARVRAHLGRGVECGCPKTAAVCRELLALEPSLWTFVRVPGVEPTNNAAE
REVRHAVCWRKTSFGTDSEAGSRFVERILTVIASCRRQGRNVLVFLTDAVTAHRTGATPPTLIPVPAQQPSVRSPALAGC

 

Blast result :
Comments
ISGob1 is 56% aa similar to ISStau2.
References
1] ISfinder annotation (2008).
2] Ward,N. (2007) Direct Submission GenBank.