ISArch14
- Family IS66
- Group ISBst12
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| AY714829 | ND | uncultured archaeon | uncultured archaeon GZfos19A5 |
DNA section
IS Length : 1560 bp
Ends
IR Length : 19/23
IRL : GTAACTACTCACCCCCTCGACCACAAAATTTATTATTAATAAGATTATAT
IRR : GTAACTACTCACCTACACAACCAACCGATGGAACAAACGGATCCCCTCTA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AGATATTGAG | CAATTACA | AACAGTCTAA | 8 |
DNA sequence
GTAACTACTCACCCCCTCGACCACAAAATTTATTATTAATAAGATTATATTATCCATTGCAATCGTTGCAAATAAAATATTTCGTTTGATGGATGGAGAA
CGCGATGCACACACCCAACCGTGATGAAATTCATGCTGCTTACCAGCAAGGGGAAGAAGTAATCGTTCAACTATTTGATCAGTTTATTCATGAATTACAA
ACCCTGCAGGATCAGCTGCAAGCCCTGCAAGACCAACTGAACAAAAACAGTAAAAACAGCAGCAAGCCCCCTTCCAGCGATGGTCTCAAGAAGCCCCGCA
CCAGAAGCCAGAGGAAACCGGGCAACAGAAAGAACGGCGGGCAGGAGGGGCATGTTGGTCACACCCTAGAACCGGTGGAAGAACCGGATCACATAGAAGT
GCACGAGGTCGAGCAATGCACCGAGTGCGGTGCAACACTCACCGATGTCGAAGCGGAGGACTGCCAGAGACGGCAGGTCTTTGACATTCCGCCCATACAA
ATCGAAGTGACCGAACATCAAGCAGAGATCAAGACGTGTCCCCATTGCGGGCACACGAACATGGCTTCATTTCCACCAGATGTCACCGCATCGGTGCAAT
ACGGTAGCCGCATCAGATCGATGGCGATCTACATAAACAATTACCAGTTTGTCCCGCTGGAGCGTATCAGCGACTTTTTCGAGGATATTTTTGGTCATCG
TCCTTCTGAAGCGATCATCCTTCAGGCAAATGCGACCTGTGCAGAGAACGTAAAACCAGCCAATGATGCGATTAAAGAGCAGTTGACAAACGCTCATGTA
GTTAATTTCGATGAAACCGGTTTGCGAGTGGAGGGTAAGCTGAACTGGCTGCATGTTGCCAGCACTCACGATTTGACGTATTATACTGTGCATCCGAAGC
GTGGTAAGGAGGCGATGGACGCGATGGGGATTTTATCAGAATTCGGAGGAGTTGCTGTGCACGATCACTGGAGCCCCTATTTCAATTACACTGACGTAAT
ACACGGGCTTTGCAACGCCCATCACCTGAGAGACCTTACATTTATTCACGAACAGTATGAGCAGGACTGGGCAGAAGAAATGAGCCAATGCTTGCTTGAT
ATCAAGAAAGAGGTGGATCAAGCTAGCCTGTATAAGGATCAACTTGATTCTGAGGAGATCGAGGAGTTTGAAGTGCGTTATGATGAGATTATTGCGGAGG
GACTGGAACTAAACCCACCACCTCCGAAAGAACATGGAAAACGGGGCAGGATCAAACAATCTCCGCCCAAAAATCTACTTGACAGGTTATCGGAACACAA
ACAGGAAGTACTGGCATTTATGTACGACTTTGATGTGCCGTTTGACAATAACCAGGCTGAGCGGGACGTACGCATGATGAAACTGAGGCAGAAGATATCA
GGCACCTTCCGGACTGCTGTGGGGGCAGATATATTTTGCAACATTCGCGGGTATATATCCACAGCGCGGAAGAACGGGTATCATGTGCTCGATGCGATTC
AGGATGCGCTTAGAGGGGATCCGTTTGTTCCATCGGTTGGTTGTGTAGGTGAGTAGTTAC
CGCGATGCACACACCCAACCGTGATGAAATTCATGCTGCTTACCAGCAAGGGGAAGAAGTAATCGTTCAACTATTTGATCAGTTTATTCATGAATTACAA
ACCCTGCAGGATCAGCTGCAAGCCCTGCAAGACCAACTGAACAAAAACAGTAAAAACAGCAGCAAGCCCCCTTCCAGCGATGGTCTCAAGAAGCCCCGCA
CCAGAAGCCAGAGGAAACCGGGCAACAGAAAGAACGGCGGGCAGGAGGGGCATGTTGGTCACACCCTAGAACCGGTGGAAGAACCGGATCACATAGAAGT
GCACGAGGTCGAGCAATGCACCGAGTGCGGTGCAACACTCACCGATGTCGAAGCGGAGGACTGCCAGAGACGGCAGGTCTTTGACATTCCGCCCATACAA
ATCGAAGTGACCGAACATCAAGCAGAGATCAAGACGTGTCCCCATTGCGGGCACACGAACATGGCTTCATTTCCACCAGATGTCACCGCATCGGTGCAAT
ACGGTAGCCGCATCAGATCGATGGCGATCTACATAAACAATTACCAGTTTGTCCCGCTGGAGCGTATCAGCGACTTTTTCGAGGATATTTTTGGTCATCG
TCCTTCTGAAGCGATCATCCTTCAGGCAAATGCGACCTGTGCAGAGAACGTAAAACCAGCCAATGATGCGATTAAAGAGCAGTTGACAAACGCTCATGTA
GTTAATTTCGATGAAACCGGTTTGCGAGTGGAGGGTAAGCTGAACTGGCTGCATGTTGCCAGCACTCACGATTTGACGTATTATACTGTGCATCCGAAGC
GTGGTAAGGAGGCGATGGACGCGATGGGGATTTTATCAGAATTCGGAGGAGTTGCTGTGCACGATCACTGGAGCCCCTATTTCAATTACACTGACGTAAT
ACACGGGCTTTGCAACGCCCATCACCTGAGAGACCTTACATTTATTCACGAACAGTATGAGCAGGACTGGGCAGAAGAAATGAGCCAATGCTTGCTTGAT
ATCAAGAAAGAGGTGGATCAAGCTAGCCTGTATAAGGATCAACTTGATTCTGAGGAGATCGAGGAGTTTGAAGTGCGTTATGATGAGATTATTGCGGAGG
GACTGGAACTAAACCCACCACCTCCGAAAGAACATGGAAAACGGGGCAGGATCAAACAATCTCCGCCCAAAAATCTACTTGACAGGTTATCGGAACACAA
ACAGGAAGTACTGGCATTTATGTACGACTTTGATGTGCCGTTTGACAATAACCAGGCTGAGCGGGACGTACGCATGATGAAACTGAGGCAGAAGATATCA
GGCACCTTCCGGACTGCTGTGGGGGCAGATATATTTTGCAACATTCGCGGGTATATATCCACAGCGCGGAAGAACGGGTATCATGTGCTCGATGCGATTC
AGGATGCGCTTAGAGGGGATCCGTTTGTTCCATCGGTTGGTTGTGTAGGTGAGTAGTTAC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1464 bp | 487 aa | 93 | 1556 | + | No |
Chemistry : DDE
ORF sequence :
MENAMHTPNRDEIHAAYQQGEEVIVQLFDQFIHELQTLQDQLQALQDQLNKNSKNSSKPPSSDGLKKPRTRSQRKPGNRKNGGQEGHVGHTLEPVEEPDH
IEVHEVEQCTECGATLTDVEAEDCQRRQVFDIPPIQIEVTEHQAEIKTCPHCGHTNMASFPPDVTASVQYGSRIRSMAIYINNYQFVPLERISDFFEDIF
GHRPSEAIILQANATCAENVKPANDAIKEQLTNAHVVNFDETGLRVEGKLNWLHVASTHDLTYYTVHPKRGKEAMDAMGILSEFGGVAVHDHWSPYFNYT
DVIHGLCNAHHLRDLTFIHEQYEQDWAEEMSQCLLDIKKEVDQASLYKDQLDSEEIEEFEVRYDEIIAEGLELNPPPPKEHGKRGRIKQSPPKNLLDRLS
EHKQEVLAFMYDFDVPFDNNQAERDVRMMKLRQKISGTFRTAVGADIFCNIRGYISTARKNGYHVLDAIQDALRGDPFVPSVGCVGE
IEVHEVEQCTECGATLTDVEAEDCQRRQVFDIPPIQIEVTEHQAEIKTCPHCGHTNMASFPPDVTASVQYGSRIRSMAIYINNYQFVPLERISDFFEDIF
GHRPSEAIILQANATCAENVKPANDAIKEQLTNAHVVNFDETGLRVEGKLNWLHVASTHDLTYYTVHPKRGKEAMDAMGILSEFGGVAVHDHWSPYFNYT
DVIHGLCNAHHLRDLTFIHEQYEQDWAEEMSQCLLDIKKEVDQASLYKDQLDSEEIEEFEVRYDEIIAEGLELNPPPPKEHGKRGRIKQSPPKNLLDRLS
EHKQEVLAFMYDFDVPFDNNQAERDVRMMKLRQKISGTFRTAVGADIFCNIRGYISTARKNGYHVLDAIQDALRGDPFVPSVGCVGE
Blast result :
Comments
ISArch14 is 67% aa similar to ISMma14.
References
1] Hallam,S.J., Putnam,N., Preston,C.M., Detter,J.C., Rokhsar,D., Richardson,P.M. and DeLong,E.F. (2004) Science 305 (5689), 1457-1462.
2] Hallam,S.J., Preston,C.M. and DeLong,E.F.(2004) Direct Submission GenBank.
3] Putnam,N., Detter,J.C., Richardson,P.M. and Rokhsar,D. (2004) Direct Submission GenBank.
4] ISfinder annotation (2008).
2] Hallam,S.J., Preston,C.M. and DeLong,E.F.(2004) Direct Submission GenBank.
3] Putnam,N., Detter,J.C., Richardson,P.M. and Rokhsar,D. (2004) Direct Submission GenBank.
4] ISfinder annotation (2008).