ISCysp3

  • Family IS66
  • Group ISBst12
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAXW00000000 ND Cyanothece sp.
Cyanothece sp. CCY0110
DNA section
IS Length : 1522 bp

Ends


IR Length : 14

IRL : GTAAGGATTCAGGTGGCAAATATTGACAAACAGGCTGACTGCGCTAAAGT
IRR : GTAAGGATTCAGGTCTAGAAGTTAGGAATTAGGGAAGGAAACAAACAATT

Insertion site


Left flankDirect repeatRight flankDR Length
GGATGATTTAATTGAAGGAAAAAATACA8
TAATCTTTTTCTAATTCTAAAGGTTGAT8
ATATTTTTCAATCAGAGCTAGATAATGA8
ATTGTTCTTTCTCCAAACCATTTGATAT8
ATCAATAAAATTTTAGAGACTGAAAAAC8
TGAGTTTGCTTTTGAAAGTCAACGAAAT8
TAATAGTACAGTTTATTTAGCAAAGTTT8
AAACAAGCAGCAAGCAGCTATTTTTTTA8
ACGTTTAACAATATCTTTTATTTTTTTG8
TTGTGGTACTCTTTCTATATCGAAAGTT8
CTTGTCCAATGATAATAc/tTTAATTTTTT10
TATAATTTTCCATGGAATTC0
TATGGGATTAGTATCTTTAT0
ACAGAAACAGCTTCACTCTT0
AGCAAGCAGCGAGAAATGTT0
AATGAAAAAGATTACATCAG0
TCTTGCAAACCGATTTTGAC0
TGACTTGTATAAAATTATCA0

DNA sequence

GTAAGGATTCAGGTGGCAAATATTGACAAACAGGCTGACTGCGCTAAAGTAACGGTATGAGTCAAACTGAACCAGGAGTACAGTTAAATTCAGACGAATT
AAACCAACTGTCAAAATCTGGGTTGGTACAAATTATCTTGGCTCAACAGAAACTTATCGAGCAGCTACAAAAAGAAATAGAAAAATTAAAGCTCAGTCGT
AATTTAGATAGCCAAACCTCATCAAAACCCCCATCAACAGACTTATTGAAAAAGTCTGAGAAGGCTAAAACAACTGAAGACGATAAGGATAAGAAAAGAA
AACCAGGGGGACAACCTGGACATAAGGGAAAAACAAGGAAAGGCTTTGGGAGAATTGACAGAATTCAAATCTTGCAACCATCAATATGTAGTCACTGTGG
TCAAACAGAATTATTAATAGAACCAGTGAAAGTTGATTCTCAGCAGGTAGCACAACTGGTAGATAAACCCATTGAGGTAGTAGAATATCATCGTCATCAT
TGTCGCTGTGGGCATTGTGGTGAAGTGACCAAAGCGAATTGGTCGCCCAAGACCGTCCCAGGACAAGATTTAGGAGTGAAGTTACAAGCTTTTCTGGGAT
GGTTAGGGAATTATGGACATCTACCTTATGAAAAGCAACAAGAGATGTTGTGGGAGTTAGGGCAAATTGAGATAGGTATGGGGACCATCGTAGCCACCAA
TCAACGAGTAGAAACAGCCATTAATCCGTCGGTTGAACAATTATCCAAGTGGGTCAAAGTAGAACAACCCCCAATTCATGTTGATGAAACACCCTGGCCA
GTGAAGGGAGTCAAAGAATGGTTGTGGGTATTTACCAATCAACTTTTCTGCCTGTTTCGGGCTGCTGATACTAGGGGGCGTAAGGAATTAGAAGATCAGT
TAGGCCATGAATATGGTGGTGTTTTAAGTAGTGATGATTTGGGAGTTTACAATGGTTATACTGTTGTTGCTCAACAGAAATGTTTGGCACATTTACGCCG
TCACTTTCAGCGATTAATAAAAACTCCAGGTCAATATAACAAAACCATCGGTCAAACTTTTCTCAAATTAATTGATGAAGCTTTCCGTCATTATCGTATT
TGGCAAAACGATAAGAATAGGCATGGTTATCAAGTTTGGGCAAGACAATTCAAAGATAAGATAAAGATAGCCACAGAAGAATGGAAGCCTAAAGCCGGTT
ATGAAGCCGGAAAACTTTTGCGAAACCTTCGGCAAAAGGCAGAGCAATGGTGGTATTTTCTGGAGCATCCAGAGATCCCCCCTGATAATAATCTTGCTGA
AAGATCCTTAAGATTAGCCATCACGAAACGGAAAGTTAGTGGGGGTTCAAGAAGCATGGAACGATTTAAACAAACAGCTAACTTATTGACGGTTATTCAA
ACTTGTCGTCGTCAAGAACGTTCGGTGATTGATTTTTTCGAGAAGTCATTAATAGCCAAAGTCGGTCATCCGAATTGTTTGTTTCCTTCCCTAATTCCTA
ACTTCTAGACCTGAATCCTTAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1452 bp483 aa571508+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSQTEPGVQLNSDELNQLSKSGLVQIILAQQKLIEQLQKEIEKLKLSRNLDSQTSSKPPSTDLLKKSEKAKTTEDDKDKKRKPGGQPGHKGKTRKGFGRI
DRIQILQPSICSHCGQTELLIEPVKVDSQQVAQLVDKPIEVVEYHRHHCRCGHCGEVTKANWSPKTVPGQDLGVKLQAFLGWLGNYGHLPYEKQQEMLWE
LGQIEIGMGTIVATNQRVETAINPSVEQLSKWVKVEQPPIHVDETPWPVKGVKEWLWVFTNQLFCLFRAADTRGRKELEDQLGHEYGGVLSSDDLGVYNG
YTVVAQQKCLAHLRRHFQRLIKTPGQYNKTIGQTFLKLIDEAFRHYRIWQNDKNRHGYQVWARQFKDKIKIATEEWKPKAGYEAGKLLRNLRQKAEQWWY
FLEHPEIPPDNNLAERSLRLAITKRKVSGGSRSMERFKQTANLLTVIQTCRRQERSVIDFFEKSLIAKVGHPNCLFPSLIPNF

 

Blast result :
Comments
ISCysp3 is 43% aa similar to ISMac8.
References
1] ISfinder annotation (2008).
2] Stal,L., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct Submission GenBank.