ISRhru2

  • Family IS66
  • Group ISBst12
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007643 ND Rhodospirillum rubrum
Rhodospirillum rubrum ATCC 11170
DNA section
IS Length : 1443 bp

Ends


IR Length : 13

IRL : GTAATTGCTCACGTAGCTGGCAAAATTGGTTGCGCGGGGGCTCCAAACAT
IRR : GTAATTGCTCACGGGGGTGGCGTCCTGGCTCAGGCGATGGCGAATTGGCC

Insertion site


Left flankDirect repeatRight flankDR Length
AGCTGCCGCGCAAGCGCTTACG2

DNA sequence

GTAATTGCTCACGTAGCTGGCAAAATTGGTTGCGCGGGGGCTCCAAACATGAATCAACGTATGGATGAAACTGTTGCTGCGCTATCTCCTGAGTAACGCC
GAGAAAGACGCCCTGCTGACGGAGCAGGCGGCGCTGATCGAGCGCATGGCGGCACGGATTGCCGAGCTTGAGGCGTCAGTCGGCAAGCCGAAGAAGACCT
CGTCCAATTCGCATATCCCACCGTCAAAAGATGGCCCGGGCCGAGAAAACCGGAAGCCCCAGCCCCCTCGGAAGCAGCGGCCATCGCGTCCTGGCGTGTC
GCGCCCGTTGACCGAAACCCCGGACAAGACCGAGCGCCGGATGGCTGATATCTGCCTGCATTGCGGAAAAACCACGCCCGAGGCGGGGCAGCGTTGCCGC
CATCGCTATGACCATATCGACCTTCCGCCGATCCGCCCGGTGGTGACGCGGGTCGAACTGTTCGGCGGCCGGTGCGGCTGCGGCAAGCGCTATCGGGCCG
AGGCTCCCGCCGGCATGGAGCCGGGGACGCCATTCGGGCCGGGCATCCGCTCGCTGCTGCTCTATCTCCATCACAGCCACCCTGTCGGCTTCGAGCGACT
GTCGCGAATGCTCCAGGAATTGTTCGGCTTGGCCATCTCAGAAGGCGCCATCGCCAATGCCTTTCGGCGGAGCCAAGCCGGTTTGGACCAAGCCCGGGCG
GCGATCAAAGCCAAGCTGCTGACCGCCCGAATCATCGCCTCGGACGAAACCACCACCCGCGTCGATGGTGTGACCCAGTGGCAATGGGTGTTCATCTCGG
ATCAGGCGGTTCTGCATGAAATCGCCCCGCGCCGGGCCAAGAGCGTCGCCGAAACCGTGCTGAACGGTCACCGGCCCGAAATCTGGGTTTCGGATCGCTA
TGCGGGGCAACAGGATCTGGCCCGCGTCCATCAAGTCTGTCTCGCCCATGTTTTGCGCGACGTGCAATACGCCATCGACAGCGGCGATACGGTGGTCGCG
CCAAAAATCCGCGACCACCTGCGATGGGCCATCCGGGTCGGCAAGCGACGATCCGACTTGAAGAACAGCACGCTGGCCGCCTATGCGGCGAAGGCCGAAC
GACGCCTCGACGCCCTGGTCGGCCACCCCACCGCTCACCCCGCCGGACGGCTTTTGCAGCGGCAAATCAAGGCGTGGCGCGCCAAGTTCTTCGTCTTCCT
GACCGACCGAGGCGTGCCGCCCACCAACAACGTCTCCGAACGGGAAATCAGGCCCTCCGTCGTCTTCCGCAAGGTCACCAACGGATTCCGCTCCGACTGG
GGCGCCCAAATCCATGCCGGATACCGATCCGTCACCGGCACCGCCCGCCTGAAAGGCCAGACGGCCTTCGCCGCTGTTCGCGCCCTCGTCGATGGCCAAT
TCGCCATCGCCTGAGCCAGGACGCCACCCCCGTGAGCAATTAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1350 bp449 aa651414+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKLLLRYLLSNAEKDALLTEQAALIERMAARIAELEASVGKPKKTSSNSHIPPSKDGPGRENRKPQPPRKQRPSRPGVSRPLTETPDKTERRMADICLHC
GKTTPEAGQRCRHRYDHIDLPPIRPVVTRVELFGGRCGCGKRYRAEAPAGMEPGTPFGPGIRSLLLYLHHSHPVGFERLSRMLQELFGLAISEGAIANAF
RRSQAGLDQARAAIKAKLLTARIIASDETTTRVDGVTQWQWVFISDQAVLHEIAPRRAKSVAETVLNGHRPEIWVSDRYAGQQDLARVHQVCLAHVLRDV
QYAIDSGDTVVAPKIRDHLRWAIRVGKRRSDLKNSTLAAYAAKAERRLDALVGHPTAHPAGRLLQRQIKAWRAKFFVFLTDRGVPPTNNVSEREIRPSVV
FRKVTNGFRSDWGAQIHAGYRSVTGTARLKGQTAFAAVRALVDGQFAIA

 

Blast result :
Comments
ISRhru2 is 45% aa similar to ISGka4.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Munk,A.C., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Mavrommatis,K. and Richardson,P. (2005) Direct Submission GenBank.

2] ISfinder annotation (2008).