ISMbu12

  • Family IS66
  • Group ISBst12
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007955 ND Methanococcoides burtonii
Methanococcoides burtonii DSM 6242
DNA section
IS Length : 1633 bp

Ends


IR Length : 19/21

IRL : GTAACTATTCAGCCACCTTTGCGTGCTAAAATCCCCCCACCTCAATCTAT
IRR : GTAACTATTCAGCCTACCTATAGTCAATCCTGTATTACCAACCTTTACAC

Insertion site


Left flankDirect repeatRight flankDR Length
GCGAACTTAACAATTTCTTTTGATATTT8

DNA sequence

GTAACTATTCAGCCACCTTTGCGTGCTAAAATCCCCCCACCTCAATCTATTTCATCTTCTGACATGGATTTTTACGAAAAAAGCAAGTAGTAGCATTCTA
TTTAAGTTCACACCCAAAAAATCAATTGGTTTTGCCAAACAGGAGGTGAATGAACACGAAACGCAAAGAAATCCTAGCAGTTTATGAACAAGGTCCCGAA
GCAGTTGTCACTCTTGTCACTACATTGTACGACATCATTGCTGAACAACAAAAGATCATAGAACTACAAGCTGCCAGAATAACCGAACTCGAAGAACGAG
TTAAAAAGTTGGAAGAGCAACTCAAAAAAAACAGCCGAAACAGCAGTAAACCACCTTCAACTGATGTTTTTATTAATGAGAAACCAAAAACAAAAAGCAG
ACGAAAAAAGAGTGGAAAGAAACCAGGTGGTCAGAAAGACCATCCTGGAACTACTCTCAGAATGGTAGATGTTCCTGACGAAGTTATAATTCACAAAGTA
CACAAATGTAGCAATTGTGAAAGATCGCTTGAAGATATAGAAGTTAAAGATCATGAAAAAAGGCAAGTATTTGACATACCTCCCATTAAACTTCAAGTAA
CAGAACATCGTGCTGAAATCAAGTCCTGTCCTCACTGCGGTTGCAAGAACAAAGCTACTTTTTCAGAAAAGGTTAAACAACCCACGCAATATGGCTTACG
TCTTGCATCATTAGCAGTCTACTTACATGATTATCAATTACTTCCTTATGATCGCAGCTGTGAATTGCTAGCTGATGTTTGTGGATGTGAAATAAGTCCC
GCTACTTTGGCTAGGGCAGAGAAGACATGTTTTGAAAAACTTGAAGATTTCGAACAGCAGATCAAGAACTTCTTAATAGAATCTCCTGTGATAAATTGTG
ATGAAACTGGTATGAGGATAGAAGGAAAACGACAGTGGTTACATGTTGCTTCTACAAACAAAATGACATGTTATTATCCTCATCAAAAAAGAGGCTCTGA
CGCAATGAATGCGATGGGAATCTTACCAAATTTTAATGGTACAGTAGTTCATGATTTCTGGAAATCATATTACAAATATGATTGTGATCATTCGATCTGT
AATGCTCATCTATTGCGAGAATTAACAAGTGTAAGCGAGAACGATGATCAATTGTGGTCAAAAGCTATGAATATTCTACTTATTGATGTCAAAAAGTCAG
TTGACCAGATCCGAGAAATGTCTGGTTGTATGAAACCAGAGAGAATTAAAGAGTTTGAAGATTGGTACGGCCAGATAATTCATATTGGGATAGAAGAAAA
TCCTCAACTTCAAGCCAAATCAAAAAATGATATTCTCAGATTTATGCATGATCTAAAAGTTCCATTTGAGAATAATCTTGCAGAAAGGGATGTGAGAATG
ATGAAAGTACAGCAGAAGATATCAGGTACATTCCGAAGTATGCAAGGAGCATTAATTTTCTCGCGGGTAAGAAGTTACATTTCTACTGTTAAGAAGAATC
AAGTTCCTGTGATGGATGCAATTCGAAATGCAATTGCTGGAATGCCATTTATTCCAACAATTGTTTGAGCTTCTAATTTTTTTGTGTAAAGGTTGGTAAT
ACAGGATTGACTATAGGTAGGCTGAATAGTTAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1419 bp472 aa1501568+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNTKRKEILAVYEQGPEAVVTLVTTLYDIIAEQQKIIELQAARITELEERVKKLEEQLKKNSRNSSKPPSTDVFINEKPKTKSRRKKSGKKPGGQKDHPG
TTLRMVDVPDEVIIHKVHKCSNCERSLEDIEVKDHEKRQVFDIPPIKLQVTEHRAEIKSCPHCGCKNKATFSEKVKQPTQYGLRLASLAVYLHDYQLLPY
DRSCELLADVCGCEISPATLARAEKTCFEKLEDFEQQIKNFLIESPVINCDETGMRIEGKRQWLHVASTNKMTCYYPHQKRGSDAMNAMGILPNFNGTVV
HDFWKSYYKYDCDHSICNAHLLRELTSVSENDDQLWSKAMNILLIDVKKSVDQIREMSGCMKPERIKEFEDWYGQIIHIGIEENPQLQAKSKNDILRFMH
DLKVPFENNLAERDVRMMKVQQKISGTFRSMQGALIFSRVRSYISTVKKNQVPVMDAIRNAIAGMPFIPTIV

 

Blast result :
Comments
ISMbu12 is 95% aa similar to ISMbu5.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Kadner,K., Aerts,A., Dehal,P., Pitluck,S., Martinez,M., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Anderson,I., Franzmann,P., Thomas,T., Saunders,N., Cavicchioli,R., Sowers,K. and Richardson,P. (2006) Direct Submission GenBank.

2] ISfinder annotation (2008).