ISArch17

  • Family IS1
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AY714827 ND Uncultured archaeon
Uncultured archaeon GZfos18F2
DNA section
IS Length : 1183 bp

Ends


IR Length : 24

IRL : GGCACTGGTTCAGTTGAATAGGTACTGCATCTAGCTTAAAATATATAACA
IRR : GGCACTGGTTCAGTTGAATAGGTAATACAAAGTATCTTAAATTAAGATAG

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GGCACTGGTTCAGTTGAATAGGTACTGCATCTAGCTTAAAATATATAACAAAGTTCTGAACACAGACAACTAAAGAATGTACGATAATCTACCCCAACTA
ACATAAAAAGGAGTAGATTATGTCACCGTTTCCATTTCCATGTAAATGCCCCAAATGTTCGTCCGAAAATGTCCGATTTGATTATAAATACGATACTATT
TCAAACGGTAGTAGGCAAATGCTTCTTTGCCGAGGCTGTGGGGCTTCATTCTCAGAAACAAAAAACACCTTCCTGCAAAATATCAGGACGCCTGTCAGTA
CGATCTGGAAAGTCTTAAAGTCCCGAACTGAGGGGACGTCTCTAAACGCTACTTGCAGGGTTTTTGATATTGCTAAAAACACCCTGCTTGCTTGGGAACG
AAAATTTTCCAGTTTGTATCATACCCTACTCATCTATTCAATGACGCATACATTTATCCAATTGGTAATCGAAGGCGATGAATTTTATACGAAAGTAGAT
AAAAATGTTCCTGCTGAACAATCATCCGGTTGGACTATCGTCCTTATGGATAGAGCCAGTCGATTCATTTGGGAACTGAGTTGCGGTAAAAAAGACAGAT
CGCTTTTTGAAAATGCAATTGAGACGCTGGCAGAACTTGTCGTTCAAACGAAAGATATAACGCTTCTGACAGATGGAGAACGCCGATATGGAAAAATTCT
CTTTGAAATATGCCATGAACTTTTGCTAACCGGCAAACCTGGTCGCCCCAAAAAAACATTGAAAAAGGGAGTTACTGTCAGGGTAAAAAACAAAGGCTCT
CAAACACATAAGAAAGGACGTAAGAAACCAAAATACCAGACAACATGTCCGCAACACCCTGAAACCTCGAATAATATTTCAGATAAGGAAACACACGCCA
ACCACGTTGAAGCCAACAATAGCGCAATGCGCCGGAAATGTTCAGCATACAGAAGAAAAACAAACACATATGCCAAATCAGAAACCGGCCTTCAACGTAT
TTTGAACGTCTATTGGGTTATCCATAATTTCTTAAGAGTTCATTTTACAACCAAGGAGATACCTGCAGTCAGTTTAGGGCTGATAGAAAGTGGGCTTGTC
CCAGAAGAACTTTTCAGCATCCAATGTATGTAACTATCTTAATTTAAGATACTTTGTATTACCTATTCAACTGAACCAGTGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1014 bp337 aa1201133+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSPFPFPCKCPKCSSENVRFDYKYDTISNGSRQMLLCRGCGASFSETKNTFLQNIRTPVSTIWKVLKSRTEGTSLNATCRVFDIAKNTLLAWERKFSSLY
HTLLIYSMTHTFIQLVIEGDEFYTKVDKNVPAEQSSGWTIVLMDRASRFIWELSCGKKDRSLFENAIETLAELVVQTKDITLLTDGERRYGKILFEICHE
LLLTGKPGRPKKTLKKGVTVRVKNKGSQTHKKGRKKPKYQTTCPQHPETSNNISDKETHANHVEANNSAMRRKCSAYRRKTNTYAKSETGLQRILNVYWV
IHNFLRVHFTTKEIPAVSLGLIESGLVPEELFSIQCM

 

Blast result :
Comments
References
1] Hallam,S.J., Putnam,N., Preston,C.M., Detter,J.C., Rokhsar,D., Richardson,P.M. and DeLong,E.F. (2004) Science 305 (5689), 1457-1462