ISRhru2
- Family IS66
- Group ISBst12
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007643 | ND | Rhodospirillum rubrum | Rhodospirillum rubrum ATCC 11170 |
DNA section
IS Length : 1443 bp
Ends
IR Length : 13
IRL : GTAATTGCTCACGTAGCTGGCAAAATTGGTTGCGCGGGGGCTCCAAACAT
IRR : GTAATTGCTCACGGGGGTGGCGTCCTGGCTCAGGCGATGGCGAATTGGCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGCTGCCGCG | CA | AGCGCTTACG | 2 |
DNA sequence
GTAATTGCTCACGTAGCTGGCAAAATTGGTTGCGCGGGGGCTCCAAACATGAATCAACGTATGGATGAAACTGTTGCTGCGCTATCTCCTGAGTAACGCC
GAGAAAGACGCCCTGCTGACGGAGCAGGCGGCGCTGATCGAGCGCATGGCGGCACGGATTGCCGAGCTTGAGGCGTCAGTCGGCAAGCCGAAGAAGACCT
CGTCCAATTCGCATATCCCACCGTCAAAAGATGGCCCGGGCCGAGAAAACCGGAAGCCCCAGCCCCCTCGGAAGCAGCGGCCATCGCGTCCTGGCGTGTC
GCGCCCGTTGACCGAAACCCCGGACAAGACCGAGCGCCGGATGGCTGATATCTGCCTGCATTGCGGAAAAACCACGCCCGAGGCGGGGCAGCGTTGCCGC
CATCGCTATGACCATATCGACCTTCCGCCGATCCGCCCGGTGGTGACGCGGGTCGAACTGTTCGGCGGCCGGTGCGGCTGCGGCAAGCGCTATCGGGCCG
AGGCTCCCGCCGGCATGGAGCCGGGGACGCCATTCGGGCCGGGCATCCGCTCGCTGCTGCTCTATCTCCATCACAGCCACCCTGTCGGCTTCGAGCGACT
GTCGCGAATGCTCCAGGAATTGTTCGGCTTGGCCATCTCAGAAGGCGCCATCGCCAATGCCTTTCGGCGGAGCCAAGCCGGTTTGGACCAAGCCCGGGCG
GCGATCAAAGCCAAGCTGCTGACCGCCCGAATCATCGCCTCGGACGAAACCACCACCCGCGTCGATGGTGTGACCCAGTGGCAATGGGTGTTCATCTCGG
ATCAGGCGGTTCTGCATGAAATCGCCCCGCGCCGGGCCAAGAGCGTCGCCGAAACCGTGCTGAACGGTCACCGGCCCGAAATCTGGGTTTCGGATCGCTA
TGCGGGGCAACAGGATCTGGCCCGCGTCCATCAAGTCTGTCTCGCCCATGTTTTGCGCGACGTGCAATACGCCATCGACAGCGGCGATACGGTGGTCGCG
CCAAAAATCCGCGACCACCTGCGATGGGCCATCCGGGTCGGCAAGCGACGATCCGACTTGAAGAACAGCACGCTGGCCGCCTATGCGGCGAAGGCCGAAC
GACGCCTCGACGCCCTGGTCGGCCACCCCACCGCTCACCCCGCCGGACGGCTTTTGCAGCGGCAAATCAAGGCGTGGCGCGCCAAGTTCTTCGTCTTCCT
GACCGACCGAGGCGTGCCGCCCACCAACAACGTCTCCGAACGGGAAATCAGGCCCTCCGTCGTCTTCCGCAAGGTCACCAACGGATTCCGCTCCGACTGG
GGCGCCCAAATCCATGCCGGATACCGATCCGTCACCGGCACCGCCCGCCTGAAAGGCCAGACGGCCTTCGCCGCTGTTCGCGCCCTCGTCGATGGCCAAT
TCGCCATCGCCTGAGCCAGGACGCCACCCCCGTGAGCAATTAC
GAGAAAGACGCCCTGCTGACGGAGCAGGCGGCGCTGATCGAGCGCATGGCGGCACGGATTGCCGAGCTTGAGGCGTCAGTCGGCAAGCCGAAGAAGACCT
CGTCCAATTCGCATATCCCACCGTCAAAAGATGGCCCGGGCCGAGAAAACCGGAAGCCCCAGCCCCCTCGGAAGCAGCGGCCATCGCGTCCTGGCGTGTC
GCGCCCGTTGACCGAAACCCCGGACAAGACCGAGCGCCGGATGGCTGATATCTGCCTGCATTGCGGAAAAACCACGCCCGAGGCGGGGCAGCGTTGCCGC
CATCGCTATGACCATATCGACCTTCCGCCGATCCGCCCGGTGGTGACGCGGGTCGAACTGTTCGGCGGCCGGTGCGGCTGCGGCAAGCGCTATCGGGCCG
AGGCTCCCGCCGGCATGGAGCCGGGGACGCCATTCGGGCCGGGCATCCGCTCGCTGCTGCTCTATCTCCATCACAGCCACCCTGTCGGCTTCGAGCGACT
GTCGCGAATGCTCCAGGAATTGTTCGGCTTGGCCATCTCAGAAGGCGCCATCGCCAATGCCTTTCGGCGGAGCCAAGCCGGTTTGGACCAAGCCCGGGCG
GCGATCAAAGCCAAGCTGCTGACCGCCCGAATCATCGCCTCGGACGAAACCACCACCCGCGTCGATGGTGTGACCCAGTGGCAATGGGTGTTCATCTCGG
ATCAGGCGGTTCTGCATGAAATCGCCCCGCGCCGGGCCAAGAGCGTCGCCGAAACCGTGCTGAACGGTCACCGGCCCGAAATCTGGGTTTCGGATCGCTA
TGCGGGGCAACAGGATCTGGCCCGCGTCCATCAAGTCTGTCTCGCCCATGTTTTGCGCGACGTGCAATACGCCATCGACAGCGGCGATACGGTGGTCGCG
CCAAAAATCCGCGACCACCTGCGATGGGCCATCCGGGTCGGCAAGCGACGATCCGACTTGAAGAACAGCACGCTGGCCGCCTATGCGGCGAAGGCCGAAC
GACGCCTCGACGCCCTGGTCGGCCACCCCACCGCTCACCCCGCCGGACGGCTTTTGCAGCGGCAAATCAAGGCGTGGCGCGCCAAGTTCTTCGTCTTCCT
GACCGACCGAGGCGTGCCGCCCACCAACAACGTCTCCGAACGGGAAATCAGGCCCTCCGTCGTCTTCCGCAAGGTCACCAACGGATTCCGCTCCGACTGG
GGCGCCCAAATCCATGCCGGATACCGATCCGTCACCGGCACCGCCCGCCTGAAAGGCCAGACGGCCTTCGCCGCTGTTCGCGCCCTCGTCGATGGCCAAT
TCGCCATCGCCTGAGCCAGGACGCCACCCCCGTGAGCAATTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1350 bp | 449 aa | 65 | 1414 | + | No |
Chemistry : DDE
ORF sequence :
MKLLLRYLLSNAEKDALLTEQAALIERMAARIAELEASVGKPKKTSSNSHIPPSKDGPGRENRKPQPPRKQRPSRPGVSRPLTETPDKTERRMADICLHC
GKTTPEAGQRCRHRYDHIDLPPIRPVVTRVELFGGRCGCGKRYRAEAPAGMEPGTPFGPGIRSLLLYLHHSHPVGFERLSRMLQELFGLAISEGAIANAF
RRSQAGLDQARAAIKAKLLTARIIASDETTTRVDGVTQWQWVFISDQAVLHEIAPRRAKSVAETVLNGHRPEIWVSDRYAGQQDLARVHQVCLAHVLRDV
QYAIDSGDTVVAPKIRDHLRWAIRVGKRRSDLKNSTLAAYAAKAERRLDALVGHPTAHPAGRLLQRQIKAWRAKFFVFLTDRGVPPTNNVSEREIRPSVV
FRKVTNGFRSDWGAQIHAGYRSVTGTARLKGQTAFAAVRALVDGQFAIA
GKTTPEAGQRCRHRYDHIDLPPIRPVVTRVELFGGRCGCGKRYRAEAPAGMEPGTPFGPGIRSLLLYLHHSHPVGFERLSRMLQELFGLAISEGAIANAF
RRSQAGLDQARAAIKAKLLTARIIASDETTTRVDGVTQWQWVFISDQAVLHEIAPRRAKSVAETVLNGHRPEIWVSDRYAGQQDLARVHQVCLAHVLRDV
QYAIDSGDTVVAPKIRDHLRWAIRVGKRRSDLKNSTLAAYAAKAERRLDALVGHPTAHPAGRLLQRQIKAWRAKFFVFLTDRGVPPTNNVSEREIRPSVV
FRKVTNGFRSDWGAQIHAGYRSVTGTARLKGQTAFAAVRALVDGQFAIA
Blast result :
Comments
ISRhru2 is 45% aa similar to ISGka4.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Munk,A.C., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Mavrommatis,K. and Richardson,P. (2005) Direct Submission GenBank.
2] ISfinder annotation (2008).
2] ISfinder annotation (2008).