ISSst2
- Family IS1595
- Group ISNha5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAYA01000001 | ND | Sagittula stellata | Sagittula stellata E-37 |
DNA section
IS Length : 3454 bp
Ends
IR Length : 34
IRL : CGGCATTATGGAGCAAACTCACCAAATATGGTTACATCACCATCAGAAAG
IRR : CGGCATTATGGAGCAAACTCACCAAATATGGTTAGTTGAATAACCTGAAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGGGCTTTTCTCT TATTTCTC | GGGAACTC CGGGAACTCGTC | 0 | |
CAGCACGGCGCGC GGGAACTC | TATTTCTC GGATGAGCCGGA | 0 |
DNA sequence
CGGCATTATGGAGCAAACTCACCAAATATGGTTACATCACCATCAGAAAGTTTTCCACTACACTAAGCTACTGGATTCACGAAATATTTCAAATCCATTC
CCAACATGTCCACAACTTTCACACAAGCCTTTGAACAGATTCAATAAGTGGACTCAGATACTTGCCTAAGTCGGCGCTTTGATTTCCAGCAAGAGAAAGG
GTACACCTTTAGGTATCAACTGCGACACGGTGATTACTCTGCCTGCCGTGGCGAGGTCTTAGGACTGAGGCAGTATGCGGGTTCTGGCAGGCCCGCCAGT
TGATGTAGCGGGCTGCGCTTTCGGGCGCGGTCCGCACTTACAAGTGCGCACGCAAGATTGGCCCTTGTCGCGACAGTTGACGGACTTGTTTTGCTTTAAT
CCGGTAGAACGAATCCACCCAAACTTCTGTGCCGTTTTTTGCTGACTTCAAAGCACACCTATAGTTTTTTCCATGGTCCGCGTAGTATCCGACAAGAACC
TGCCTTGGATTCTTCTCGACTTGGACCACCACACCGCTCGCGATAGCGAGCGGTAGCCAGAGCAAATCAAAGTCGGTTACGTCGGGGTGCTTCTCGGCAA
TGTGGCGCAAGCCAGATTGCCCCAAATACACCCAAGGGCAAGGCCAGGATAGTTGGCGCCAAACGGAATCTGGGAGCACGCCTACCTGCCTAGGCTGCCC
GTTCCTAACCTGCTGAACGTGCTCAAGAGTAAAAGTCATAAGGCGCGTAATTCATCGCCTGCTTGTCTCTACGTCAAGATCTAAAGCTTCCGTACACTGA
AACAAGAACGCCGCGCTAAACCCGCCTCGGCTTATCTTGTTCGCAACACCGCCCTTGCTCATCTCAACGCCTATCGCGGCCAACCTTTCGGTTAGCTGCT
CTATGGTTACGCCTTGCTGGCGCATAGCATCGCGCAAGAACTCCTTGGCCCGGTCTTCAAACTCTGCGTTGACAGGGCTGCCCTTCCTAGCGGTGGGCTT
CGGCGGCGCCCGCCGCTCGACCTTTCCGATTGCGTTCATATCTAGCCTCAATAATCACCGGATATGGTGATAATAACTGTTGACGGCCCGGTTGTCCAAT
GCGATAACGTAGTCACCATATAAGGTGATTCCCAGATGCCCCAGCACTTCCTCCTCTCTCCGAAAGCCAAGACCCTCTCGCTGGTCAAGATCATGCGCAT
GTCGGAAGAAGAGGCACGCAAGGCATTCCAAGGCCTGCGCTGGCCGGAAACTGATGGTGAGCCGATCTGCCCGGAATGTGGTTGCGTCGAGCATTACGAC
CTCAAGACCCGCCCTGTGTGGAAGTGCAAAGGCTGCGGCAAGCAGTTCAGCGCCACCAGCGGCACAACGTTTCACAGCCGCAAGCTGGCGATCCGCGACA
TTCTCGCCGCCATCGCCGTCTTCATAAACGGCGCTAAGGGCTACAGCGCCCTTCAACTGTCCCGCGATCTGGCCGTTGACTACAAGACTGCGTTTGTCCT
GCTGCACAAGGTTCGTGAAGCCATAGAGAACGCTCGCGAAGCTGGCGCCCTGAAAGGTGACGTTGAGGTTGATGGCGCCTACTTCGGTGGGTACGTGAAG
CCCGCCAACGAGCGCAAAGACCGCAAAGACCGTCGCAAGTTGGAGAACCAAACCGGCAAGCGCCAAGTTGTTGTCGTTGTCCGTGAGCGTGGCGGTCGCA
CTGTTACCAGCGTTGGCAAGACCGAAGCAGAGGGCGTGCAATTGGTTGCACGGACCGTCGAGCGCGGCGCAACGGTTCATGCTGATGAGGCGTCCCATTG
GGACCGTCTGGCAGCTGCGTTCCCGATAAAGCGCATCAACCACAAAGAGGCATACTCCAAGGACGGCGCCTGCACTAACCAAGCCGAGAGCTTCTTTAGC
CGCCTTCGCCGCGCTGAGATCGGCACGCATCACCATATTGCTGGCGCATACCTCGGTGCGTACGCTGCTGAAATGGCTTGGCGTGAGGACAACAACCGCG
TTGCCAATGGATATCAGTTTGTCATGGCGGCGGGTGCCGCAGCGCTTGGCGGGAAGTCCGAGCGGATGTGTGGATACTGGCAGCGACGCGCCTAATAGGA
TGGATTCTGGACAAGAATCTTGACCAAACCAACCAAGCCAGATAAAAGCACAGACATCGGCGAGGAGTGGAAACCGCGCCGATGCCTGCTCTGAAACCCC
TGTGGAGGGGATCAGGTTGGTAGAATGTCCCCCAACGGGGCTGCACCCGGATAGCCATGCTACGGCATCGCACACCGGCTGGAAGGGGTTATCCTCATGG
GTTCCCCCTATGATACTCCCGGCAACTTCCAGTGCCGGGTCTGGCCTGAGGGGTCAGGAATGATAGCCGAGCAGGTCCCCGTCTTTGCCCTGTTCGTGCG
CTTCTGAGGAGGCTGCAATCTCCTCGGCTTCTGAGCCGCCCTTGGGCGGCTCATTCTCTTTGGGAAGGGAGTATGTCCCATCCTCATTCTTTCTGACAGA
TCCCCGGTCAGAGAGGCGTTTAGTTGCCGTGTAGTAGTAGTTGCGATGCATGGAATTGATGTCAAAACCGACGGTTGGCAGCAAATCCTTGATTTCGTCG
TTGGAAAGTGGCCCACCACCCATATCTTGAAGAACCCGAAGGATTGCATCCACCAAGGACATATCGGACCCGGCGTCCGAGCTCCTTGTTTTTTCAACAT
GGTGGGCCGCGTCATCAACATCAGTCAGGAGCACTTCCGCCGCAGCGATCTTGCGCTCAATGTGCGCGATTTGAGCGCGCAGCGAGGCAGCTTCCGCCCT
CCACGTTTCAACGGTCTTGTTTGTGAGGGTAATGCTCGACATGACAGCCCCGATTCGATTTTCCGACATGTATACAGTGCGGCACGTCATCGGTCAATCT
CACGTCAACATCATGATGTGCCAACGCCCATCAATCTCCACAGCTTGTACGGCCCCCACGGCCCGTGGTCTGTCGTAACGCCGCATTCCTCTATCAAGCC
CTGACGTGCGCATTCCTTGATGCACGCCCCGATCCGCTTGCGTAGCGTTGCCATGGTAGCATCGTCAGCAGTAAGCCCGCGATCCTCACACCATGCCTCG
GTGATCTGGCGGGACGTGAGGGGACCATCCGCCTCGCGCAGCATGTTCAACACGAACGCCTTGACGCTGCCCTTCTTGGCCCGGTGCTTGGTAACATATT
GCTTTATGGCGTACGTGTCGGCCTGTGGATCGAAGAGACGGATAGCCGCGTCCAGGTGGTCTATGTCCACCGTTAGCTTCTTGATCTGTTCGCGGTAACG
GTCGCGCAGCGCGGATAACTCAGCGTGCTTTGCGACCAAGCCCGCAACTGTGTTCGGGCGTTCATACTGAGGTTCGTTTTTCATGACCCCAGCATAGCTA
ACCATTTCAGGTTATTCAACTAACCATATTTGGTGAGTTTGCTCCATAATGCCG
CCAACATGTCCACAACTTTCACACAAGCCTTTGAACAGATTCAATAAGTGGACTCAGATACTTGCCTAAGTCGGCGCTTTGATTTCCAGCAAGAGAAAGG
GTACACCTTTAGGTATCAACTGCGACACGGTGATTACTCTGCCTGCCGTGGCGAGGTCTTAGGACTGAGGCAGTATGCGGGTTCTGGCAGGCCCGCCAGT
TGATGTAGCGGGCTGCGCTTTCGGGCGCGGTCCGCACTTACAAGTGCGCACGCAAGATTGGCCCTTGTCGCGACAGTTGACGGACTTGTTTTGCTTTAAT
CCGGTAGAACGAATCCACCCAAACTTCTGTGCCGTTTTTTGCTGACTTCAAAGCACACCTATAGTTTTTTCCATGGTCCGCGTAGTATCCGACAAGAACC
TGCCTTGGATTCTTCTCGACTTGGACCACCACACCGCTCGCGATAGCGAGCGGTAGCCAGAGCAAATCAAAGTCGGTTACGTCGGGGTGCTTCTCGGCAA
TGTGGCGCAAGCCAGATTGCCCCAAATACACCCAAGGGCAAGGCCAGGATAGTTGGCGCCAAACGGAATCTGGGAGCACGCCTACCTGCCTAGGCTGCCC
GTTCCTAACCTGCTGAACGTGCTCAAGAGTAAAAGTCATAAGGCGCGTAATTCATCGCCTGCTTGTCTCTACGTCAAGATCTAAAGCTTCCGTACACTGA
AACAAGAACGCCGCGCTAAACCCGCCTCGGCTTATCTTGTTCGCAACACCGCCCTTGCTCATCTCAACGCCTATCGCGGCCAACCTTTCGGTTAGCTGCT
CTATGGTTACGCCTTGCTGGCGCATAGCATCGCGCAAGAACTCCTTGGCCCGGTCTTCAAACTCTGCGTTGACAGGGCTGCCCTTCCTAGCGGTGGGCTT
CGGCGGCGCCCGCCGCTCGACCTTTCCGATTGCGTTCATATCTAGCCTCAATAATCACCGGATATGGTGATAATAACTGTTGACGGCCCGGTTGTCCAAT
GCGATAACGTAGTCACCATATAAGGTGATTCCCAGATGCCCCAGCACTTCCTCCTCTCTCCGAAAGCCAAGACCCTCTCGCTGGTCAAGATCATGCGCAT
GTCGGAAGAAGAGGCACGCAAGGCATTCCAAGGCCTGCGCTGGCCGGAAACTGATGGTGAGCCGATCTGCCCGGAATGTGGTTGCGTCGAGCATTACGAC
CTCAAGACCCGCCCTGTGTGGAAGTGCAAAGGCTGCGGCAAGCAGTTCAGCGCCACCAGCGGCACAACGTTTCACAGCCGCAAGCTGGCGATCCGCGACA
TTCTCGCCGCCATCGCCGTCTTCATAAACGGCGCTAAGGGCTACAGCGCCCTTCAACTGTCCCGCGATCTGGCCGTTGACTACAAGACTGCGTTTGTCCT
GCTGCACAAGGTTCGTGAAGCCATAGAGAACGCTCGCGAAGCTGGCGCCCTGAAAGGTGACGTTGAGGTTGATGGCGCCTACTTCGGTGGGTACGTGAAG
CCCGCCAACGAGCGCAAAGACCGCAAAGACCGTCGCAAGTTGGAGAACCAAACCGGCAAGCGCCAAGTTGTTGTCGTTGTCCGTGAGCGTGGCGGTCGCA
CTGTTACCAGCGTTGGCAAGACCGAAGCAGAGGGCGTGCAATTGGTTGCACGGACCGTCGAGCGCGGCGCAACGGTTCATGCTGATGAGGCGTCCCATTG
GGACCGTCTGGCAGCTGCGTTCCCGATAAAGCGCATCAACCACAAAGAGGCATACTCCAAGGACGGCGCCTGCACTAACCAAGCCGAGAGCTTCTTTAGC
CGCCTTCGCCGCGCTGAGATCGGCACGCATCACCATATTGCTGGCGCATACCTCGGTGCGTACGCTGCTGAAATGGCTTGGCGTGAGGACAACAACCGCG
TTGCCAATGGATATCAGTTTGTCATGGCGGCGGGTGCCGCAGCGCTTGGCGGGAAGTCCGAGCGGATGTGTGGATACTGGCAGCGACGCGCCTAATAGGA
TGGATTCTGGACAAGAATCTTGACCAAACCAACCAAGCCAGATAAAAGCACAGACATCGGCGAGGAGTGGAAACCGCGCCGATGCCTGCTCTGAAACCCC
TGTGGAGGGGATCAGGTTGGTAGAATGTCCCCCAACGGGGCTGCACCCGGATAGCCATGCTACGGCATCGCACACCGGCTGGAAGGGGTTATCCTCATGG
GTTCCCCCTATGATACTCCCGGCAACTTCCAGTGCCGGGTCTGGCCTGAGGGGTCAGGAATGATAGCCGAGCAGGTCCCCGTCTTTGCCCTGTTCGTGCG
CTTCTGAGGAGGCTGCAATCTCCTCGGCTTCTGAGCCGCCCTTGGGCGGCTCATTCTCTTTGGGAAGGGAGTATGTCCCATCCTCATTCTTTCTGACAGA
TCCCCGGTCAGAGAGGCGTTTAGTTGCCGTGTAGTAGTAGTTGCGATGCATGGAATTGATGTCAAAACCGACGGTTGGCAGCAAATCCTTGATTTCGTCG
TTGGAAAGTGGCCCACCACCCATATCTTGAAGAACCCGAAGGATTGCATCCACCAAGGACATATCGGACCCGGCGTCCGAGCTCCTTGTTTTTTCAACAT
GGTGGGCCGCGTCATCAACATCAGTCAGGAGCACTTCCGCCGCAGCGATCTTGCGCTCAATGTGCGCGATTTGAGCGCGCAGCGAGGCAGCTTCCGCCCT
CCACGTTTCAACGGTCTTGTTTGTGAGGGTAATGCTCGACATGACAGCCCCGATTCGATTTTCCGACATGTATACAGTGCGGCACGTCATCGGTCAATCT
CACGTCAACATCATGATGTGCCAACGCCCATCAATCTCCACAGCTTGTACGGCCCCCACGGCCCGTGGTCTGTCGTAACGCCGCATTCCTCTATCAAGCC
CTGACGTGCGCATTCCTTGATGCACGCCCCGATCCGCTTGCGTAGCGTTGCCATGGTAGCATCGTCAGCAGTAAGCCCGCGATCCTCACACCATGCCTCG
GTGATCTGGCGGGACGTGAGGGGACCATCCGCCTCGCGCAGCATGTTCAACACGAACGCCTTGACGCTGCCCTTCTTGGCCCGGTGCTTGGTAACATATT
GCTTTATGGCGTACGTGTCGGCCTGTGGATCGAAGAGACGGATAGCCGCGTCCAGGTGGTCTATGTCCACCGTTAGCTTCTTGATCTGTTCGCGGTAACG
GTCGCGCAGCGCGGATAACTCAGCGTGCTTTGCGACCAAGCCCGCAACTGTGTTCGGGCGTTCATACTGAGGTTCGTTTTTCATGACCCCAGCATAGCTA
ACCATTTCAGGTTATTCAACTAACCATATTTGGTGAGTTTGCTCCATAATGCCG
Protein section
ORF number : 4
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
288 bp | 95 aa | 1039 | 752 | - | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MNAIGKVERRAPPKPTARKGSPVNAEFEDRAKEFLRDAMRQQGVTIEQLTERLAAIGVEMSKGGVANKISRGGFSAAFLFQCTEALDLDVETSRR
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
960 bp | 319 aa | 1136 | 2095 | + | No |
Chemistry : DDE
ORF sequence :
MPQHFLLSPKAKTLSLVKIMRMSEEEARKAFQGLRWPETDGEPICPECGCVEHYDLKTRPVWKCKGCGKQFSATSGTTFHSRKLAIRDILAAIAVFINGA
KGYSALQLSRDLAVDYKTAFVLLHKVREAIENAREAGALKGDVEVDGAYFGGYVKPANERKDRKDRRKLENQTGKRQVVVVVRERGGRTVTSVGKTEAEG
VQLVARTVERGATVHADEASHWDRLAAAFPIKRINHKEAYSKDGACTNQAESFFSRLRRAEIGTHHHIAGAYLGAYAAEMAWREDNNRVANGYQFVMAAG
AAALGGKSERMCGYWQRRA
KGYSALQLSRDLAVDYKTAFVLLHKVREAIENAREAGALKGDVEVDGAYFGGYVKPANERKDRKDRRKLENQTGKRQVVVVVRERGGRTVTSVGKTEAEG
VQLVARTVERGATVHADEASHWDRLAAAFPIKRINHKEAYSKDGACTNQAESFFSRLRRAEIGTHHHIAGAYLGAYAAEMAWREDNNRVANGYQFVMAAG
AAALGGKSERMCGYWQRRA
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
518 bp | 171 aa | 2869 | 2352 | - | No |
Annotation : Chromosome segregation ATPasesDescription :
ORF sequence :
MSENRIGAVMSSITLTNKTVETWRAEAASLRAQIAHIERKIAAAEVLLTDVDDAAHHVEKTRSSDAGSDMSLVDAILRVLQDMGGGPLSNDEIKDLLPTV
GFDINSMHRNYYYTATKRLSDRGSVRKNEDGTYSLPKENEPPKGGSEAEEIAASSEAHEQGKDGDLLGYHS
GFDINSMHRNYYYTATKRLSDRGSVRKNEDGTYSLPKENEPPKGGSEAEEIAASSEAHEQGKDGDLLGYHS
Blast result :ORF 4
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
495 bp | 164 aa | 3405 | 2911 | - | No |
Annotation : Chromosome segregation ATPasesDescription :
ORF sequence :
MVSYAGVMKNEPQYERPNTVAGLVAKHAELSALRDRYREQIKKLTVDIDHLDAAIRLFDPQADTYAIKQYVTKHRAKKGSVKAFVLNMLREADGPLTSRQ
ITEAWCEDRGLTADDATMATLRKRIGACIKECARQGLIEECGVTTDHGPWGPYKLWRLMGVGTS
ITEAWCEDRGLTADDATMATLRKRIGACIKECARQGLIEECGVTTDHGPWGPYKLWRLMGVGTS
Blast result :
Comments
The second ORF is the transposase, others are passengers genes. ISSst2 is 76% aa similar to ISAzca1.
References
1] Moran,M.A., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2006) Direct submission GenBank.