ISCysp3
- Family IS66
- Group ISBst12
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAXW00000000 | ND | Cyanothece sp. | Cyanothece sp. CCY0110 |
DNA section
IS Length : 1522 bp
Ends
IR Length : 14
IRL : GTAAGGATTCAGGTGGCAAATATTGACAAACAGGCTGACTGCGCTAAAGT
IRR : GTAAGGATTCAGGTCTAGAAGTTAGGAATTAGGGAAGGAAACAAACAATT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGATGATTTA | ATTGAAGG | AAAAAATACA | 8 |
TAATCTTTTT | CTAATTCT | AAAGGTTGAT | 8 |
ATATTTTTCA | ATCAGAGC | TAGATAATGA | 8 |
ATTGTTCTTT | CTCCAAAC | CATTTGATAT | 8 |
ATCAATAAAA | TTTTAGAG | ACTGAAAAAC | 8 |
TGAGTTTGCT | TTTGAAAG | TCAACGAAAT | 8 |
TAATAGTACA | GTTTATTT | AGCAAAGTTT | 8 |
AAACAAGCAG | CAAGCAGC | TATTTTTTTA | 8 |
ACGTTTAACA | ATATCTTT | TATTTTTTTG | 8 |
TTGTGGTACT | CTTTCTAT | ATCGAAAGTT | 8 |
CTTGTCCAAT | GATAATAc/t | TTAATTTTTT | 10 |
TATAATTTTC | CATGGAATTC | 0 | |
TATGGGATTA | GTATCTTTAT | 0 | |
ACAGAAACAG | CTTCACTCTT | 0 | |
AGCAAGCAGC | GAGAAATGTT | 0 | |
AATGAAAAAG | ATTACATCAG | 0 | |
TCTTGCAAAC | CGATTTTGAC | 0 | |
TGACTTGTAT | AAAATTATCA | 0 |
DNA sequence
GTAAGGATTCAGGTGGCAAATATTGACAAACAGGCTGACTGCGCTAAAGTAACGGTATGAGTCAAACTGAACCAGGAGTACAGTTAAATTCAGACGAATT
AAACCAACTGTCAAAATCTGGGTTGGTACAAATTATCTTGGCTCAACAGAAACTTATCGAGCAGCTACAAAAAGAAATAGAAAAATTAAAGCTCAGTCGT
AATTTAGATAGCCAAACCTCATCAAAACCCCCATCAACAGACTTATTGAAAAAGTCTGAGAAGGCTAAAACAACTGAAGACGATAAGGATAAGAAAAGAA
AACCAGGGGGACAACCTGGACATAAGGGAAAAACAAGGAAAGGCTTTGGGAGAATTGACAGAATTCAAATCTTGCAACCATCAATATGTAGTCACTGTGG
TCAAACAGAATTATTAATAGAACCAGTGAAAGTTGATTCTCAGCAGGTAGCACAACTGGTAGATAAACCCATTGAGGTAGTAGAATATCATCGTCATCAT
TGTCGCTGTGGGCATTGTGGTGAAGTGACCAAAGCGAATTGGTCGCCCAAGACCGTCCCAGGACAAGATTTAGGAGTGAAGTTACAAGCTTTTCTGGGAT
GGTTAGGGAATTATGGACATCTACCTTATGAAAAGCAACAAGAGATGTTGTGGGAGTTAGGGCAAATTGAGATAGGTATGGGGACCATCGTAGCCACCAA
TCAACGAGTAGAAACAGCCATTAATCCGTCGGTTGAACAATTATCCAAGTGGGTCAAAGTAGAACAACCCCCAATTCATGTTGATGAAACACCCTGGCCA
GTGAAGGGAGTCAAAGAATGGTTGTGGGTATTTACCAATCAACTTTTCTGCCTGTTTCGGGCTGCTGATACTAGGGGGCGTAAGGAATTAGAAGATCAGT
TAGGCCATGAATATGGTGGTGTTTTAAGTAGTGATGATTTGGGAGTTTACAATGGTTATACTGTTGTTGCTCAACAGAAATGTTTGGCACATTTACGCCG
TCACTTTCAGCGATTAATAAAAACTCCAGGTCAATATAACAAAACCATCGGTCAAACTTTTCTCAAATTAATTGATGAAGCTTTCCGTCATTATCGTATT
TGGCAAAACGATAAGAATAGGCATGGTTATCAAGTTTGGGCAAGACAATTCAAAGATAAGATAAAGATAGCCACAGAAGAATGGAAGCCTAAAGCCGGTT
ATGAAGCCGGAAAACTTTTGCGAAACCTTCGGCAAAAGGCAGAGCAATGGTGGTATTTTCTGGAGCATCCAGAGATCCCCCCTGATAATAATCTTGCTGA
AAGATCCTTAAGATTAGCCATCACGAAACGGAAAGTTAGTGGGGGTTCAAGAAGCATGGAACGATTTAAACAAACAGCTAACTTATTGACGGTTATTCAA
ACTTGTCGTCGTCAAGAACGTTCGGTGATTGATTTTTTCGAGAAGTCATTAATAGCCAAAGTCGGTCATCCGAATTGTTTGTTTCCTTCCCTAATTCCTA
ACTTCTAGACCTGAATCCTTAC
AAACCAACTGTCAAAATCTGGGTTGGTACAAATTATCTTGGCTCAACAGAAACTTATCGAGCAGCTACAAAAAGAAATAGAAAAATTAAAGCTCAGTCGT
AATTTAGATAGCCAAACCTCATCAAAACCCCCATCAACAGACTTATTGAAAAAGTCTGAGAAGGCTAAAACAACTGAAGACGATAAGGATAAGAAAAGAA
AACCAGGGGGACAACCTGGACATAAGGGAAAAACAAGGAAAGGCTTTGGGAGAATTGACAGAATTCAAATCTTGCAACCATCAATATGTAGTCACTGTGG
TCAAACAGAATTATTAATAGAACCAGTGAAAGTTGATTCTCAGCAGGTAGCACAACTGGTAGATAAACCCATTGAGGTAGTAGAATATCATCGTCATCAT
TGTCGCTGTGGGCATTGTGGTGAAGTGACCAAAGCGAATTGGTCGCCCAAGACCGTCCCAGGACAAGATTTAGGAGTGAAGTTACAAGCTTTTCTGGGAT
GGTTAGGGAATTATGGACATCTACCTTATGAAAAGCAACAAGAGATGTTGTGGGAGTTAGGGCAAATTGAGATAGGTATGGGGACCATCGTAGCCACCAA
TCAACGAGTAGAAACAGCCATTAATCCGTCGGTTGAACAATTATCCAAGTGGGTCAAAGTAGAACAACCCCCAATTCATGTTGATGAAACACCCTGGCCA
GTGAAGGGAGTCAAAGAATGGTTGTGGGTATTTACCAATCAACTTTTCTGCCTGTTTCGGGCTGCTGATACTAGGGGGCGTAAGGAATTAGAAGATCAGT
TAGGCCATGAATATGGTGGTGTTTTAAGTAGTGATGATTTGGGAGTTTACAATGGTTATACTGTTGTTGCTCAACAGAAATGTTTGGCACATTTACGCCG
TCACTTTCAGCGATTAATAAAAACTCCAGGTCAATATAACAAAACCATCGGTCAAACTTTTCTCAAATTAATTGATGAAGCTTTCCGTCATTATCGTATT
TGGCAAAACGATAAGAATAGGCATGGTTATCAAGTTTGGGCAAGACAATTCAAAGATAAGATAAAGATAGCCACAGAAGAATGGAAGCCTAAAGCCGGTT
ATGAAGCCGGAAAACTTTTGCGAAACCTTCGGCAAAAGGCAGAGCAATGGTGGTATTTTCTGGAGCATCCAGAGATCCCCCCTGATAATAATCTTGCTGA
AAGATCCTTAAGATTAGCCATCACGAAACGGAAAGTTAGTGGGGGTTCAAGAAGCATGGAACGATTTAAACAAACAGCTAACTTATTGACGGTTATTCAA
ACTTGTCGTCGTCAAGAACGTTCGGTGATTGATTTTTTCGAGAAGTCATTAATAGCCAAAGTCGGTCATCCGAATTGTTTGTTTCCTTCCCTAATTCCTA
ACTTCTAGACCTGAATCCTTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1452 bp | 483 aa | 57 | 1508 | + | No |
Chemistry : DDE
ORF sequence :
MSQTEPGVQLNSDELNQLSKSGLVQIILAQQKLIEQLQKEIEKLKLSRNLDSQTSSKPPSTDLLKKSEKAKTTEDDKDKKRKPGGQPGHKGKTRKGFGRI
DRIQILQPSICSHCGQTELLIEPVKVDSQQVAQLVDKPIEVVEYHRHHCRCGHCGEVTKANWSPKTVPGQDLGVKLQAFLGWLGNYGHLPYEKQQEMLWE
LGQIEIGMGTIVATNQRVETAINPSVEQLSKWVKVEQPPIHVDETPWPVKGVKEWLWVFTNQLFCLFRAADTRGRKELEDQLGHEYGGVLSSDDLGVYNG
YTVVAQQKCLAHLRRHFQRLIKTPGQYNKTIGQTFLKLIDEAFRHYRIWQNDKNRHGYQVWARQFKDKIKIATEEWKPKAGYEAGKLLRNLRQKAEQWWY
FLEHPEIPPDNNLAERSLRLAITKRKVSGGSRSMERFKQTANLLTVIQTCRRQERSVIDFFEKSLIAKVGHPNCLFPSLIPNF
DRIQILQPSICSHCGQTELLIEPVKVDSQQVAQLVDKPIEVVEYHRHHCRCGHCGEVTKANWSPKTVPGQDLGVKLQAFLGWLGNYGHLPYEKQQEMLWE
LGQIEIGMGTIVATNQRVETAINPSVEQLSKWVKVEQPPIHVDETPWPVKGVKEWLWVFTNQLFCLFRAADTRGRKELEDQLGHEYGGVLSSDDLGVYNG
YTVVAQQKCLAHLRRHFQRLIKTPGQYNKTIGQTFLKLIDEAFRHYRIWQNDKNRHGYQVWARQFKDKIKIATEEWKPKAGYEAGKLLRNLRQKAEQWWY
FLEHPEIPPDNNLAERSLRLAITKRKVSGGSRSMERFKQTANLLTVIQTCRRQERSVIDFFEKSLIAKVGHPNCLFPSLIPNF
Blast result :
Comments
ISCysp3 is 43% aa similar to ISMac8.
References
1] ISfinder annotation (2008).
2] Stal,L., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct Submission GenBank.
2] Stal,L., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct Submission GenBank.