ISRfsp1
- Family IS66
- Group ISBst12
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_009523 | ND | Roseiflexus sp. | Roseiflexus sp. RS-1 |
DNA section
IS Length : 1503 bp
Ends
IR Length : 12/13
IRL : GTAACTGCCTACCATTCTACGGGAAGTGTGGTAAATTATCGCCGTGGCTG
IRR : GTAACTGCCTAGCCGCCTGCAAGTAGGGAGACTGGCTGGCGAGCGAAGAG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CATTCTACGG | GAAg/cTG | CTACGATTTG | 8 |
DNA sequence
GTAACTGCCTACCATTCTACGGGAAGTGTGGTAAATTATCGCCGTGGCTGAGCAACTGCCGGAAGTAGAAATCCTGCTCAAGCGACTGAGTTCTCTTGAG
GCCCAGATTGTCCGTCTGCAGGCGGAAGCAGCCGATCTGCGAGCGGAGAACGCCCGCCTGCAGGCCGAGAATGACCGTCTCCAGGCCGAGAACATCGAGT
TGAAGCGTCGGTTGGGACCGAACAGCCAGAACAGCCACAAGCCACCCAGCAGCGACGGGTATCGGAAGAAGCGAATACAGCCGGCGCTGCCCAAAGACAA
GAAGCCACGCGGCGGACAGCCTGGGCACACGGGTCGAACCTTACAGGCGGCGGAGCAACCCGACCAGGTGCAGGTTCATTTGCCAGCGCGTTGCGCTGGG
TGTGGGCGGATCATCTCGGCGCATGAATCGCATAAGGGGGCGGGCAAGCGACAGGTGTTTGATAGACCAGGGCCGCGCTTGGTCGTGACCGAACATCGGT
TGGGGGAAATCACATGCTGCCAGCAGGCCCAGCGCGGCGTCTACCCGGCGAATGTGACAGCCAGCGTGCGGGATGGGCCTGGAGTACGAGCACTGGTCAC
CCAGTTGTCGGTGGATCACAACATGCCGCTGGAGCAGATGTGCCGCTTGTTCGAGGACGTGTTTGGATACGCGCTGAACCGTGAGACGGTAGCGACGGCT
CTGGAACAGGGGTATGAACTGGCGGCGGCGGTGGAAGCAGCCACGGTGGAGCAGTTGAAGCGAGCGGAGGTGGCGCATGTTGATGAGACGGGGCTGCGGG
GAGCGGGGAGGCTGCGCTGGCTGCACACCGCGAGCGACAGCCGGTATACCCATCTGTTTGTGCACCCCAAGCGCGGGGGCGAGGCCGTGCGCAGCGATGC
GTCGGTGCGCAAGGATTTCGGCGGACGAGCGATTCATGATTGCTTGCCGGCCTCCTACCAGTTTGAACAGGCCAACCATGGGGCGTGCCTGGCGCACATC
CTGCGCGAACTGCAAGGATTGGTAGAGCAAGGGTCAGCATGGGCAGAGGTGATGCGTGACTTCCTGTGGCATCTGTATGAACAGGCGCGGCCCTTGCAAG
GGGAGGCGGCTGCGGCGGCCCGGAATCGCTATCGGCAGATCGTGAGTGCGGCGGAGTTGGCCGAGCCGCCGCCTGAACAGAAAGCAGGCCCGGGACGCCC
CAAAAGCACAGCGGGGCGTAATGTGCTGCGGCGGCTGAAGGAGCGTGAGGAAGCGGTGCTTGCCTTTGCACTGGTGGAGGGTGTGCCCTTCACCAACAAC
CAGGCTGAGCGAGACTTGCGCCCGGCCAAAGTCAAACAGAAAGTAAGCGGCTGTTTTCGCACTGACCAGGGGGCAGCGGTGTATGCCCGCCTGCAGGCGG
TGATCTCTCCTTGTCACAAACAGGGGCGCAACGTCTTCGCCACGCTGCGCGACCTCTTCGCTCGCCAGCCAGTCTCCCTACTTGCAGGCGGCTAGGCAGT
TAC
GCCCAGATTGTCCGTCTGCAGGCGGAAGCAGCCGATCTGCGAGCGGAGAACGCCCGCCTGCAGGCCGAGAATGACCGTCTCCAGGCCGAGAACATCGAGT
TGAAGCGTCGGTTGGGACCGAACAGCCAGAACAGCCACAAGCCACCCAGCAGCGACGGGTATCGGAAGAAGCGAATACAGCCGGCGCTGCCCAAAGACAA
GAAGCCACGCGGCGGACAGCCTGGGCACACGGGTCGAACCTTACAGGCGGCGGAGCAACCCGACCAGGTGCAGGTTCATTTGCCAGCGCGTTGCGCTGGG
TGTGGGCGGATCATCTCGGCGCATGAATCGCATAAGGGGGCGGGCAAGCGACAGGTGTTTGATAGACCAGGGCCGCGCTTGGTCGTGACCGAACATCGGT
TGGGGGAAATCACATGCTGCCAGCAGGCCCAGCGCGGCGTCTACCCGGCGAATGTGACAGCCAGCGTGCGGGATGGGCCTGGAGTACGAGCACTGGTCAC
CCAGTTGTCGGTGGATCACAACATGCCGCTGGAGCAGATGTGCCGCTTGTTCGAGGACGTGTTTGGATACGCGCTGAACCGTGAGACGGTAGCGACGGCT
CTGGAACAGGGGTATGAACTGGCGGCGGCGGTGGAAGCAGCCACGGTGGAGCAGTTGAAGCGAGCGGAGGTGGCGCATGTTGATGAGACGGGGCTGCGGG
GAGCGGGGAGGCTGCGCTGGCTGCACACCGCGAGCGACAGCCGGTATACCCATCTGTTTGTGCACCCCAAGCGCGGGGGCGAGGCCGTGCGCAGCGATGC
GTCGGTGCGCAAGGATTTCGGCGGACGAGCGATTCATGATTGCTTGCCGGCCTCCTACCAGTTTGAACAGGCCAACCATGGGGCGTGCCTGGCGCACATC
CTGCGCGAACTGCAAGGATTGGTAGAGCAAGGGTCAGCATGGGCAGAGGTGATGCGTGACTTCCTGTGGCATCTGTATGAACAGGCGCGGCCCTTGCAAG
GGGAGGCGGCTGCGGCGGCCCGGAATCGCTATCGGCAGATCGTGAGTGCGGCGGAGTTGGCCGAGCCGCCGCCTGAACAGAAAGCAGGCCCGGGACGCCC
CAAAAGCACAGCGGGGCGTAATGTGCTGCGGCGGCTGAAGGAGCGTGAGGAAGCGGTGCTTGCCTTTGCACTGGTGGAGGGTGTGCCCTTCACCAACAAC
CAGGCTGAGCGAGACTTGCGCCCGGCCAAAGTCAAACAGAAAGTAAGCGGCTGTTTTCGCACTGACCAGGGGGCAGCGGTGTATGCCCGCCTGCAGGCGG
TGATCTCTCCTTGTCACAAACAGGGGCGCAACGTCTTCGCCACGCTGCGCGACCTCTTCGCTCGCCAGCCAGTCTCCCTACTTGCAGGCGGCTAGGCAGT
TAC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1452 bp | 483 aa | 44 | 1495 | + | No |
Chemistry : DDE
ORF sequence :
VAEQLPEVEILLKRLSSLEAQIVRLQAEAADLRAENARLQAENDRLQAENIELKRRLGPNSQNSHKPPSSDGYRKKRIQPALPKDKKPRGGQPGHTGRTL
QAAEQPDQVQVHLPARCAGCGRIISAHESHKGAGKRQVFDRPGPRLVVTEHRLGEITCCQQAQRGVYPANVTASVRDGPGVRALVTQLSVDHNMPLEQMC
RLFEDVFGYALNRETVATALEQGYELAAAVEAATVEQLKRAEVAHVDETGLRGAGRLRWLHTASDSRYTHLFVHPKRGGEAVRSDASVRKDFGGRAIHDC
LPASYQFEQANHGACLAHILRELQGLVEQGSAWAEVMRDFLWHLYEQARPLQGEAAAAARNRYRQIVSAAELAEPPPEQKAGPGRPKSTAGRNVLRRLKE
REEAVLAFALVEGVPFTNNQAERDLRPAKVKQKVSGCFRTDQGAAVYARLQAVISPCHKQGRNVFATLRDLFARQPVSLLAGG
QAAEQPDQVQVHLPARCAGCGRIISAHESHKGAGKRQVFDRPGPRLVVTEHRLGEITCCQQAQRGVYPANVTASVRDGPGVRALVTQLSVDHNMPLEQMC
RLFEDVFGYALNRETVATALEQGYELAAAVEAATVEQLKRAEVAHVDETGLRGAGRLRWLHTASDSRYTHLFVHPKRGGEAVRSDASVRKDFGGRAIHDC
LPASYQFEQANHGACLAHILRELQGLVEQGSAWAEVMRDFLWHLYEQARPLQGEAAAAARNRYRQIVSAAELAEPPPEQKAGPGRPKSTAGRNVLRRLKE
REEAVLAFALVEGVPFTNNQAERDLRPAKVKQKVSGCFRTDQGAAVYARLQAVISPCHKQGRNVFATLRDLFARQPVSLLAGG
Blast result :
Comments
ISRfsp1 is 53% aa similar to ISArch14.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Bryant,D. and Richardson,P. (2007) Direct Submission GenBank.
2] ISfinder annotation (2008).
2] ISfinder annotation (2008).