ISGka5

  • Family IS66
  • Group ISBst12
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_006510 ND Geobacillus kaustophilus
Geobacillus kaustophilus HTA426
DNA section
IS Length : 1610 bp

Ends


IR Length : 18/27

IRL : GTAACTATTCAGCCACATCATAAAGTGAGCTGAATATTTTCTTCTTTCCT
IRR : GTAACTATTCACTCCGATAGTAGTATGTAAAGAAGCGCAACACAAATAGG

Insertion site


Left flankDirect repeatRight flankDR Length
TCCTTTATGCCTAATTTTTA0

DNA sequence

GTAACTATTCAGCCACATCATAAAGTGAGCTGAATATTTTCTTCTTTCCTTGTCTATGATGTGAATACTGATAGACAAGGAGGTGAATCGCATGTTTACG
GTACAACAAGCTGTATTTACAGTTGAGAGCTTAATCGGCAAAGTTCAACAACAAAAACAGCTCATTCATCAACTCGTTCAAGAAAATGAACATTTGCGTC
ACGAAAACAAACAACTACGCAAAGAAAATGAACAACTGAAGTACCGTGTTCAAGAGCTGGAAGCACGCACGAAAAAAAACAGCTCCAATAGCCATTTGCC
CCCATCTTCTGACCGTTTTCACACCCATTCTTCTCGCAAGCCATCTGGCAACAAGCCAGGCGGACAAGAAGGACATCAAGGAACGACGCTCCGTCAAGTG
GAACATCCACATCATCGTGTCGTCCACCGTGTGCATACGTGTCAAGGATGTGGGGCTTCTTTGCGTGAAGTCAAACCGTTCAAAGTCGATATCCGTCAAG
TGTTTGATCTTCCTCCTGTGACGATCGAGGTGACACAACATGAACGTGAAGTGAAATCGTGTCCACATTGTCGATGTGTTCAACAAGCCGAATTCCCATC
CCACGTCACGAATCATGTGCAATACGGTCCACGGCTCACGGCGCTCGTTGTTTATTTACATCATATCCAATTGATCCCGTACAAGCGTTTAAGTGATACA
ATCGAAGCGTTATATCAACACTCGATTAGTACGGGAACTCTTGCCAATATGGTGAAACGAGGACGCGAAGCGCTGGAATCAAATATGGACGTCATCGAAG
ACGCCTTACTTGAATCCAACATCCTGCATGTCGATGAAACGAGTTTGCGCATCAAGGGGAAACTCGCATGGGTGCATGTCGCGTGCACATCGAAATATAC
GTACTTGGCTCCTCACGCTTCTCGTGGAAAAAAAGCGACCGATGACATCGGGATTCTTCCCCGATATCAAGGAACGATGATGCACGATGGGTTCGGTACG
TATCCAAAATACACGCAAGCCACCCATGCCCTTTGTCACGCCCATCATTTGCGTGAATTGAAGGGTTTCATCGAACAAGGGCATACATGGGCATCGCGCA
TGACCACGTTTCTGTTAGCCGCCAAACAGGCCGTCGAAGCTCATCACGGTGCACTTTCCGAAAAAGAAGCGAAACGGTGGGAACGAGTGTATGATCGCAT
CCTAGCGAAAGCACAGCACCGATTAGAAACGATGACGCCTCTTCCGAAAAAAGCACTCGCTTTTGTTCGACGGCTTCAGAAACGAAAGGAAGAAGCGCTA
CGTTTCTTACGCGAAGCTCACGTTCCCTTTGACAACAACCAAGCCGAACGCGATCTTCGTATGGTCAAAGTCAAAGAGAACATTTCGGGTACGTTCCGCG
AAGAAACATTCGCCCAGTCGTTTTGCATCACAAGAAGCATCGTTTCCACACTGACGAAACACGAAAAAAACGTGTGGGACTCGTTATGTCTTCTGTTGAC
AGGCGAAACGCTCGATCGTGTTCTTTCTACCACTTAGGGCATTTTCTATTACGGGGATGCCCTATTTGTGTTGCGCTTCTTTACATACTACTATCGGAGT
GAATAGTTAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1446 bp481 aa921537+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MFTVQQAVFTVESLIGKVQQQKQLIHQLVQENEHLRHENKQLRKENEQLKYRVQELEARTKKNSSNSHLPPSSDRFHTHSSRKPSGNKPGGQEGHQGTTL
RQVEHPHHRVVHRVHTCQGCGASLREVKPFKVDIRQVFDLPPVTIEVTQHEREVKSCPHCRCVQQAEFPSHVTNHVQYGPRLTALVVYLHHIQLIPYKRL
SDTIEALYQHSISTGTLANMVKRGREALESNMDVIEDALLESNILHVDETSLRIKGKLAWVHVACTSKYTYLAPHASRGKKATDDIGILPRYQGTMMHDG
FGTYPKYTQATHALCHAHHLRELKGFIEQGHTWASRMTTFLLAAKQAVEAHHGALSEKEAKRWERVYDRILAKAQHRLETMTPLPKKALAFVRRLQKRKE
EALRFLREAHVPFDNNQAERDLRMVKVKENISGTFREETFAQSFCITRSIVSTLTKHEKNVWDSLCLLLTGETLDRVLSTT

 

Blast result :
Comments
ISGka5 is 96% aa similar to ISBst12.
References
1] Takami,H., Takaki,Y., Chee,G.J., Nishi,S., Shimamura,S., Suzuki,H., Matsui,S. and Uchiyama,I. (2004) Nucleic Acids Res. 32 (21), 6292-6303.

2] Takami,H., Takaki,Y. and Chee,G. (2003) Direct Submission GenBank.

3] ISfinder annotation (2008).