ISVva1

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ABDE01000092 ND Victivallis vadensis
Victivallis vadensis ATCC BAA-548
DNA section
IS Length : 1741 bp

Ends


IR Length : 15/16

IRL : CCTAAATCCGTGAAATAACAGGTAAAATTAAAGTTAAAACAGAGGCAAAC
IRR : CCTGAATCCGTGAAATTTTGTCCATGTGTTTTTCATGCGGATTCAAACGT

Insertion site


Left flankDirect repeatRight flankDR Length
CATGAATAAATTTTTGTTTAGCTTC5

DNA sequence

CCTAAATCCGTGAAATAACAGGTAAAATTAAAGTTAAAACAGAGGCAAACCTCTTGGGTTGCAGTATATTACATGAGAATACAACATAACGAATGGACTC
AACCCGATAGGAGAAACGATGGCAACGCGGTTTAAAATTACGCAAAGCAGGGAAGATCTGATAGCCACTGGCGGCATCGCCATGGTTGGAGCCTTGCTGA
ATGACAATCGTGGCTTGGCAAGTGTGGACAAGCTGACAACGGATCGTATCAAAAAAGGCTGGATATCCAACAGTGGAATAATCAAGTCCGTGGTCGGTCT
GTTCACGCTTGGGCGCAGTGATTTTGCCGATATTTCCATGTTTCGAGATGAGTTATCATTTCGGCTTGCGTTAGAACTGGAACGTGTTCCGTCTGAAGAG
ACCTTGCGTCAACGTTTGGATTTGATCGCGAAACTCAATTCCCAGCAGACGCTGTTGGATTACGCCATGCGTGATCTGCTGCGCAAGGTTGAATCGTTCG
GAACCGTGAAAATCGGGAAATACAAACTGATTCCACTGGACATCGACGTTGCTGCGCTGTTGAATCCCGACTGCAAAAAAGAAGGAATTGCCCGAACCTA
CCATAAAATTGACGGATATGCGCCGATTTTTGCCTATCTGGGAAGTGAGGGCTATATGCTTGCCAACGAATTGCGGATCGGCAGTCAGCACAGCGAGAAT
GGAGCGGTAGAATTTCTACGGCGCTGTCTGGAACAGGTAAAAGCACTGAAAATTGATCTCCGGCAAATCGTGGTTCGTGTCGATTCCGGTCACGACGACC
AGAAATTCATCAAAGTATTGGCTGAATACGGTGTGAAATTCATCATAAAACGCAATCTCCGCGGGGAACCTCGTGAGCGTTATCTGGAACTCGGGAAACA
ATATGGAGCAAAACAGCCGTCTCGCGAAGGGAAAAATGTCTGGCATTATTCATGGGGAAATATTCCTATCGACAAGTCGGATGAGCTGTTTGATGCGGAA
GAAGAATCCATGCGGGGAACCATGACGATGGTGGTTGCCGCGACCGAACGCCAGACCCATGCAAAGACGGGGGAAGTCTTTCTGTTCCCTGAAATCGAGA
TTGATTCGTGGTGGACAAATATTGACTGCACGGAAGAAGAATGTATCGCCGGATATCACGATCACGGAACCAGTGAACAGTTCCATAGTGAGCTGAAGAC
CGATATGAACATTGAAAAACTGCCGAGTGGAAAATTTGCCACAAATGCCTTGATTTTAAACATTGCGGCATTGGCATTCAATTGTTTGCGGATCATGGGG
CAGCGTTTTCTGAACAAACCGCAGTTGCTTCACCGGGAATATAAGGTGGCGCGCCGCCGGTTGCGCTCCGTGATGCAGGACTTGATCTATATCGCCTGCA
AAGTTGTGAAACACGCTGGATATATTTGGCTCTCATTCGGTCGCGGTAATCCGCATTACCGGATTTTTAAGGATTTGTATGCGCGATGTTGAACCATAAC
GCTATCAAAACAGAATTTTGGAAGGAGGTGTTTTGAAACATCATTGGAGGCGTATGCCTCAAAATCGGGATTTTTGAATCAGTTTCAACTTTTTTTGTAA
AATCGGTCATGTATGTCGATGAATAACGAAAGTTGACGGAAGCCGAGACAAAAATCAGAACAGAAAACGCCGGAAAATCTGGCAAAAAACAACGTTTGAA
TCCGCATGAAAAACACATGGACAAAATTTCACGGATTCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1374 bp457 aa1191492+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MATRFKITQSREDLIATGGIAMVGALLNDNRGLASVDKLTTDRIKKGWISNSGIIKSVVGLFTLGRSDFADISMFRDELSFRLALELERVPSEETLRQRL
DLIAKLNSQQTLLDYAMRDLLRKVESFGTVKIGKYKLIPLDIDVAALLNPDCKKEGIARTYHKIDGYAPIFAYLGSEGYMLANELRIGSQHSENGAVEFL
RRCLEQVKALKIDLRQIVVRVDSGHDDQKFIKVLAEYGVKFIIKRNLRGEPRERYLELGKQYGAKQPSREGKNVWHYSWGNIPIDKSDELFDAEEESMRG
TMTMVVAATERQTHAKTGEVFLFPEIEIDSWWTNIDCTEEECIAGYHDHGTSEQFHSELKTDMNIEKLPSGKFATNALILNIAALAFNCLRIMGQRFLNK
PQLLHREYKVARRRLRSVMQDLIYIACKVVKHAGYIWLSFGRGNPHYRIFKDLYARC

 

Blast result :
Comments
ISVva1 is 40% aa similar to ISLsp3.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S., Smidt,H. and Richardson,P. (2007) Direct Submission GenBank.