ISSst2

  • Family IS1595
  • Group ISNha5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAYA01000001 ND Sagittula stellata
Sagittula stellata E-37
DNA section
IS Length : 3454 bp

Ends


IR Length : 34

IRL : CGGCATTATGGAGCAAACTCACCAAATATGGTTACATCACCATCAGAAAG
IRR : CGGCATTATGGAGCAAACTCACCAAATATGGTTAGTTGAATAACCTGAAA

Insertion site


Left flankDirect repeatRight flankDR Length
CGGGCTTTTCTCT TATTTCTCGGGAACTC CGGGAACTCGTC0
CAGCACGGCGCGC GGGAACTCTATTTCTC GGATGAGCCGGA0

DNA sequence

CGGCATTATGGAGCAAACTCACCAAATATGGTTACATCACCATCAGAAAGTTTTCCACTACACTAAGCTACTGGATTCACGAAATATTTCAAATCCATTC
CCAACATGTCCACAACTTTCACACAAGCCTTTGAACAGATTCAATAAGTGGACTCAGATACTTGCCTAAGTCGGCGCTTTGATTTCCAGCAAGAGAAAGG
GTACACCTTTAGGTATCAACTGCGACACGGTGATTACTCTGCCTGCCGTGGCGAGGTCTTAGGACTGAGGCAGTATGCGGGTTCTGGCAGGCCCGCCAGT
TGATGTAGCGGGCTGCGCTTTCGGGCGCGGTCCGCACTTACAAGTGCGCACGCAAGATTGGCCCTTGTCGCGACAGTTGACGGACTTGTTTTGCTTTAAT
CCGGTAGAACGAATCCACCCAAACTTCTGTGCCGTTTTTTGCTGACTTCAAAGCACACCTATAGTTTTTTCCATGGTCCGCGTAGTATCCGACAAGAACC
TGCCTTGGATTCTTCTCGACTTGGACCACCACACCGCTCGCGATAGCGAGCGGTAGCCAGAGCAAATCAAAGTCGGTTACGTCGGGGTGCTTCTCGGCAA
TGTGGCGCAAGCCAGATTGCCCCAAATACACCCAAGGGCAAGGCCAGGATAGTTGGCGCCAAACGGAATCTGGGAGCACGCCTACCTGCCTAGGCTGCCC
GTTCCTAACCTGCTGAACGTGCTCAAGAGTAAAAGTCATAAGGCGCGTAATTCATCGCCTGCTTGTCTCTACGTCAAGATCTAAAGCTTCCGTACACTGA
AACAAGAACGCCGCGCTAAACCCGCCTCGGCTTATCTTGTTCGCAACACCGCCCTTGCTCATCTCAACGCCTATCGCGGCCAACCTTTCGGTTAGCTGCT
CTATGGTTACGCCTTGCTGGCGCATAGCATCGCGCAAGAACTCCTTGGCCCGGTCTTCAAACTCTGCGTTGACAGGGCTGCCCTTCCTAGCGGTGGGCTT
CGGCGGCGCCCGCCGCTCGACCTTTCCGATTGCGTTCATATCTAGCCTCAATAATCACCGGATATGGTGATAATAACTGTTGACGGCCCGGTTGTCCAAT
GCGATAACGTAGTCACCATATAAGGTGATTCCCAGATGCCCCAGCACTTCCTCCTCTCTCCGAAAGCCAAGACCCTCTCGCTGGTCAAGATCATGCGCAT
GTCGGAAGAAGAGGCACGCAAGGCATTCCAAGGCCTGCGCTGGCCGGAAACTGATGGTGAGCCGATCTGCCCGGAATGTGGTTGCGTCGAGCATTACGAC
CTCAAGACCCGCCCTGTGTGGAAGTGCAAAGGCTGCGGCAAGCAGTTCAGCGCCACCAGCGGCACAACGTTTCACAGCCGCAAGCTGGCGATCCGCGACA
TTCTCGCCGCCATCGCCGTCTTCATAAACGGCGCTAAGGGCTACAGCGCCCTTCAACTGTCCCGCGATCTGGCCGTTGACTACAAGACTGCGTTTGTCCT
GCTGCACAAGGTTCGTGAAGCCATAGAGAACGCTCGCGAAGCTGGCGCCCTGAAAGGTGACGTTGAGGTTGATGGCGCCTACTTCGGTGGGTACGTGAAG
CCCGCCAACGAGCGCAAAGACCGCAAAGACCGTCGCAAGTTGGAGAACCAAACCGGCAAGCGCCAAGTTGTTGTCGTTGTCCGTGAGCGTGGCGGTCGCA
CTGTTACCAGCGTTGGCAAGACCGAAGCAGAGGGCGTGCAATTGGTTGCACGGACCGTCGAGCGCGGCGCAACGGTTCATGCTGATGAGGCGTCCCATTG
GGACCGTCTGGCAGCTGCGTTCCCGATAAAGCGCATCAACCACAAAGAGGCATACTCCAAGGACGGCGCCTGCACTAACCAAGCCGAGAGCTTCTTTAGC
CGCCTTCGCCGCGCTGAGATCGGCACGCATCACCATATTGCTGGCGCATACCTCGGTGCGTACGCTGCTGAAATGGCTTGGCGTGAGGACAACAACCGCG
TTGCCAATGGATATCAGTTTGTCATGGCGGCGGGTGCCGCAGCGCTTGGCGGGAAGTCCGAGCGGATGTGTGGATACTGGCAGCGACGCGCCTAATAGGA
TGGATTCTGGACAAGAATCTTGACCAAACCAACCAAGCCAGATAAAAGCACAGACATCGGCGAGGAGTGGAAACCGCGCCGATGCCTGCTCTGAAACCCC
TGTGGAGGGGATCAGGTTGGTAGAATGTCCCCCAACGGGGCTGCACCCGGATAGCCATGCTACGGCATCGCACACCGGCTGGAAGGGGTTATCCTCATGG
GTTCCCCCTATGATACTCCCGGCAACTTCCAGTGCCGGGTCTGGCCTGAGGGGTCAGGAATGATAGCCGAGCAGGTCCCCGTCTTTGCCCTGTTCGTGCG
CTTCTGAGGAGGCTGCAATCTCCTCGGCTTCTGAGCCGCCCTTGGGCGGCTCATTCTCTTTGGGAAGGGAGTATGTCCCATCCTCATTCTTTCTGACAGA
TCCCCGGTCAGAGAGGCGTTTAGTTGCCGTGTAGTAGTAGTTGCGATGCATGGAATTGATGTCAAAACCGACGGTTGGCAGCAAATCCTTGATTTCGTCG
TTGGAAAGTGGCCCACCACCCATATCTTGAAGAACCCGAAGGATTGCATCCACCAAGGACATATCGGACCCGGCGTCCGAGCTCCTTGTTTTTTCAACAT
GGTGGGCCGCGTCATCAACATCAGTCAGGAGCACTTCCGCCGCAGCGATCTTGCGCTCAATGTGCGCGATTTGAGCGCGCAGCGAGGCAGCTTCCGCCCT
CCACGTTTCAACGGTCTTGTTTGTGAGGGTAATGCTCGACATGACAGCCCCGATTCGATTTTCCGACATGTATACAGTGCGGCACGTCATCGGTCAATCT
CACGTCAACATCATGATGTGCCAACGCCCATCAATCTCCACAGCTTGTACGGCCCCCACGGCCCGTGGTCTGTCGTAACGCCGCATTCCTCTATCAAGCC
CTGACGTGCGCATTCCTTGATGCACGCCCCGATCCGCTTGCGTAGCGTTGCCATGGTAGCATCGTCAGCAGTAAGCCCGCGATCCTCACACCATGCCTCG
GTGATCTGGCGGGACGTGAGGGGACCATCCGCCTCGCGCAGCATGTTCAACACGAACGCCTTGACGCTGCCCTTCTTGGCCCGGTGCTTGGTAACATATT
GCTTTATGGCGTACGTGTCGGCCTGTGGATCGAAGAGACGGATAGCCGCGTCCAGGTGGTCTATGTCCACCGTTAGCTTCTTGATCTGTTCGCGGTAACG
GTCGCGCAGCGCGGATAACTCAGCGTGCTTTGCGACCAAGCCCGCAACTGTGTTCGGGCGTTCATACTGAGGTTCGTTTTTCATGACCCCAGCATAGCTA
ACCATTTCAGGTTATTCAACTAACCATATTTGGTGAGTTTGCTCCATAATGCCG
Protein section
ORF number : 4

 

ORF 1
LengthBeginEndStrandFusion ORF
288 bp95 aa1039752-No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MNAIGKVERRAPPKPTARKGSPVNAEFEDRAKEFLRDAMRQQGVTIEQLTERLAAIGVEMSKGGVANKISRGGFSAAFLFQCTEALDLDVETSRR

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
960 bp319 aa11362095+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPQHFLLSPKAKTLSLVKIMRMSEEEARKAFQGLRWPETDGEPICPECGCVEHYDLKTRPVWKCKGCGKQFSATSGTTFHSRKLAIRDILAAIAVFINGA
KGYSALQLSRDLAVDYKTAFVLLHKVREAIENAREAGALKGDVEVDGAYFGGYVKPANERKDRKDRRKLENQTGKRQVVVVVRERGGRTVTSVGKTEAEG
VQLVARTVERGATVHADEASHWDRLAAAFPIKRINHKEAYSKDGACTNQAESFFSRLRRAEIGTHHHIAGAYLGAYAAEMAWREDNNRVANGYQFVMAAG
AAALGGKSERMCGYWQRRA

 

Blast result :
ORF 3
LengthBeginEndStrandFusion ORF
518 bp171 aa28692352-No
ORF function : Passenger Gene
Annotation : Chromosome segregation ATPasesDescription :

ORF sequence :

MSENRIGAVMSSITLTNKTVETWRAEAASLRAQIAHIERKIAAAEVLLTDVDDAAHHVEKTRSSDAGSDMSLVDAILRVLQDMGGGPLSNDEIKDLLPTV
GFDINSMHRNYYYTATKRLSDRGSVRKNEDGTYSLPKENEPPKGGSEAEEIAASSEAHEQGKDGDLLGYHS

 

Blast result :
ORF 4
LengthBeginEndStrandFusion ORF
495 bp164 aa34052911-No
ORF function : Passenger Gene
Annotation : Chromosome segregation ATPasesDescription :

ORF sequence :

MVSYAGVMKNEPQYERPNTVAGLVAKHAELSALRDRYREQIKKLTVDIDHLDAAIRLFDPQADTYAIKQYVTKHRAKKGSVKAFVLNMLREADGPLTSRQ
ITEAWCEDRGLTADDATMATLRKRIGACIKECARQGLIEECGVTTDHGPWGPYKLWRLMGVGTS

 

Blast result :
Comments
The second ORF is the transposase, others are passengers genes. ISSst2 is 76% aa similar to ISAzca1.
References
1] Moran,M.A., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2006) Direct submission GenBank.