ISCwa4
- Family IS66
- Group ISBst12
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AADV00000000 | ND | Crocosphaera watsonii | Crocosphaera watsonii WH 8501 |
DNA section
IS Length : 1870 bp
Ends
IR Length : 24/28
IRL : GTAATTGCTCACCGCAATAAAGAATCTGTCTTGACAACATAAAGGTAAAA
IRR : GTAACTGCTCACCGCAACAAAAAAGTCTTATTGAAAAGCACTACAAACAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CAGCCAAAAC | GAAACAGTTA | 0 | |
CGCATTTTTA | ATTTTATTAA | 0 | |
AAAGTTATAC | GTCATTTTTG | 0 | |
GATATTCTCG | ATCATATTCA | 0 | |
ATGATTTCAC | GAAACAGTTA | 0 | |
GGGATGAAGC | GCGAAAAATT | 0 | |
CCATCAAAAT | TGCAAAAGAT | 0 |
DNA sequence
GTAATTGCTCACCGCAATAAAGAATCTGTCTTGACAACATAAAGGTAAAATCGGGGATTTTTATGTATAGTGGGGGTTATGACCACAAATGCTACCATTG
ATTCAAAGCTAGTTAGAGCTATCGCCGATGAACAGTTGGCGAACAATGTCTTCATGATTGAGTGGCTAGTCAAGGCACAACAACAGTTATCTCTTCAACA
AAGACTGATTGACCAGCAACAACAACAAATCTCTACACAACAGCAAGAAATTGAAAAATTGAAAGAAGAGAGAGATAAGCTAAAAAACCGTAACTCAAAA
AACAGTTCAGTCCCCCCATCATCAGACCAACTAAAAAAGCCTTCTGACAAAAAGAAACGCAAAAAAGGATTTAAACGCGGACCAAAATATGACCACCCAG
GGAAGACCCGTAATGGTTTTGGTCAGCCCGATAAGATAGTCCCTTTAGAACTAGAAAACTGTCCTGTTTGTGGGGGTTCAGTGGAACGAGATGAAGTAGT
TCCCGAAAAAGTCCAGCAAGTGGCTGAAGTAGTAGACCAACCCATAGAAATCAGGGAATATCGTCGCGGATTCTATAAATGTCCTAGTTGTGGATGGTCA
GATTACAGTCCTGTTCCATTGGGAGTTAAAGAAGGATTCAGTTATGGGGCGCGATTAAGTAGCATCGTGGGCTGGCTTGGCTATGGGGGTAATCTTACAT
GGCGTAAACAGGAACATTTTATAGAGTATGTCTTTGGCATTCCCATTTCTCAAGGGAGCCTTGCCAAAATGCACAAATGGTTTCAAGAAAGTTTAGAACC
CTTGACCCAACAGTGGTTAAAGTACATCCAGCAGCCAGGAATCCGATGTGTTGACGAAACCAGTTATTGCATCGATGGCATCAAGTATTGGGTTTGGGTA
GCCACATCAAATGAGGTCTGTGTGTTGATGTTGGCTCCCACTAGAAGCTCCGCAGAAGTCGAGAAATTGTTAGGAGCAGATTTTAAGGGCATCCTCACCA
GTGACTGCTATAGTGCCTACTTTAGACAAAGTGCGATGGCCAAACAGAAATGTCTGGCACATTTAGAACGAGAGTTAGAGTCCCTTAAAACCAGTCGTTT
TCAAGCGAATCGAGAATTTGCTGCCGATGTACAGCAAGTTTTAGCAACCGCCCGTATCCATTATCGTCATTATCATGGTCGAAATTTAACCCTTGAAGAC
TTAGGCTCCAAAAGAACAGAAGTCGAGAACTCACTGCAAAAGATTTTTAAAGCAACTCCCAAAAAAGGATGGCCTTATGATGCACAAAGATTGATTAACC
GTCTCAAACGTCATTGGGAAGAGTGGTTCACCTTTCTAACTTATCCTGAAGTCAAACCAGATAATAATGATGCTGAGAGAGCTTTACGTCCCATTGTCAT
TCACCGCAAAGTAAGTGGGGGAGCAAGAAGCGACTGGGGTGCAGAGTTAGTCACCCAAATGTTCAGTTTTTTAGAGACCATGAGATTACAGGGGCAAAAT
GCCATTGTCCAATTATGCGAATTATTTTCATTAGCTGGTCGGAGTCCCCCAGGATTAGAGATGTAAAAGGCTCCGGAGCCGATGGGGGATAGATTTTTCT
TGATCGCCCTATCTCTCTGCACAAAAATAAACAGGGTTAGCGGATAATCTCCGCTAACAAAAAACTATCTTACTATTCTTTTTTTCTCATATTGTTGTTT
TTATTTGAGGTTTTTAAAAGACTTGATTCTGGGAATGTTAGTCATTAAAATAGCCGTAATAAATTAGCTTAAATTTTACGCTAAATCACAGGGCTTATAT
TTTTGTTGACTCAACTGATGTTGTTTGTAGTGCTTTTCAATAAGACTTTTTTGTTGCGGTGAGCAGTTAC
ATTCAAAGCTAGTTAGAGCTATCGCCGATGAACAGTTGGCGAACAATGTCTTCATGATTGAGTGGCTAGTCAAGGCACAACAACAGTTATCTCTTCAACA
AAGACTGATTGACCAGCAACAACAACAAATCTCTACACAACAGCAAGAAATTGAAAAATTGAAAGAAGAGAGAGATAAGCTAAAAAACCGTAACTCAAAA
AACAGTTCAGTCCCCCCATCATCAGACCAACTAAAAAAGCCTTCTGACAAAAAGAAACGCAAAAAAGGATTTAAACGCGGACCAAAATATGACCACCCAG
GGAAGACCCGTAATGGTTTTGGTCAGCCCGATAAGATAGTCCCTTTAGAACTAGAAAACTGTCCTGTTTGTGGGGGTTCAGTGGAACGAGATGAAGTAGT
TCCCGAAAAAGTCCAGCAAGTGGCTGAAGTAGTAGACCAACCCATAGAAATCAGGGAATATCGTCGCGGATTCTATAAATGTCCTAGTTGTGGATGGTCA
GATTACAGTCCTGTTCCATTGGGAGTTAAAGAAGGATTCAGTTATGGGGCGCGATTAAGTAGCATCGTGGGCTGGCTTGGCTATGGGGGTAATCTTACAT
GGCGTAAACAGGAACATTTTATAGAGTATGTCTTTGGCATTCCCATTTCTCAAGGGAGCCTTGCCAAAATGCACAAATGGTTTCAAGAAAGTTTAGAACC
CTTGACCCAACAGTGGTTAAAGTACATCCAGCAGCCAGGAATCCGATGTGTTGACGAAACCAGTTATTGCATCGATGGCATCAAGTATTGGGTTTGGGTA
GCCACATCAAATGAGGTCTGTGTGTTGATGTTGGCTCCCACTAGAAGCTCCGCAGAAGTCGAGAAATTGTTAGGAGCAGATTTTAAGGGCATCCTCACCA
GTGACTGCTATAGTGCCTACTTTAGACAAAGTGCGATGGCCAAACAGAAATGTCTGGCACATTTAGAACGAGAGTTAGAGTCCCTTAAAACCAGTCGTTT
TCAAGCGAATCGAGAATTTGCTGCCGATGTACAGCAAGTTTTAGCAACCGCCCGTATCCATTATCGTCATTATCATGGTCGAAATTTAACCCTTGAAGAC
TTAGGCTCCAAAAGAACAGAAGTCGAGAACTCACTGCAAAAGATTTTTAAAGCAACTCCCAAAAAAGGATGGCCTTATGATGCACAAAGATTGATTAACC
GTCTCAAACGTCATTGGGAAGAGTGGTTCACCTTTCTAACTTATCCTGAAGTCAAACCAGATAATAATGATGCTGAGAGAGCTTTACGTCCCATTGTCAT
TCACCGCAAAGTAAGTGGGGGAGCAAGAAGCGACTGGGGTGCAGAGTTAGTCACCCAAATGTTCAGTTTTTTAGAGACCATGAGATTACAGGGGCAAAAT
GCCATTGTCCAATTATGCGAATTATTTTCATTAGCTGGTCGGAGTCCCCCAGGATTAGAGATGTAAAAGGCTCCGGAGCCGATGGGGGATAGATTTTTCT
TGATCGCCCTATCTCTCTGCACAAAAATAAACAGGGTTAGCGGATAATCTCCGCTAACAAAAAACTATCTTACTATTCTTTTTTTCTCATATTGTTGTTT
TTATTTGAGGTTTTTAAAAGACTTGATTCTGGGAATGTTAGTCATTAAAATAGCCGTAATAAATTAGCTTAAATTTTACGCTAAATCACAGGGCTTATAT
TTTTGTTGACTCAACTGATGTTGTTTGTAGTGCTTTTCAATAAGACTTTTTTGTTGCGGTGAGCAGTTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1497 bp | 498 aa | 70 | 1566 | + | No |
Chemistry : DDE
ORF sequence :
VGVMTTNATIDSKLVRAIADEQLANNVFMIEWLVKAQQQLSLQQRLIDQQQQQISTQQQEIEKLKEERDKLKNRNSKNSSVPPSSDQLKKPSDKKKRKKG
FKRGPKYDHPGKTRNGFGQPDKIVPLELENCPVCGGSVERDEVVPEKVQQVAEVVDQPIEIREYRRGFYKCPSCGWSDYSPVPLGVKEGFSYGARLSSIV
GWLGYGGNLTWRKQEHFIEYVFGIPISQGSLAKMHKWFQESLEPLTQQWLKYIQQPGIRCVDETSYCIDGIKYWVWVATSNEVCVLMLAPTRSSAEVEKL
LGADFKGILTSDCYSAYFRQSAMAKQKCLAHLERELESLKTSRFQANREFAADVQQVLATARIHYRHYHGRNLTLEDLGSKRTEVENSLQKIFKATPKKG
WPYDAQRLINRLKRHWEEWFTFLTYPEVKPDNNDAERALRPIVIHRKVSGGARSDWGAELVTQMFSFLETMRLQGQNAIVQLCELFSLAGRSPPGLEM
FKRGPKYDHPGKTRNGFGQPDKIVPLELENCPVCGGSVERDEVVPEKVQQVAEVVDQPIEIREYRRGFYKCPSCGWSDYSPVPLGVKEGFSYGARLSSIV
GWLGYGGNLTWRKQEHFIEYVFGIPISQGSLAKMHKWFQESLEPLTQQWLKYIQQPGIRCVDETSYCIDGIKYWVWVATSNEVCVLMLAPTRSSAEVEKL
LGADFKGILTSDCYSAYFRQSAMAKQKCLAHLERELESLKTSRFQANREFAADVQQVLATARIHYRHYHGRNLTLEDLGSKRTEVENSLQKIFKATPKKG
WPYDAQRLINRLKRHWEEWFTFLTYPEVKPDNNDAERALRPIVIHRKVSGGARSDWGAELVTQMFSFLETMRLQGQNAIVQLCELFSLAGRSPPGLEM
Blast result :
Comments
ISCwa4 is 53% aa similar to ISCysp3.
References
1] ISfinder annotation (2008).
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T., Hammon,N., Israni,S., Pitluck,S. and Richardson,P. (2005) Direct Submission GenBank.
3] DOE Joint Genome Institute. (2004) Direct Submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T., Hammon,N., Israni,S., Pitluck,S. and Richardson,P. (2005) Direct Submission GenBank.
3] DOE Joint Genome Institute. (2004) Direct Submission GenBank.