ISArch17
- Family IS1
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AY714827 | ND | Uncultured archaeon | Uncultured archaeon GZfos18F2 |
DNA section
IS Length : 1183 bp
Ends
IR Length : 24
IRL : GGCACTGGTTCAGTTGAATAGGTACTGCATCTAGCTTAAAATATATAACA
IRR : GGCACTGGTTCAGTTGAATAGGTAATACAAAGTATCTTAAATTAAGATAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GGCACTGGTTCAGTTGAATAGGTACTGCATCTAGCTTAAAATATATAACAAAGTTCTGAACACAGACAACTAAAGAATGTACGATAATCTACCCCAACTA
ACATAAAAAGGAGTAGATTATGTCACCGTTTCCATTTCCATGTAAATGCCCCAAATGTTCGTCCGAAAATGTCCGATTTGATTATAAATACGATACTATT
TCAAACGGTAGTAGGCAAATGCTTCTTTGCCGAGGCTGTGGGGCTTCATTCTCAGAAACAAAAAACACCTTCCTGCAAAATATCAGGACGCCTGTCAGTA
CGATCTGGAAAGTCTTAAAGTCCCGAACTGAGGGGACGTCTCTAAACGCTACTTGCAGGGTTTTTGATATTGCTAAAAACACCCTGCTTGCTTGGGAACG
AAAATTTTCCAGTTTGTATCATACCCTACTCATCTATTCAATGACGCATACATTTATCCAATTGGTAATCGAAGGCGATGAATTTTATACGAAAGTAGAT
AAAAATGTTCCTGCTGAACAATCATCCGGTTGGACTATCGTCCTTATGGATAGAGCCAGTCGATTCATTTGGGAACTGAGTTGCGGTAAAAAAGACAGAT
CGCTTTTTGAAAATGCAATTGAGACGCTGGCAGAACTTGTCGTTCAAACGAAAGATATAACGCTTCTGACAGATGGAGAACGCCGATATGGAAAAATTCT
CTTTGAAATATGCCATGAACTTTTGCTAACCGGCAAACCTGGTCGCCCCAAAAAAACATTGAAAAAGGGAGTTACTGTCAGGGTAAAAAACAAAGGCTCT
CAAACACATAAGAAAGGACGTAAGAAACCAAAATACCAGACAACATGTCCGCAACACCCTGAAACCTCGAATAATATTTCAGATAAGGAAACACACGCCA
ACCACGTTGAAGCCAACAATAGCGCAATGCGCCGGAAATGTTCAGCATACAGAAGAAAAACAAACACATATGCCAAATCAGAAACCGGCCTTCAACGTAT
TTTGAACGTCTATTGGGTTATCCATAATTTCTTAAGAGTTCATTTTACAACCAAGGAGATACCTGCAGTCAGTTTAGGGCTGATAGAAAGTGGGCTTGTC
CCAGAAGAACTTTTCAGCATCCAATGTATGTAACTATCTTAATTTAAGATACTTTGTATTACCTATTCAACTGAACCAGTGCC
ACATAAAAAGGAGTAGATTATGTCACCGTTTCCATTTCCATGTAAATGCCCCAAATGTTCGTCCGAAAATGTCCGATTTGATTATAAATACGATACTATT
TCAAACGGTAGTAGGCAAATGCTTCTTTGCCGAGGCTGTGGGGCTTCATTCTCAGAAACAAAAAACACCTTCCTGCAAAATATCAGGACGCCTGTCAGTA
CGATCTGGAAAGTCTTAAAGTCCCGAACTGAGGGGACGTCTCTAAACGCTACTTGCAGGGTTTTTGATATTGCTAAAAACACCCTGCTTGCTTGGGAACG
AAAATTTTCCAGTTTGTATCATACCCTACTCATCTATTCAATGACGCATACATTTATCCAATTGGTAATCGAAGGCGATGAATTTTATACGAAAGTAGAT
AAAAATGTTCCTGCTGAACAATCATCCGGTTGGACTATCGTCCTTATGGATAGAGCCAGTCGATTCATTTGGGAACTGAGTTGCGGTAAAAAAGACAGAT
CGCTTTTTGAAAATGCAATTGAGACGCTGGCAGAACTTGTCGTTCAAACGAAAGATATAACGCTTCTGACAGATGGAGAACGCCGATATGGAAAAATTCT
CTTTGAAATATGCCATGAACTTTTGCTAACCGGCAAACCTGGTCGCCCCAAAAAAACATTGAAAAAGGGAGTTACTGTCAGGGTAAAAAACAAAGGCTCT
CAAACACATAAGAAAGGACGTAAGAAACCAAAATACCAGACAACATGTCCGCAACACCCTGAAACCTCGAATAATATTTCAGATAAGGAAACACACGCCA
ACCACGTTGAAGCCAACAATAGCGCAATGCGCCGGAAATGTTCAGCATACAGAAGAAAAACAAACACATATGCCAAATCAGAAACCGGCCTTCAACGTAT
TTTGAACGTCTATTGGGTTATCCATAATTTCTTAAGAGTTCATTTTACAACCAAGGAGATACCTGCAGTCAGTTTAGGGCTGATAGAAAGTGGGCTTGTC
CCAGAAGAACTTTTCAGCATCCAATGTATGTAACTATCTTAATTTAAGATACTTTGTATTACCTATTCAACTGAACCAGTGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1014 bp | 337 aa | 120 | 1133 | + | No |
Chemistry : DDE
ORF sequence :
MSPFPFPCKCPKCSSENVRFDYKYDTISNGSRQMLLCRGCGASFSETKNTFLQNIRTPVSTIWKVLKSRTEGTSLNATCRVFDIAKNTLLAWERKFSSLY
HTLLIYSMTHTFIQLVIEGDEFYTKVDKNVPAEQSSGWTIVLMDRASRFIWELSCGKKDRSLFENAIETLAELVVQTKDITLLTDGERRYGKILFEICHE
LLLTGKPGRPKKTLKKGVTVRVKNKGSQTHKKGRKKPKYQTTCPQHPETSNNISDKETHANHVEANNSAMRRKCSAYRRKTNTYAKSETGLQRILNVYWV
IHNFLRVHFTTKEIPAVSLGLIESGLVPEELFSIQCM
HTLLIYSMTHTFIQLVIEGDEFYTKVDKNVPAEQSSGWTIVLMDRASRFIWELSCGKKDRSLFENAIETLAELVVQTKDITLLTDGERRYGKILFEICHE
LLLTGKPGRPKKTLKKGVTVRVKNKGSQTHKKGRKKPKYQTTCPQHPETSNNISDKETHANHVEANNSAMRRKCSAYRRKTNTYAKSETGLQRILNVYWV
IHNFLRVHFTTKEIPAVSLGLIESGLVPEELFSIQCM
Blast result :
Comments
References
1] Hallam,S.J., Putnam,N., Preston,C.M., Detter,J.C., Rokhsar,D., Richardson,P.M. and DeLong,E.F. (2004) Science 305 (5689), 1457-1462