ISUnCu4

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008055 ND Plasmid QKH54
Plasmid QKH54
DNA section
IS Length : 1113 bp

Ends


IR Length : 22/27

IRL : GGCGGCGGCAAAAACTGAGTGCAACACCTGACCTTTCCGGTACGGTGCTG
IRR : GGCGGTTGCAGGAGCTGAGTGCAACACGGTCATTGAATTGAAGCTGGAGC

Insertion site


Left flankDirect repeatRight flankDR Length
TTAAACAAAGGAGATTCAAATGG3

DNA sequence

GGCGGCGGCAAAAACTGAGTGCAACACCTGACCTTTCCGGTACGGTGCTGCCCCTATGTCTTATACCGAACTCAGCGTTGAAGAGCGCGCCACCATTCAA
ATCAGTCATGTCCAAGGCTTCAGCCTGCGTAGGATTGCCTGCTTGATCAACCGATCCCCTTCGACCATCAGCCGGGAGCTGCGCCGCAATCGAGATGTCT
GTGGCGGATACTCGGCCCACGCGGCCCAGCAGCAGATGCAGGCTCGCCGCCAGGTGTGTCGACCGAAGCGAAAGCTGTTGCCGGGTGGTGAGCGCTTCGA
GTTGGTGGCGCATATGCTCCGTGAGCGTTTGTCTCCCGAGCAGATTGCCGGCAAGCTGCGCAGCATGAACATTCCCAGCCTCAGAGATGCCTACGTCTGT
CGCGAGACGATCTATAACGCGATCTATGCCCTGCCGGTCGGTGAACTGCGCAAGGAGCTGATCATCTGCCTGCGGCAAAGCAAGACGACACGCCGACCGC
GCTCTGGTGGTGTGGATCGGCGCGGCCAGATTCCCGAGATGGTCAGCATCCATGTGCGCCCACCGGAGATCGAAGACCGGCTGATGCCAGGGCATTGGGA
AGGCGACTTGATCAAGGGCAAAGCCAACGCCTCGTGTGTAGGCACGCTGGTGGAGCGAACCAGTGGCTACCTGATGCTGGTGAAGATGAACGACGCGACG
GCGACCTCGGCGATGGAAGGCTTCAGTGCAGCGCTCAATGGCATGCCGCTGGCGATGCGCAAGAGCATGACCTACGACCAGGGTCGAGAAATGGCGCGGC
ATGCTGAAATCACCCAGCAGACTGGGGTGGCGATTTACTTCTGCGACCCGCACAGCCCTTGGCAGCGCGGTAGCAACGAAAACATCAATGGCCTGATCCG
CCAGTACCTGCCCAAAGGCACAGACCTGTCGGTACACAGCCAGGAAGAACTGAATGCCATCGCACTGCAACTGAACATGCGTCCGCGTAAGCGCTTCGAC
TTCAAATGCCCAATCGAAGTTATGGGCGAGGTGATGCAGAAGGCCATGGCTATGCGGCATGATGCTCCAGCTTCAATTCAATGACCGTGTTGCACTCAGC
TCCTGCAACCGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1029 bp342 aa561084+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSYTELSVEERATIQISHVQGFSLRRIACLINRSPSTISRELRRNRDVCGGYSAHAAQQQMQARRQVCRPKRKLLPGGERFELVAHMLRERLSPEQIAGK
LRSMNIPSLRDAYVCRETIYNAIYALPVGELRKELIICLRQSKTTRRPRSGGVDRRGQIPEMVSIHVRPPEIEDRLMPGHWEGDLIKGKANASCVGTLVE
RTSGYLMLVKMNDATATSAMEGFSAALNGMPLAMRKSMTYDQGREMARHAEITQQTGVAIYFCDPHSPWQRGSNENINGLIRQYLPKGTDLSVHSQEELN
AIALQLNMRPRKRFDFKCPIEVMGEVMQKAMAMRHDAPASIQ

 

Blast result :
Comments
ISUnCu4 is 96% aa similar to ISPst1.
References
1] Akhtar,P. (2002) Thesis - Department of Biosciences, University of Birmingham, Birmingham, United Kingdom.
2] Haines,A.S. (2006) Direct Submission GenBank.