ISPto7
- Family IS66
- Group ISBst12
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_AAPR00000000 | ND | Psychroflexus torquis | Psychroflexus torquis ATCC 700755 |
DNA section
IS Length : 1700 bp
Ends
IR Length : 16/17
IRL : GTAACTAATCAGTACTAAGTTTCGGATGGTTATTTTAGGAAGTCCTTAGG
IRR : GTAACTAATCAGTCTACCCGTTGAAACTCAAATTTAGCGATAAGCGCTAA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GGACAGGATA | AAATAGGG | TTAATTTGTA | 8 |
| ATTATATAAT | CTTTGTTT | AAATCAATTG | 8 |
DNA sequence
GTAACTAATCAGTACTAAGTTTCGGATGGTTATTTTAGGAAGTCCTTAGGTTATTAACATTTTTAATTGTCTTATTAACAAGATTTTGTTTCTGTTTTTT
TTCAAATTGGAAAAACATTGATTTTATCCATATCAGTTAACAACTTCTTTTGTTTTCTTGATAACTCGTGGTTTTTTACACCGCTATTTTAGCTGTATTG
TAGGTACTTTGAATAAAACTGTTTTTTGTCAATAAAGCCAACATATCAAGAGTTGTATGCGACGTTTACTTCTCTCGCTAGACAAGTAAATGAACTTGAA
GGCTTGGCAAATCAGAACCAAGCATTGATCCAAGAGAATCAAGGATTAATTAAAGAGAACCGAGGTATCATAAAGCAAAATCAGCTACTGTTAAAAGAGA
ATAGACAGTTAAAGGATAAATTATTTACCTACGAAAATCCAAAAAACAGTCGCAACAGCTCTATGCCTCCTTCAAAGGATGAAAACCATCCTAAACCAAA
TCAAAGTTTGCGCAAATCATCTGATCGAAAAGTAGGCGGTCAAAAAGGACGAAAAGGCAAAACTTTAGAGATGACAGCTCATCCCGATGAGATTATAGAA
TTAGTACCCGATTATTGTACTTCTTGTGGAAACGCATTACAAGACTTTTCTCCACAGAAAGAACAATCCCGTCAAATAGTTGATATTCCGCCTATCAAGG
CTGTTTTTAAAGAATATCAAACTTTTAGTAAAATTTGTAATTGTGGATGTACATCTACCGCAGACTTTCCATCTGGAGTAAACACTTCTATTAGCTATGG
CGAAAATATAGAAGGACTTGTCGCTTATTTTCATGCGCGTCAATTCTTGCCTTTTGCAAGAATGCAAGAAGTCTTTAACGCTGTTTTTAACATCCATATT
AGTGAAGGTGGAATTCATTGTTTGTTAAATCGTTTTTCCGATAAAACAAAACCAATTTATGAAATTATAAAACAAAGGGTCTGCAATAGTACAGTTATTG
GTGCAGATGAAACAGGGGTGAAAGTAAACAGAAGCAAACACTGGTTTTGGACTTGGCAAACCCCTAATCTAACCTATATTACGCATTCAAGAAACAGAAA
AGGCGAAACGGTAACAACTCATTTTCCAAATGGATTTCCCAATAGTACACTAGTACATGATGGATGGAAACCACACCTAAACACGTTTGCTAAAAATCAT
CAAAGTTGTTTGCCTCACTTGCAGCGCAGATTAAATTACTTGAATCTAAAATATAAATCTGCTACTTGGGGTCTTGATTTTTCTAAACTTCTCTATGATG
CTTTAGAACTTAAAAAAACACTGCCATTTCAAAATAAAGAGTACACCATTGAGCGCGCAAAAATAATTCAAAAACTCCAATGCTTATTAGAAAAACCGCC
TGATAAAACTCATAAAGAACTCTTTAGCTTTTATAAACGGATGCGGCGTGAAAGACAGCATTTATTCACCTTTCTTTTCCTAGAAAATGTGCCAGCAGAC
AATAATGCCTCTGAAAGAGCTATTAGAAATGTAAAGGTAAAACAAAAAATATCTGGTCAATTTAAAATTGAACAAGCCGCACAAAATTTTGCGCAAATAC
GATCTGTCATAGACACCATAATTAAAAATGGGCTAAATGTCTTGGATGAATTAGCGCTTATCGCTAAATTTGAGTTTCAACGGGTAGACTGATTAGTTAC
TTCAAATTGGAAAAACATTGATTTTATCCATATCAGTTAACAACTTCTTTTGTTTTCTTGATAACTCGTGGTTTTTTACACCGCTATTTTAGCTGTATTG
TAGGTACTTTGAATAAAACTGTTTTTTGTCAATAAAGCCAACATATCAAGAGTTGTATGCGACGTTTACTTCTCTCGCTAGACAAGTAAATGAACTTGAA
GGCTTGGCAAATCAGAACCAAGCATTGATCCAAGAGAATCAAGGATTAATTAAAGAGAACCGAGGTATCATAAAGCAAAATCAGCTACTGTTAAAAGAGA
ATAGACAGTTAAAGGATAAATTATTTACCTACGAAAATCCAAAAAACAGTCGCAACAGCTCTATGCCTCCTTCAAAGGATGAAAACCATCCTAAACCAAA
TCAAAGTTTGCGCAAATCATCTGATCGAAAAGTAGGCGGTCAAAAAGGACGAAAAGGCAAAACTTTAGAGATGACAGCTCATCCCGATGAGATTATAGAA
TTAGTACCCGATTATTGTACTTCTTGTGGAAACGCATTACAAGACTTTTCTCCACAGAAAGAACAATCCCGTCAAATAGTTGATATTCCGCCTATCAAGG
CTGTTTTTAAAGAATATCAAACTTTTAGTAAAATTTGTAATTGTGGATGTACATCTACCGCAGACTTTCCATCTGGAGTAAACACTTCTATTAGCTATGG
CGAAAATATAGAAGGACTTGTCGCTTATTTTCATGCGCGTCAATTCTTGCCTTTTGCAAGAATGCAAGAAGTCTTTAACGCTGTTTTTAACATCCATATT
AGTGAAGGTGGAATTCATTGTTTGTTAAATCGTTTTTCCGATAAAACAAAACCAATTTATGAAATTATAAAACAAAGGGTCTGCAATAGTACAGTTATTG
GTGCAGATGAAACAGGGGTGAAAGTAAACAGAAGCAAACACTGGTTTTGGACTTGGCAAACCCCTAATCTAACCTATATTACGCATTCAAGAAACAGAAA
AGGCGAAACGGTAACAACTCATTTTCCAAATGGATTTCCCAATAGTACACTAGTACATGATGGATGGAAACCACACCTAAACACGTTTGCTAAAAATCAT
CAAAGTTGTTTGCCTCACTTGCAGCGCAGATTAAATTACTTGAATCTAAAATATAAATCTGCTACTTGGGGTCTTGATTTTTCTAAACTTCTCTATGATG
CTTTAGAACTTAAAAAAACACTGCCATTTCAAAATAAAGAGTACACCATTGAGCGCGCAAAAATAATTCAAAAACTCCAATGCTTATTAGAAAAACCGCC
TGATAAAACTCATAAAGAACTCTTTAGCTTTTATAAACGGATGCGGCGTGAAAGACAGCATTTATTCACCTTTCTTTTCCTAGAAAATGTGCCAGCAGAC
AATAATGCCTCTGAAAGAGCTATTAGAAATGTAAAGGTAAAACAAAAAATATCTGGTCAATTTAAAATTGAACAAGCCGCACAAAATTTTGCGCAAATAC
GATCTGTCATAGACACCATAATTAAAAATGGGCTAAATGTCTTGGATGAATTAGCGCTTATCGCTAAATTTGAGTTTCAACGGGTAGACTGATTAGTTAC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1467 bp | 488 aa | 226 | 1692 | + | No |
Chemistry : DDE
ORF sequence :
LSIKPTYQELYATFTSLARQVNELEGLANQNQALIQENQGLIKENRGIIKQNQLLLKENRQLKDKLFTYENPKNSRNSSMPPSKDENHPKPNQSLRKSSD
RKVGGQKGRKGKTLEMTAHPDEIIELVPDYCTSCGNALQDFSPQKEQSRQIVDIPPIKAVFKEYQTFSKICNCGCTSTADFPSGVNTSISYGENIEGLVA
YFHARQFLPFARMQEVFNAVFNIHISEGGIHCLLNRFSDKTKPIYEIIKQRVCNSTVIGADETGVKVNRSKHWFWTWQTPNLTYITHSRNRKGETVTTHF
PNGFPNSTLVHDGWKPHLNTFAKNHQSCLPHLQRRLNYLNLKYKSATWGLDFSKLLYDALELKKTLPFQNKEYTIERAKIIQKLQCLLEKPPDKTHKELF
SFYKRMRRERQHLFTFLFLENVPADNNASERAIRNVKVKQKISGQFKIEQAAQNFAQIRSVIDTIIKNGLNVLDELALIAKFEFQRVD
RKVGGQKGRKGKTLEMTAHPDEIIELVPDYCTSCGNALQDFSPQKEQSRQIVDIPPIKAVFKEYQTFSKICNCGCTSTADFPSGVNTSISYGENIEGLVA
YFHARQFLPFARMQEVFNAVFNIHISEGGIHCLLNRFSDKTKPIYEIIKQRVCNSTVIGADETGVKVNRSKHWFWTWQTPNLTYITHSRNRKGETVTTHF
PNGFPNSTLVHDGWKPHLNTFAKNHQSCLPHLQRRLNYLNLKYKSATWGLDFSKLLYDALELKKTLPFQNKEYTIERAKIIQKLQCLLEKPPDKTHKELF
SFYKRMRRERQHLFTFLFLENVPADNNASERAIRNVKVKQKISGQFKIEQAAQNFAQIRSVIDTIIKNGLNVLDELALIAKFEFQRVD
Blast result :
Comments
ISPto7 is 48% aa similar to ISMac24.
References
1] ISfinder annotation (2008).
2] Bowman,J., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C.(2006) Direct Submission GenBank.
2] Bowman,J., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C.(2006) Direct Submission GenBank.