ISCwa4

  • Family IS66
  • Group ISBst12
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AADV00000000 ND Crocosphaera watsonii
Crocosphaera watsonii WH 8501
DNA section
IS Length : 1870 bp

Ends


IR Length : 24/28

IRL : GTAATTGCTCACCGCAATAAAGAATCTGTCTTGACAACATAAAGGTAAAA
IRR : GTAACTGCTCACCGCAACAAAAAAGTCTTATTGAAAAGCACTACAAACAA

Insertion site


Left flankDirect repeatRight flankDR Length
CAGCCAAAACGAAACAGTTA0
CGCATTTTTAATTTTATTAA0
AAAGTTATACGTCATTTTTG0
GATATTCTCGATCATATTCA0
ATGATTTCACGAAACAGTTA0
GGGATGAAGCGCGAAAAATT0
CCATCAAAATTGCAAAAGAT0

DNA sequence

GTAATTGCTCACCGCAATAAAGAATCTGTCTTGACAACATAAAGGTAAAATCGGGGATTTTTATGTATAGTGGGGGTTATGACCACAAATGCTACCATTG
ATTCAAAGCTAGTTAGAGCTATCGCCGATGAACAGTTGGCGAACAATGTCTTCATGATTGAGTGGCTAGTCAAGGCACAACAACAGTTATCTCTTCAACA
AAGACTGATTGACCAGCAACAACAACAAATCTCTACACAACAGCAAGAAATTGAAAAATTGAAAGAAGAGAGAGATAAGCTAAAAAACCGTAACTCAAAA
AACAGTTCAGTCCCCCCATCATCAGACCAACTAAAAAAGCCTTCTGACAAAAAGAAACGCAAAAAAGGATTTAAACGCGGACCAAAATATGACCACCCAG
GGAAGACCCGTAATGGTTTTGGTCAGCCCGATAAGATAGTCCCTTTAGAACTAGAAAACTGTCCTGTTTGTGGGGGTTCAGTGGAACGAGATGAAGTAGT
TCCCGAAAAAGTCCAGCAAGTGGCTGAAGTAGTAGACCAACCCATAGAAATCAGGGAATATCGTCGCGGATTCTATAAATGTCCTAGTTGTGGATGGTCA
GATTACAGTCCTGTTCCATTGGGAGTTAAAGAAGGATTCAGTTATGGGGCGCGATTAAGTAGCATCGTGGGCTGGCTTGGCTATGGGGGTAATCTTACAT
GGCGTAAACAGGAACATTTTATAGAGTATGTCTTTGGCATTCCCATTTCTCAAGGGAGCCTTGCCAAAATGCACAAATGGTTTCAAGAAAGTTTAGAACC
CTTGACCCAACAGTGGTTAAAGTACATCCAGCAGCCAGGAATCCGATGTGTTGACGAAACCAGTTATTGCATCGATGGCATCAAGTATTGGGTTTGGGTA
GCCACATCAAATGAGGTCTGTGTGTTGATGTTGGCTCCCACTAGAAGCTCCGCAGAAGTCGAGAAATTGTTAGGAGCAGATTTTAAGGGCATCCTCACCA
GTGACTGCTATAGTGCCTACTTTAGACAAAGTGCGATGGCCAAACAGAAATGTCTGGCACATTTAGAACGAGAGTTAGAGTCCCTTAAAACCAGTCGTTT
TCAAGCGAATCGAGAATTTGCTGCCGATGTACAGCAAGTTTTAGCAACCGCCCGTATCCATTATCGTCATTATCATGGTCGAAATTTAACCCTTGAAGAC
TTAGGCTCCAAAAGAACAGAAGTCGAGAACTCACTGCAAAAGATTTTTAAAGCAACTCCCAAAAAAGGATGGCCTTATGATGCACAAAGATTGATTAACC
GTCTCAAACGTCATTGGGAAGAGTGGTTCACCTTTCTAACTTATCCTGAAGTCAAACCAGATAATAATGATGCTGAGAGAGCTTTACGTCCCATTGTCAT
TCACCGCAAAGTAAGTGGGGGAGCAAGAAGCGACTGGGGTGCAGAGTTAGTCACCCAAATGTTCAGTTTTTTAGAGACCATGAGATTACAGGGGCAAAAT
GCCATTGTCCAATTATGCGAATTATTTTCATTAGCTGGTCGGAGTCCCCCAGGATTAGAGATGTAAAAGGCTCCGGAGCCGATGGGGGATAGATTTTTCT
TGATCGCCCTATCTCTCTGCACAAAAATAAACAGGGTTAGCGGATAATCTCCGCTAACAAAAAACTATCTTACTATTCTTTTTTTCTCATATTGTTGTTT
TTATTTGAGGTTTTTAAAAGACTTGATTCTGGGAATGTTAGTCATTAAAATAGCCGTAATAAATTAGCTTAAATTTTACGCTAAATCACAGGGCTTATAT
TTTTGTTGACTCAACTGATGTTGTTTGTAGTGCTTTTCAATAAGACTTTTTTGTTGCGGTGAGCAGTTAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1497 bp498 aa701566+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

VGVMTTNATIDSKLVRAIADEQLANNVFMIEWLVKAQQQLSLQQRLIDQQQQQISTQQQEIEKLKEERDKLKNRNSKNSSVPPSSDQLKKPSDKKKRKKG
FKRGPKYDHPGKTRNGFGQPDKIVPLELENCPVCGGSVERDEVVPEKVQQVAEVVDQPIEIREYRRGFYKCPSCGWSDYSPVPLGVKEGFSYGARLSSIV
GWLGYGGNLTWRKQEHFIEYVFGIPISQGSLAKMHKWFQESLEPLTQQWLKYIQQPGIRCVDETSYCIDGIKYWVWVATSNEVCVLMLAPTRSSAEVEKL
LGADFKGILTSDCYSAYFRQSAMAKQKCLAHLERELESLKTSRFQANREFAADVQQVLATARIHYRHYHGRNLTLEDLGSKRTEVENSLQKIFKATPKKG
WPYDAQRLINRLKRHWEEWFTFLTYPEVKPDNNDAERALRPIVIHRKVSGGARSDWGAELVTQMFSFLETMRLQGQNAIVQLCELFSLAGRSPPGLEM

 

Blast result :
Comments
ISCwa4 is 53% aa similar to ISCysp3.
References
1] ISfinder annotation (2008).
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T., Hammon,N., Israni,S., Pitluck,S. and Richardson,P. (2005) Direct Submission GenBank.
3] DOE Joint Genome Institute. (2004) Direct Submission GenBank.