ISGka5
- Family IS66
- Group ISBst12
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_006510 | ND | Geobacillus kaustophilus | Geobacillus kaustophilus HTA426 |
DNA section
IS Length : 1610 bp
Ends
IR Length : 18/27
IRL : GTAACTATTCAGCCACATCATAAAGTGAGCTGAATATTTTCTTCTTTCCT
IRR : GTAACTATTCACTCCGATAGTAGTATGTAAAGAAGCGCAACACAAATAGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCCTTTATGC | CTAATTTTTA | 0 |
DNA sequence
GTAACTATTCAGCCACATCATAAAGTGAGCTGAATATTTTCTTCTTTCCTTGTCTATGATGTGAATACTGATAGACAAGGAGGTGAATCGCATGTTTACG
GTACAACAAGCTGTATTTACAGTTGAGAGCTTAATCGGCAAAGTTCAACAACAAAAACAGCTCATTCATCAACTCGTTCAAGAAAATGAACATTTGCGTC
ACGAAAACAAACAACTACGCAAAGAAAATGAACAACTGAAGTACCGTGTTCAAGAGCTGGAAGCACGCACGAAAAAAAACAGCTCCAATAGCCATTTGCC
CCCATCTTCTGACCGTTTTCACACCCATTCTTCTCGCAAGCCATCTGGCAACAAGCCAGGCGGACAAGAAGGACATCAAGGAACGACGCTCCGTCAAGTG
GAACATCCACATCATCGTGTCGTCCACCGTGTGCATACGTGTCAAGGATGTGGGGCTTCTTTGCGTGAAGTCAAACCGTTCAAAGTCGATATCCGTCAAG
TGTTTGATCTTCCTCCTGTGACGATCGAGGTGACACAACATGAACGTGAAGTGAAATCGTGTCCACATTGTCGATGTGTTCAACAAGCCGAATTCCCATC
CCACGTCACGAATCATGTGCAATACGGTCCACGGCTCACGGCGCTCGTTGTTTATTTACATCATATCCAATTGATCCCGTACAAGCGTTTAAGTGATACA
ATCGAAGCGTTATATCAACACTCGATTAGTACGGGAACTCTTGCCAATATGGTGAAACGAGGACGCGAAGCGCTGGAATCAAATATGGACGTCATCGAAG
ACGCCTTACTTGAATCCAACATCCTGCATGTCGATGAAACGAGTTTGCGCATCAAGGGGAAACTCGCATGGGTGCATGTCGCGTGCACATCGAAATATAC
GTACTTGGCTCCTCACGCTTCTCGTGGAAAAAAAGCGACCGATGACATCGGGATTCTTCCCCGATATCAAGGAACGATGATGCACGATGGGTTCGGTACG
TATCCAAAATACACGCAAGCCACCCATGCCCTTTGTCACGCCCATCATTTGCGTGAATTGAAGGGTTTCATCGAACAAGGGCATACATGGGCATCGCGCA
TGACCACGTTTCTGTTAGCCGCCAAACAGGCCGTCGAAGCTCATCACGGTGCACTTTCCGAAAAAGAAGCGAAACGGTGGGAACGAGTGTATGATCGCAT
CCTAGCGAAAGCACAGCACCGATTAGAAACGATGACGCCTCTTCCGAAAAAAGCACTCGCTTTTGTTCGACGGCTTCAGAAACGAAAGGAAGAAGCGCTA
CGTTTCTTACGCGAAGCTCACGTTCCCTTTGACAACAACCAAGCCGAACGCGATCTTCGTATGGTCAAAGTCAAAGAGAACATTTCGGGTACGTTCCGCG
AAGAAACATTCGCCCAGTCGTTTTGCATCACAAGAAGCATCGTTTCCACACTGACGAAACACGAAAAAAACGTGTGGGACTCGTTATGTCTTCTGTTGAC
AGGCGAAACGCTCGATCGTGTTCTTTCTACCACTTAGGGCATTTTCTATTACGGGGATGCCCTATTTGTGTTGCGCTTCTTTACATACTACTATCGGAGT
GAATAGTTAC
GTACAACAAGCTGTATTTACAGTTGAGAGCTTAATCGGCAAAGTTCAACAACAAAAACAGCTCATTCATCAACTCGTTCAAGAAAATGAACATTTGCGTC
ACGAAAACAAACAACTACGCAAAGAAAATGAACAACTGAAGTACCGTGTTCAAGAGCTGGAAGCACGCACGAAAAAAAACAGCTCCAATAGCCATTTGCC
CCCATCTTCTGACCGTTTTCACACCCATTCTTCTCGCAAGCCATCTGGCAACAAGCCAGGCGGACAAGAAGGACATCAAGGAACGACGCTCCGTCAAGTG
GAACATCCACATCATCGTGTCGTCCACCGTGTGCATACGTGTCAAGGATGTGGGGCTTCTTTGCGTGAAGTCAAACCGTTCAAAGTCGATATCCGTCAAG
TGTTTGATCTTCCTCCTGTGACGATCGAGGTGACACAACATGAACGTGAAGTGAAATCGTGTCCACATTGTCGATGTGTTCAACAAGCCGAATTCCCATC
CCACGTCACGAATCATGTGCAATACGGTCCACGGCTCACGGCGCTCGTTGTTTATTTACATCATATCCAATTGATCCCGTACAAGCGTTTAAGTGATACA
ATCGAAGCGTTATATCAACACTCGATTAGTACGGGAACTCTTGCCAATATGGTGAAACGAGGACGCGAAGCGCTGGAATCAAATATGGACGTCATCGAAG
ACGCCTTACTTGAATCCAACATCCTGCATGTCGATGAAACGAGTTTGCGCATCAAGGGGAAACTCGCATGGGTGCATGTCGCGTGCACATCGAAATATAC
GTACTTGGCTCCTCACGCTTCTCGTGGAAAAAAAGCGACCGATGACATCGGGATTCTTCCCCGATATCAAGGAACGATGATGCACGATGGGTTCGGTACG
TATCCAAAATACACGCAAGCCACCCATGCCCTTTGTCACGCCCATCATTTGCGTGAATTGAAGGGTTTCATCGAACAAGGGCATACATGGGCATCGCGCA
TGACCACGTTTCTGTTAGCCGCCAAACAGGCCGTCGAAGCTCATCACGGTGCACTTTCCGAAAAAGAAGCGAAACGGTGGGAACGAGTGTATGATCGCAT
CCTAGCGAAAGCACAGCACCGATTAGAAACGATGACGCCTCTTCCGAAAAAAGCACTCGCTTTTGTTCGACGGCTTCAGAAACGAAAGGAAGAAGCGCTA
CGTTTCTTACGCGAAGCTCACGTTCCCTTTGACAACAACCAAGCCGAACGCGATCTTCGTATGGTCAAAGTCAAAGAGAACATTTCGGGTACGTTCCGCG
AAGAAACATTCGCCCAGTCGTTTTGCATCACAAGAAGCATCGTTTCCACACTGACGAAACACGAAAAAAACGTGTGGGACTCGTTATGTCTTCTGTTGAC
AGGCGAAACGCTCGATCGTGTTCTTTCTACCACTTAGGGCATTTTCTATTACGGGGATGCCCTATTTGTGTTGCGCTTCTTTACATACTACTATCGGAGT
GAATAGTTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1446 bp | 481 aa | 92 | 1537 | + | No |
Chemistry : DDE
ORF sequence :
MFTVQQAVFTVESLIGKVQQQKQLIHQLVQENEHLRHENKQLRKENEQLKYRVQELEARTKKNSSNSHLPPSSDRFHTHSSRKPSGNKPGGQEGHQGTTL
RQVEHPHHRVVHRVHTCQGCGASLREVKPFKVDIRQVFDLPPVTIEVTQHEREVKSCPHCRCVQQAEFPSHVTNHVQYGPRLTALVVYLHHIQLIPYKRL
SDTIEALYQHSISTGTLANMVKRGREALESNMDVIEDALLESNILHVDETSLRIKGKLAWVHVACTSKYTYLAPHASRGKKATDDIGILPRYQGTMMHDG
FGTYPKYTQATHALCHAHHLRELKGFIEQGHTWASRMTTFLLAAKQAVEAHHGALSEKEAKRWERVYDRILAKAQHRLETMTPLPKKALAFVRRLQKRKE
EALRFLREAHVPFDNNQAERDLRMVKVKENISGTFREETFAQSFCITRSIVSTLTKHEKNVWDSLCLLLTGETLDRVLSTT
RQVEHPHHRVVHRVHTCQGCGASLREVKPFKVDIRQVFDLPPVTIEVTQHEREVKSCPHCRCVQQAEFPSHVTNHVQYGPRLTALVVYLHHIQLIPYKRL
SDTIEALYQHSISTGTLANMVKRGREALESNMDVIEDALLESNILHVDETSLRIKGKLAWVHVACTSKYTYLAPHASRGKKATDDIGILPRYQGTMMHDG
FGTYPKYTQATHALCHAHHLRELKGFIEQGHTWASRMTTFLLAAKQAVEAHHGALSEKEAKRWERVYDRILAKAQHRLETMTPLPKKALAFVRRLQKRKE
EALRFLREAHVPFDNNQAERDLRMVKVKENISGTFREETFAQSFCITRSIVSTLTKHEKNVWDSLCLLLTGETLDRVLSTT
Blast result :
Comments
ISGka5 is 96% aa similar to ISBst12.
References
1] Takami,H., Takaki,Y., Chee,G.J., Nishi,S., Shimamura,S., Suzuki,H., Matsui,S. and Uchiyama,I. (2004) Nucleic Acids Res. 32 (21), 6292-6303.
2] Takami,H., Takaki,Y. and Chee,G. (2003) Direct Submission GenBank.
3] ISfinder annotation (2008).
2] Takami,H., Takaki,Y. and Chee,G. (2003) Direct Submission GenBank.
3] ISfinder annotation (2008).