ISDre2
- Family IS1380
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP000612 | ND | Desulfotomaculum reducens | Desulfotomaculum reducens MI-1 |
DNA section
IS Length : 1842 bp
Ends
IR Length : 16/22
IRL : CTTAGATACGGAAAGTAAAGTTTAAAAACCCAATAACATCAAGGTCTAAT
IRR : CTTCAAATCGGAAAGTAACTTTCCGAGCCAAGTTAAAGCTCCAAAATAAC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GGGCATAGGA | TTGAA | TTGTTATTTT | 5 |
| AACCATTAAT | TTTAG | AGATAAATAA | 5 |
| GGAGAAATAT | ATAAA | AGGAGTTACC | 5 |
| AAGGTATACT | ATAAA | AAATACCCGT | 5 |
| ACTTTATTAT | ATAAT | GTTAGGTTTA | 5 |
| TATACAATAT | ATAAA | AAAGATATAC | 5 |
| ATAAAGACCA | TTTAT | GTTTTTATCC | 5 |
DNA sequence
CTTAGATACGGAAAGTAAAGTTTAAAAACCCAATAACATCAAGGTCTAATAACCATTTTTTGTTGTAAAAAATTTGACAGAAAAAGAGGGTACACCGCCC
CTTCTACGGAATTGTTTAGCGTCCAAACAAAACATTCCAAAAGGATGGTGACCCTCTGAAATGATGGTATCACAATTTATTACCACAAATCAACTTGAAA
CTTTGACCCGTCAACAACGACGTGATTTGGAACGTAAATATCAGAAGAAATTACATTCTCTTCAACGCCTGACTAGCAAAAGTGATCTTCCGATTAGCTT
TGACAATACTTCTGTAACTGCTTATGGAAATTTTGGCATACTAGAGGCGTTTAAGCAAGCCATTGATTTCAAGGGTATGCTTAAAGGGGTTTCCCTTAAG
CGACATCATAACTGTAAATACTCTGATACAGGGTTGTTAGATACAATCATTGATGCCCTTTCCTTGGGATTATTACGGTTTTCTCATATGAATGCTCTGC
AAACTGACCCTGGATACCAGAAAATTAAAGAAGTAACACAAGTGCCTGACGAAAGCACTTTGCGGAACTTTCTATCTCTTATCTGTGAGCAGGAGGCATT
AAACCAATTGCCTCTGGTGAATCAGGAAATGCTGTCCTTAAAGGCCAAATCCGATCAGCCCCGTGAAGTCTGGCTAGATATTGATGACAGTGTCCTCACT
GTTTTTGGGAAACAGGAAGGATCAAAAGTCGGTTACAATCCTCGGTACCACGGGAGGCCTTCCTACAAGGTAAAGGTAGCATTTATCTCTGGAACTTGCG
AACTAGTCAATGCCGGGTTATATAGTGGGAACGTCGCCAGCAATGGCCAATTTATGGAATTCCTTAAAGAGACATTAGAGATCTTAGCTGCCCAGAATAT
CCTCGTAAAAGGTATCCGCATAGATAAAGGTTTCTTTGATGAGGATAACTTTGCCTACCTGGAAGAACAGGGCATCGAGTATATTTGTAAGGCTAAACTC
ACCAGTAATATGAGAAAGGTCATTAAATACCTTGATGACCAGAACCAGTGGCAGTCTTTGAGCAACCATTATGCTGCAGCAGAAATCACCATTCCATTAC
CTAAATGGTCCAAAGCCCGCAGGTTTGTATTTATCCGTGAAACTCAAGAACCTAAGGCATGCGGCGATCAACTTAACTTTGACCTGAAGACATTCGACTA
CCAGGTGATAATTACTTCTAGTGACGAGCACAACCCAGAGGAGGTATGGCACGAATACAATAAGCGTTGCAATATCGAAAACAAAATTGATGAACTCAAG
GTTGGCTTAGGCTTTGAAAAAATGAGCCAAGCAGAGATGGATCGAAACAAAGCCTTTATGTGGCTCAAAGTATTATCGTATAACCTTCTCAACTGGTTTC
GCTTGGCCTTATTGGATGGCAAAGACAGCCGTGCTGAAGTGCCCACTATCCGCCGTAAAATACTGAATGTACCTGGGAACATTGTAGGCAACAACCGTTA
CCGCCATATAAAGTTAGCCCCTAATCCCTGGCTGCAAAAGGCATTGAAGAATGCTAAGGAAAAATTACAAGAATTCCTTTGCATACAGGCATGGGTTGCC
GTAAGTTCAGGTTAAACAAACTCGAGACTAATCGAATTAATCAAATATGATATCACTGATCCAAAAAAGATGGGTCTTATTAACTGCACCCTAAAATCTA
GCTTTTTATTGGAGTATACAGCAGTGATAACGCTTTCCGAGTGATTAGGCATTCAGGCAACATAGCAGCTCAAGCGGTATAACCAAAAATTGGTTATTTT
GGAGCTTTAACTTGGCTCGGAAAGTTACTTTCCGATTTGAAG
CTTCTACGGAATTGTTTAGCGTCCAAACAAAACATTCCAAAAGGATGGTGACCCTCTGAAATGATGGTATCACAATTTATTACCACAAATCAACTTGAAA
CTTTGACCCGTCAACAACGACGTGATTTGGAACGTAAATATCAGAAGAAATTACATTCTCTTCAACGCCTGACTAGCAAAAGTGATCTTCCGATTAGCTT
TGACAATACTTCTGTAACTGCTTATGGAAATTTTGGCATACTAGAGGCGTTTAAGCAAGCCATTGATTTCAAGGGTATGCTTAAAGGGGTTTCCCTTAAG
CGACATCATAACTGTAAATACTCTGATACAGGGTTGTTAGATACAATCATTGATGCCCTTTCCTTGGGATTATTACGGTTTTCTCATATGAATGCTCTGC
AAACTGACCCTGGATACCAGAAAATTAAAGAAGTAACACAAGTGCCTGACGAAAGCACTTTGCGGAACTTTCTATCTCTTATCTGTGAGCAGGAGGCATT
AAACCAATTGCCTCTGGTGAATCAGGAAATGCTGTCCTTAAAGGCCAAATCCGATCAGCCCCGTGAAGTCTGGCTAGATATTGATGACAGTGTCCTCACT
GTTTTTGGGAAACAGGAAGGATCAAAAGTCGGTTACAATCCTCGGTACCACGGGAGGCCTTCCTACAAGGTAAAGGTAGCATTTATCTCTGGAACTTGCG
AACTAGTCAATGCCGGGTTATATAGTGGGAACGTCGCCAGCAATGGCCAATTTATGGAATTCCTTAAAGAGACATTAGAGATCTTAGCTGCCCAGAATAT
CCTCGTAAAAGGTATCCGCATAGATAAAGGTTTCTTTGATGAGGATAACTTTGCCTACCTGGAAGAACAGGGCATCGAGTATATTTGTAAGGCTAAACTC
ACCAGTAATATGAGAAAGGTCATTAAATACCTTGATGACCAGAACCAGTGGCAGTCTTTGAGCAACCATTATGCTGCAGCAGAAATCACCATTCCATTAC
CTAAATGGTCCAAAGCCCGCAGGTTTGTATTTATCCGTGAAACTCAAGAACCTAAGGCATGCGGCGATCAACTTAACTTTGACCTGAAGACATTCGACTA
CCAGGTGATAATTACTTCTAGTGACGAGCACAACCCAGAGGAGGTATGGCACGAATACAATAAGCGTTGCAATATCGAAAACAAAATTGATGAACTCAAG
GTTGGCTTAGGCTTTGAAAAAATGAGCCAAGCAGAGATGGATCGAAACAAAGCCTTTATGTGGCTCAAAGTATTATCGTATAACCTTCTCAACTGGTTTC
GCTTGGCCTTATTGGATGGCAAAGACAGCCGTGCTGAAGTGCCCACTATCCGCCGTAAAATACTGAATGTACCTGGGAACATTGTAGGCAACAACCGTTA
CCGCCATATAAAGTTAGCCCCTAATCCCTGGCTGCAAAAGGCATTGAAGAATGCTAAGGAAAAATTACAAGAATTCCTTTGCATACAGGCATGGGTTGCC
GTAAGTTCAGGTTAAACAAACTCGAGACTAATCGAATTAATCAAATATGATATCACTGATCCAAAAAAGATGGGTCTTATTAACTGCACCCTAAAATCTA
GCTTTTTATTGGAGTATACAGCAGTGATAACGCTTTCCGAGTGATTAGGCATTCAGGCAACATAGCAGCTCAAGCGGTATAACCAAAAATTGGTTATTTT
GGAGCTTTAACTTGGCTCGGAAAGTTACTTTCCGATTTGAAG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1455 bp | 484 aa | 161 | 1615 | + | No |
Chemistry : DDE
ORF sequence :
MMVSQFITTNQLETLTRQQRRDLERKYQKKLHSLQRLTSKSDLPISFDNTSVTAYGNFGILEAFKQAIDFKGMLKGVSLKRHHNCKYSDTGLLDTIIDAL
SLGLLRFSHMNALQTDPGYQKIKEVTQVPDESTLRNFLSLICEQEALNQLPLVNQEMLSLKAKSDQPREVWLDIDDSVLTVFGKQEGSKVGYNPRYHGRP
SYKVKVAFISGTCELVNAGLYSGNVASNGQFMEFLKETLEILAAQNILVKGIRIDKGFFDEDNFAYLEEQGIEYICKAKLTSNMRKVIKYLDDQNQWQSL
SNHYAAAEITIPLPKWSKARRFVFIRETQEPKACGDQLNFDLKTFDYQVIITSSDEHNPEEVWHEYNKRCNIENKIDELKVGLGFEKMSQAEMDRNKAFM
WLKVLSYNLLNWFRLALLDGKDSRAEVPTIRRKILNVPGNIVGNNRYRHIKLAPNPWLQKALKNAKEKLQEFLCIQAWVAVSSG
SLGLLRFSHMNALQTDPGYQKIKEVTQVPDESTLRNFLSLICEQEALNQLPLVNQEMLSLKAKSDQPREVWLDIDDSVLTVFGKQEGSKVGYNPRYHGRP
SYKVKVAFISGTCELVNAGLYSGNVASNGQFMEFLKETLEILAAQNILVKGIRIDKGFFDEDNFAYLEEQGIEYICKAKLTSNMRKVIKYLDDQNQWQSL
SNHYAAAEITIPLPKWSKARRFVFIRETQEPKACGDQLNFDLKTFDYQVIITSSDEHNPEEVWHEYNKRCNIENKIDELKVGLGFEKMSQAEMDRNKAFM
WLKVLSYNLLNWFRLALLDGKDSRAEVPTIRRKILNVPGNIVGNNRYRHIKLAPNPWLQKALKNAKEKLQEFLCIQAWVAVSSG
Blast result :
Comments
ISDre2 is 43% aa similar to ISEcp1.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E. and Richardson,P. (2007) Direct Submission GenBank.