ISOba3

  • Family IS1
  • Group ISMhu11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAMO01000002 ND Oceanicola batsensis
Oceanicola batsensis HTCC2597
DNA section
IS Length : 2598 bp

Ends


IR Length : 26/28

IRL : GGTAGTGGGTCAGTTTGAAATCTAGCCCCTCGCGCAAACGCGCAGCTTTG
IRR : GGTAGTGGGTCAGTTTGAAATCTTGGCCTGTTACAACCCTTGCAACGCAA

Insertion site


Left flankDirect repeatRight flankDR Length
GCGTCACAGGCCCCGCCTGAGAATGCTGGACCCG8

DNA sequence

GGTAGTGGGTCAGTTTGAAATCTAGCCCCTCGCGCAAACGCGCAGCTTTGATTTGCACCGGATCGCGTCTGGCCCCATATTGGAGGCATGACAGACAAGC
CCAAGAGACCCAAGGACGCGAACCAGTTGGCGAAGTTCATAACGGACTTGGCGACTGGTGAAGCATCTGAGGATGACGCCCCCGAAAAAGCCGAGGGTCA
GCGCAAGGGCGGCTTGAAGGGTGGCAGGGCGCGGGCTGACAGGCTGACGCCGGAAGAACGCAGCAAAATCGCCAAGAAGGCTGCGGCCGCCCGATGGCGG
AACGAAACCTGAATACCTGACATACACCCACCATACACCTCTTGACGTGATAGATTGAACGGTCTAGGAGTCCGGCAGCAGATTGGAGTTGCCGAAATGG
CCGTACTACTCACAACGGATCAGGTCGAGGAATGGAAGGCCGAGCGCGATAAGCTGGTAAAGCGGATCGCCTATCTTGATGAGCGCATCAAGGCCGCATC
CTTTTTCATGGCTGACGATGAAACAGAGAGCGAGCCGTCAGGTGATGATGGCCACCAGAGTTCGCCTGGGCCGTCTCTGGTGGACGCCATCGTTGATGTT
CTGCGGCGGTTTGGCCCCGAACCAATGACCAATCACGCCATCCGAAACCGGCTGACAGATGTTGGCTTTGACATTTCACAGATGAGCCAGAATTACTACT
ACACCGCCACGAAACGCTTGAGCGACAAGGGAACCATCGTGAAACACGATGACGGCACTTACTCGCTTCCTGAGAATGCGGCCCCGGAAGAATCTCTGTA
TAGCGACAGTTCTTCCGGGGCCAATATCGAGAGCCGGTTTAGCCAACCGACTGAACCCCCAGCGCAAGGCCGTGAAGCCGGCCCGGGAGGTGAGACATGA
GGAGGTAAGAACCTCATGTAAGTCGTCAGCCGCGCGGCGGGAGTTGGCCCTCCCAATGCGCGGCTGACGCATTTCTAGCATCCAAAACAGCAACTTGCAA
GGCGAGAATAGGTGATTCCCGTCAATGAGTTATGTCATCTGTGAATTTAAACTGACCGACATGCTTGACTATAGTATGGATAGCACCTACATTGTGAGTA
TGAACAAGTTGGATACCAAAACCCGCTCACTGATCATCCGCCTTTTGGTGGAAGGTAATTCAATTCGCGCCACATCGCGGATTGCTGACGTGAGCAAAAA
CACTGTCAACAAGCTGTTGATAGATGTGGGGAAAGTATGTCACTCGTACCACGATGGAAACGTGCGGGATGTAAAGGCGTCAGTCATCCAGTGCGACGAA
ATCTGGTCATTCACCTATGCCAAGCAAAAGAACGTTGCTGCTGCCAAGGCTGCGCCAGACGGCGCAGGCGACACGTGGACCTGGACGGCTCTGGATAGTG
ATAGCAAGCTGATCGTGTCCTACATGGTAGGTGGGCGCGACAGCGAATATGCTATTGGCTTCATGGACGATCTTTGCTCTCGGCTCGCCAACCGGGTCCA
ACTGACCACGGACGGTCACAAGGCATATCTGGAAGCCGTAGAAGGCGCATTCGGTGGCGACGTTGACTATGCCCAGCTCATCAAGCTGTACGGCGAACCC
ACGGGCCAGAAGGGGCACGAGCGCAAGTATTTTCCGTCAGAATGCACGGGCACCAAGAAACGTGCGGTGGAGGGTCGCCCCGACATGGCGAAGGTAAGCA
CGTCGCACGTTGAGCGGCAGAATCTTACCATGCGGATGCACATGCGCCGCTTTACGCGGCTGACTAACGGGTTCAGCAAGAAGGTTGAGAACCACGCCTA
TGCGGTCGCGCTGCACTTCATGTACTACAATTTCTGCCGCCAGCATCAAACGCTGTGCGTTTCGCCCGCAATGGCCGCCGGTCTGACGGATCGGCTTTGG
GATATTGCTGATCTGGTCGCGCTGGTGGACGCCGCAGAACCCGCGCCGAAGAAGCGCGGACCCTACAAAAAACGAGCGGTGAATTAATGCCAATCAAAGA
GCATCCAGCAATCGGCACGGTTTTGTTGTGTGACTTCACCTCGGGATTCTCGAAGCCCGAAATGCAAAAGCGGCGGCCGTCGTGGTGATCAGCCCAAAGA
TCACTGCTAGACCTTACCTGTGCACTGTCGTTGCCCTAAGCACGGACCCGCCAGTTCCCGTTCTGCCATATCACGCTCAAATCGACATTTTCCCAGAACT
TCCAAAGCCTTGGTCGAGCAAAGGCGTTTGGGTGAAGGGAGACATGGTCAACGCAGTCGGTTTTCATAGACTTGACCTGATCCGAACCGGAAAAGACCGG
GCGGGCAACCGAACTTACATCTATCAGCCCCTAAGTGAGGAAAATTTAAGAATAATTCGGGCGTGCGCTCTTTCAGCCTTGGGGTTGGCGCGCTTGACAA
AATCGCTGTGAGCGATTATTTGGGGTCCCGATAGCGGCTCTCACATGGTGATCCGCGACTAAGACCCCACCAGGGGCCGCCGTGCAACTTCGGTGATTGC
AAACTGAGCCGCACGGCGCAGATAGAAGACCCCGCTTCGGCGGGGTCTTTGCGTTGCAAGGGTTGTAACAGGCCAAGATTTCAAACTGACCCACTACC
Protein section
ORF number : 3

 

ORF 1
LengthBeginEndStrandFusion ORF
225 bp74 aa88312+No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MTDKPKRPKDANQLAKFITDLATGEASEDDAPEKAEGQRKGGLKGGRARADRLTPEERSKIAKKAAAARWRNET

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
504 bp167 aa397900+No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MAVLLTTDQVEEWKAERDKLVKRIAYLDERIKAASFFMADDETESEPSGDDGHQSSPGPSLVDAIVDVLRRFGPEPMTNHAIRNRLTDVGFDISQMSQNY
YYTATKRLSDKGTIVKHDDGTYSLPENAAPEESLYSDSSSGANIESRFSQPTEPPAQGREAGPGGET

 

Blast result :
ORF 3
LengthBeginEndStrandFusion ORF
963 bp320 aa10251987+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSYVICEFKLTDMLDYSMDSTYIVSMNKLDTKTRSLIIRLLVEGNSIRATSRIADVSKNTVNKLLIDVGKVCHSYHDGNVRDVKASVIQCDEIWSFTYAK
QKNVAAAKAAPDGAGDTWTWTALDSDSKLIVSYMVGGRDSEYAIGFMDDLCSRLANRVQLTTDGHKAYLEAVEGAFGGDVDYAQLIKLYGEPTGQKGHER
KYFPSECTGTKKRAVEGRPDMAKVSTSHVERQNLTMRMHMRRFTRLTNGFSKKVENHAYAVALHFMYYNFCRQHQTLCVSPAMAAGLTDRLWDIADLVAL
VDAAEPAPKKRGPYKKRAVN

 

Blast result :
Comments
ISOba3 is 38% aa similar to ISLysp1.
The transposase is the third ORF, others are passengers genes.
References
1] Giovannoni,S.J., Cho,J.-C., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2005) Direct submission GenBank.