ISVva1
- Family IS1380
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ABDE01000092 | ND | Victivallis vadensis | Victivallis vadensis ATCC BAA-548 |
DNA section
IS Length : 1741 bp
Ends
IR Length : 15/16
IRL : CCTAAATCCGTGAAATAACAGGTAAAATTAAAGTTAAAACAGAGGCAAAC
IRR : CCTGAATCCGTGAAATTTTGTCCATGTGTTTTTCATGCGGATTCAAACGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CATGAATAAA | TTTTT | GTTTAGCTTC | 5 |
DNA sequence
CCTAAATCCGTGAAATAACAGGTAAAATTAAAGTTAAAACAGAGGCAAACCTCTTGGGTTGCAGTATATTACATGAGAATACAACATAACGAATGGACTC
AACCCGATAGGAGAAACGATGGCAACGCGGTTTAAAATTACGCAAAGCAGGGAAGATCTGATAGCCACTGGCGGCATCGCCATGGTTGGAGCCTTGCTGA
ATGACAATCGTGGCTTGGCAAGTGTGGACAAGCTGACAACGGATCGTATCAAAAAAGGCTGGATATCCAACAGTGGAATAATCAAGTCCGTGGTCGGTCT
GTTCACGCTTGGGCGCAGTGATTTTGCCGATATTTCCATGTTTCGAGATGAGTTATCATTTCGGCTTGCGTTAGAACTGGAACGTGTTCCGTCTGAAGAG
ACCTTGCGTCAACGTTTGGATTTGATCGCGAAACTCAATTCCCAGCAGACGCTGTTGGATTACGCCATGCGTGATCTGCTGCGCAAGGTTGAATCGTTCG
GAACCGTGAAAATCGGGAAATACAAACTGATTCCACTGGACATCGACGTTGCTGCGCTGTTGAATCCCGACTGCAAAAAAGAAGGAATTGCCCGAACCTA
CCATAAAATTGACGGATATGCGCCGATTTTTGCCTATCTGGGAAGTGAGGGCTATATGCTTGCCAACGAATTGCGGATCGGCAGTCAGCACAGCGAGAAT
GGAGCGGTAGAATTTCTACGGCGCTGTCTGGAACAGGTAAAAGCACTGAAAATTGATCTCCGGCAAATCGTGGTTCGTGTCGATTCCGGTCACGACGACC
AGAAATTCATCAAAGTATTGGCTGAATACGGTGTGAAATTCATCATAAAACGCAATCTCCGCGGGGAACCTCGTGAGCGTTATCTGGAACTCGGGAAACA
ATATGGAGCAAAACAGCCGTCTCGCGAAGGGAAAAATGTCTGGCATTATTCATGGGGAAATATTCCTATCGACAAGTCGGATGAGCTGTTTGATGCGGAA
GAAGAATCCATGCGGGGAACCATGACGATGGTGGTTGCCGCGACCGAACGCCAGACCCATGCAAAGACGGGGGAAGTCTTTCTGTTCCCTGAAATCGAGA
TTGATTCGTGGTGGACAAATATTGACTGCACGGAAGAAGAATGTATCGCCGGATATCACGATCACGGAACCAGTGAACAGTTCCATAGTGAGCTGAAGAC
CGATATGAACATTGAAAAACTGCCGAGTGGAAAATTTGCCACAAATGCCTTGATTTTAAACATTGCGGCATTGGCATTCAATTGTTTGCGGATCATGGGG
CAGCGTTTTCTGAACAAACCGCAGTTGCTTCACCGGGAATATAAGGTGGCGCGCCGCCGGTTGCGCTCCGTGATGCAGGACTTGATCTATATCGCCTGCA
AAGTTGTGAAACACGCTGGATATATTTGGCTCTCATTCGGTCGCGGTAATCCGCATTACCGGATTTTTAAGGATTTGTATGCGCGATGTTGAACCATAAC
GCTATCAAAACAGAATTTTGGAAGGAGGTGTTTTGAAACATCATTGGAGGCGTATGCCTCAAAATCGGGATTTTTGAATCAGTTTCAACTTTTTTTGTAA
AATCGGTCATGTATGTCGATGAATAACGAAAGTTGACGGAAGCCGAGACAAAAATCAGAACAGAAAACGCCGGAAAATCTGGCAAAAAACAACGTTTGAA
TCCGCATGAAAAACACATGGACAAAATTTCACGGATTCAGG
AACCCGATAGGAGAAACGATGGCAACGCGGTTTAAAATTACGCAAAGCAGGGAAGATCTGATAGCCACTGGCGGCATCGCCATGGTTGGAGCCTTGCTGA
ATGACAATCGTGGCTTGGCAAGTGTGGACAAGCTGACAACGGATCGTATCAAAAAAGGCTGGATATCCAACAGTGGAATAATCAAGTCCGTGGTCGGTCT
GTTCACGCTTGGGCGCAGTGATTTTGCCGATATTTCCATGTTTCGAGATGAGTTATCATTTCGGCTTGCGTTAGAACTGGAACGTGTTCCGTCTGAAGAG
ACCTTGCGTCAACGTTTGGATTTGATCGCGAAACTCAATTCCCAGCAGACGCTGTTGGATTACGCCATGCGTGATCTGCTGCGCAAGGTTGAATCGTTCG
GAACCGTGAAAATCGGGAAATACAAACTGATTCCACTGGACATCGACGTTGCTGCGCTGTTGAATCCCGACTGCAAAAAAGAAGGAATTGCCCGAACCTA
CCATAAAATTGACGGATATGCGCCGATTTTTGCCTATCTGGGAAGTGAGGGCTATATGCTTGCCAACGAATTGCGGATCGGCAGTCAGCACAGCGAGAAT
GGAGCGGTAGAATTTCTACGGCGCTGTCTGGAACAGGTAAAAGCACTGAAAATTGATCTCCGGCAAATCGTGGTTCGTGTCGATTCCGGTCACGACGACC
AGAAATTCATCAAAGTATTGGCTGAATACGGTGTGAAATTCATCATAAAACGCAATCTCCGCGGGGAACCTCGTGAGCGTTATCTGGAACTCGGGAAACA
ATATGGAGCAAAACAGCCGTCTCGCGAAGGGAAAAATGTCTGGCATTATTCATGGGGAAATATTCCTATCGACAAGTCGGATGAGCTGTTTGATGCGGAA
GAAGAATCCATGCGGGGAACCATGACGATGGTGGTTGCCGCGACCGAACGCCAGACCCATGCAAAGACGGGGGAAGTCTTTCTGTTCCCTGAAATCGAGA
TTGATTCGTGGTGGACAAATATTGACTGCACGGAAGAAGAATGTATCGCCGGATATCACGATCACGGAACCAGTGAACAGTTCCATAGTGAGCTGAAGAC
CGATATGAACATTGAAAAACTGCCGAGTGGAAAATTTGCCACAAATGCCTTGATTTTAAACATTGCGGCATTGGCATTCAATTGTTTGCGGATCATGGGG
CAGCGTTTTCTGAACAAACCGCAGTTGCTTCACCGGGAATATAAGGTGGCGCGCCGCCGGTTGCGCTCCGTGATGCAGGACTTGATCTATATCGCCTGCA
AAGTTGTGAAACACGCTGGATATATTTGGCTCTCATTCGGTCGCGGTAATCCGCATTACCGGATTTTTAAGGATTTGTATGCGCGATGTTGAACCATAAC
GCTATCAAAACAGAATTTTGGAAGGAGGTGTTTTGAAACATCATTGGAGGCGTATGCCTCAAAATCGGGATTTTTGAATCAGTTTCAACTTTTTTTGTAA
AATCGGTCATGTATGTCGATGAATAACGAAAGTTGACGGAAGCCGAGACAAAAATCAGAACAGAAAACGCCGGAAAATCTGGCAAAAAACAACGTTTGAA
TCCGCATGAAAAACACATGGACAAAATTTCACGGATTCAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1374 bp | 457 aa | 119 | 1492 | + | No |
Chemistry : DDE
ORF sequence :
MATRFKITQSREDLIATGGIAMVGALLNDNRGLASVDKLTTDRIKKGWISNSGIIKSVVGLFTLGRSDFADISMFRDELSFRLALELERVPSEETLRQRL
DLIAKLNSQQTLLDYAMRDLLRKVESFGTVKIGKYKLIPLDIDVAALLNPDCKKEGIARTYHKIDGYAPIFAYLGSEGYMLANELRIGSQHSENGAVEFL
RRCLEQVKALKIDLRQIVVRVDSGHDDQKFIKVLAEYGVKFIIKRNLRGEPRERYLELGKQYGAKQPSREGKNVWHYSWGNIPIDKSDELFDAEEESMRG
TMTMVVAATERQTHAKTGEVFLFPEIEIDSWWTNIDCTEEECIAGYHDHGTSEQFHSELKTDMNIEKLPSGKFATNALILNIAALAFNCLRIMGQRFLNK
PQLLHREYKVARRRLRSVMQDLIYIACKVVKHAGYIWLSFGRGNPHYRIFKDLYARC
DLIAKLNSQQTLLDYAMRDLLRKVESFGTVKIGKYKLIPLDIDVAALLNPDCKKEGIARTYHKIDGYAPIFAYLGSEGYMLANELRIGSQHSENGAVEFL
RRCLEQVKALKIDLRQIVVRVDSGHDDQKFIKVLAEYGVKFIIKRNLRGEPRERYLELGKQYGAKQPSREGKNVWHYSWGNIPIDKSDELFDAEEESMRG
TMTMVVAATERQTHAKTGEVFLFPEIEIDSWWTNIDCTEEECIAGYHDHGTSEQFHSELKTDMNIEKLPSGKFATNALILNIAALAFNCLRIMGQRFLNK
PQLLHREYKVARRRLRSVMQDLIYIACKVVKHAGYIWLSFGRGNPHYRIFKDLYARC
Blast result :
Comments
ISVva1 is 40% aa similar to ISLsp3.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S., Smidt,H. and Richardson,P. (2007) Direct Submission GenBank.