ISFsp10
- Family IS66
- Group ISBst12
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_007777 | ND | Frankia sp. | Frankia sp. CcI3 |
DNA section
IS Length : 1713 bp
Ends
IR Length : 23/28
IRL : GTAGCTGTTCACGTCGGTTGGGTGGCGGCCTTGTAGATCTTGTTCGGTGA
IRR : GTAGCTGTTCAGCTCGGGTGGTAGGCGGTGCGCTTGGCGCTTATCGGCGT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CGCGTTCACC | GTGATCCC | CGTCTTTCCC | 8 |
DNA sequence
GTAGCTGTTCACGTCGGTTGGGTGGCGGCCTTGTAGATCTTGTTCGGTGATCGTGTGGCGTTCGCGGGCTGGTGGGTGATGATCGGATAGCGTCCGGGAC
GTGGAGTCAGGCGGCCGTCCGACGTACGAGGAACTCGTGCGTCTGCTTGCGGACCGGGACGCCACCATCGCCGCCCAGGCGGCCACGATCGCGGAGCAGG
CGCGGCTGGTCGAGCGGCTGGTCGGGCAGGTGGAGCAGCTCACCGACAGGGTCCGCGAACTGGACCGCCAACTCGGCAGGGACAGTACGAACTCGTCGTG
GCCGTCGTCGTCGGACAGCCCGTATACGAAGAAGAAGGCCAAGCCCCGGTCGTCGCGGACGTCGATGGGCCGGCCGAGGGGTAAGCAGCCCGGCGCGACG
GGCGCGACCCGTCAGATGGTCGACGACCCGGACGAGATCCACACGATCGACCCGTCGTTATGCGCGGACTGCGGGTTCCCGCTGGCCGGAGCGGCGAGGC
TCACGACGCGGCGCCACCAGATCTTCGACCCGCCGCCCCCGCCGCGCCCGTATGTCATCGAGTACCGGATCGTGACGCGGGTCTGTCCGTGCTGCGCGGC
GACGACCGAGGGGCTGACACCCGTCCCGCTGGCGGGCCGGCTTGTCTGGGGCCCGCGGATGCTCGCGCGAGCGGTGTGGCTCGTGTGCGCGCACCACCTC
CCGATCCGCCGCGCCGCGGCGGTCCTGACGGTGATGGTCGGCGCGACGGTCTCCGCCGGCTGGGCCGGCGGCGTGCGAGCCCGCGCCGCGCGTCTGTTGG
AGAACACCTTCCTCCCGCACGTGCGGGCGTTGATCGCCGCCGCGCCGGTCGCGCACGCCGACGAGACGACCGCCCGCGCCGACGGCGCGCTGCGCTACGT
CCACGTCGCCGCCACCGACTACCTGACCGCGCTGCACACCGGTGACCGGACCGCCGAGACGATCGACGCCGGCGGGATCTGGCCGGCGTTCACCGGCGTG
CTGATGCGGGACGGCTACCAGGGCTACACCCACCTCACCCGGGCGCTGCACGCCTGGTGCGGCGCGCACACCCTGCGCGACCTGCGGTCCATCCATGACG
GCGACCGTGGCGGGCAGGTCTGGGCCGACGCGATGGCGACCACCCTGCTCGACGCCCACCACGCCGCGTGCGACGCCCGCGACGCCGGGGCGAACGCGCT
CGCGCCCGAGGCCGTCGCCCTCATCCGCAACCACTACCGCGGCGCGCTCGCCCGCGGCGAGACCGACAACCACGGGGACCGCTCGTCACTCGCCCACGAC
GCTCGCACACTGATCCGCCGGATGCGCCGCGAGGAGGACATGATCCTCCGCTTCGTCGTCGACCTGACCGTGCCCTTCTCGAACAATCAAGCAGAAAGGG
ACGTCAGGCCGGTCAAGGTCCAGCAACGCACCTCCGGTGGTTGCTGGCGGACCCTGGCCGGCCTCGTCGACTTCGCGGTCGTGCAGTCCTACCTGTCGAC
CGCGACCAAGTGGGGCCTCGACACCCTCGACGTTCTCGAACGACTCTTCACGACCGGCCCCTGGCTACCGCCCGCCGCTGAACCCGGCTGACGCGGCCAG
CCTGCCATACCGTCAAACGACGAACCCCGTGCGCATCGCGCACGGGGCGCTCCGCCTGCCCTGACGCCGATAAGCGCCAAGCGCACCGCCTACCACCCGA
GCTGAACAGCTAC
GTGGAGTCAGGCGGCCGTCCGACGTACGAGGAACTCGTGCGTCTGCTTGCGGACCGGGACGCCACCATCGCCGCCCAGGCGGCCACGATCGCGGAGCAGG
CGCGGCTGGTCGAGCGGCTGGTCGGGCAGGTGGAGCAGCTCACCGACAGGGTCCGCGAACTGGACCGCCAACTCGGCAGGGACAGTACGAACTCGTCGTG
GCCGTCGTCGTCGGACAGCCCGTATACGAAGAAGAAGGCCAAGCCCCGGTCGTCGCGGACGTCGATGGGCCGGCCGAGGGGTAAGCAGCCCGGCGCGACG
GGCGCGACCCGTCAGATGGTCGACGACCCGGACGAGATCCACACGATCGACCCGTCGTTATGCGCGGACTGCGGGTTCCCGCTGGCCGGAGCGGCGAGGC
TCACGACGCGGCGCCACCAGATCTTCGACCCGCCGCCCCCGCCGCGCCCGTATGTCATCGAGTACCGGATCGTGACGCGGGTCTGTCCGTGCTGCGCGGC
GACGACCGAGGGGCTGACACCCGTCCCGCTGGCGGGCCGGCTTGTCTGGGGCCCGCGGATGCTCGCGCGAGCGGTGTGGCTCGTGTGCGCGCACCACCTC
CCGATCCGCCGCGCCGCGGCGGTCCTGACGGTGATGGTCGGCGCGACGGTCTCCGCCGGCTGGGCCGGCGGCGTGCGAGCCCGCGCCGCGCGTCTGTTGG
AGAACACCTTCCTCCCGCACGTGCGGGCGTTGATCGCCGCCGCGCCGGTCGCGCACGCCGACGAGACGACCGCCCGCGCCGACGGCGCGCTGCGCTACGT
CCACGTCGCCGCCACCGACTACCTGACCGCGCTGCACACCGGTGACCGGACCGCCGAGACGATCGACGCCGGCGGGATCTGGCCGGCGTTCACCGGCGTG
CTGATGCGGGACGGCTACCAGGGCTACACCCACCTCACCCGGGCGCTGCACGCCTGGTGCGGCGCGCACACCCTGCGCGACCTGCGGTCCATCCATGACG
GCGACCGTGGCGGGCAGGTCTGGGCCGACGCGATGGCGACCACCCTGCTCGACGCCCACCACGCCGCGTGCGACGCCCGCGACGCCGGGGCGAACGCGCT
CGCGCCCGAGGCCGTCGCCCTCATCCGCAACCACTACCGCGGCGCGCTCGCCCGCGGCGAGACCGACAACCACGGGGACCGCTCGTCACTCGCCCACGAC
GCTCGCACACTGATCCGCCGGATGCGCCGCGAGGAGGACATGATCCTCCGCTTCGTCGTCGACCTGACCGTGCCCTTCTCGAACAATCAAGCAGAAAGGG
ACGTCAGGCCGGTCAAGGTCCAGCAACGCACCTCCGGTGGTTGCTGGCGGACCCTGGCCGGCCTCGTCGACTTCGCGGTCGTGCAGTCCTACCTGTCGAC
CGCGACCAAGTGGGGCCTCGACACCCTCGACGTTCTCGAACGACTCTTCACGACCGGCCCCTGGCTACCGCCCGCCGCTGAACCCGGCTGACGCGGCCAG
CCTGCCATACCGTCAAACGACGAACCCCGTGCGCATCGCGCACGGGGCGCTCCGCCTGCCCTGACGCCGATAAGCGCCAAGCGCACCGCCTACCACCCGA
GCTGAACAGCTAC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1455 bp | 484 aa | 137 | 1591 | + | No |
Chemistry : DDE
ORF sequence :
VRLLADRDATIAAQAATIAEQARLVERLVGQVEQLTDRVRELDRQLGRDSTNSSWPSSSDSPYTKKKAKPRSSRTSMGRPRGKQPGATGATRQMVDDPDE
IHTIDPSLCADCGFPLAGAARLTTRRHQIFDPPPPPRPYVIEYRIVTRVCPCCAATTEGLTPVPLAGRLVWGPRMLARAVWLVCAHHLPIRRAAAVLTVM
VGATVSAGWAGGVRARAARLLENTFLPHVRALIAAAPVAHADETTARADGALRYVHVAATDYLTALHTGDRTAETIDAGGIWPAFTGVLMRDGYQGYTHL
TRALHAWCGAHTLRDLRSIHDGDRGGQVWADAMATTLLDAHHAACDARDAGANALAPEAVALIRNHYRGALARGETDNHGDRSSLAHDARTLIRRMRREE
DMILRFVVDLTVPFSNNQAERDVRPVKVQQRTSGGCWRTLAGLVDFAVVQSYLSTATKWGLDTLDVLERLFTTGPWLPPAAEPG
IHTIDPSLCADCGFPLAGAARLTTRRHQIFDPPPPPRPYVIEYRIVTRVCPCCAATTEGLTPVPLAGRLVWGPRMLARAVWLVCAHHLPIRRAAAVLTVM
VGATVSAGWAGGVRARAARLLENTFLPHVRALIAAAPVAHADETTARADGALRYVHVAATDYLTALHTGDRTAETIDAGGIWPAFTGVLMRDGYQGYTHL
TRALHAWCGAHTLRDLRSIHDGDRGGQVWADAMATTLLDAHHAACDARDAGANALAPEAVALIRNHYRGALARGETDNHGDRSSLAHDARTLIRRMRREE
DMILRFVVDLTVPFSNNQAERDVRPVKVQQRTSGGCWRTLAGLVDFAVVQSYLSTATKWGLDTLDVLERLFTTGPWLPPAAEPG
Blast result :
Comments
ISFsp10 is 47% aa similar to ISMac24.
References
1] Normand,P., Lapierre,P., Tisa,L.S., Gogarten,J.P., Alloisio,N., Bagnarol,E., Bassi,C.A., Berry,A.M., Bickhart,D.M., Choisne,N., Couloux,A., Cournoyer,B., Cruveiller,S., Daubin,V., Demange,N., Francino,M.P., Goltsman,E., Huang,Y., Kopp,O.R., Labarre,L., Lapidus,A., Lavire,C., Marechal,J., Martinez,M., Mastronunzio,J.E., Mullin,B.C., Niemann,J., Pujic,P., Rawnsley,T., Rouy,Z., Schenowitz,C., Sellstedt,A., Tavares,F., Tomkins,J.P., Vallenet,D., Valverde,C., Wall,L.G., Wang,Y., Medigue,C. and Benson,D.R. (2007)Genome Res. 17 (1), 7-15.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Goltsman,E., Martinez,M., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Lykidis,A., Francino,P., Benson,D.R., Huang,Y., Mastronunzio,J., Bickhart,D., Niemann,J., Rawnsley,T., Tisa,L.S. and Richardson,P. (2006) Direct Submission GenBank.
3] ISfinder annotation (2008).
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Goltsman,E., Martinez,M., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Lykidis,A., Francino,P., Benson,D.R., Huang,Y., Mastronunzio,J., Bickhart,D., Niemann,J., Rawnsley,T., Tisa,L.S. and Richardson,P. (2006) Direct Submission GenBank.
3] ISfinder annotation (2008).