ISUnCu4
- Family IS30
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008055 | ND | Plasmid QKH54 | Plasmid QKH54 |
DNA section
IS Length : 1113 bp
Ends
IR Length : 22/27
IRL : GGCGGCGGCAAAAACTGAGTGCAACACCTGACCTTTCCGGTACGGTGCTG
IRR : GGCGGTTGCAGGAGCTGAGTGCAACACGGTCATTGAATTGAAGCTGGAGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTAAACAAAG | GAG | ATTCAAATGG | 3 |
DNA sequence
GGCGGCGGCAAAAACTGAGTGCAACACCTGACCTTTCCGGTACGGTGCTGCCCCTATGTCTTATACCGAACTCAGCGTTGAAGAGCGCGCCACCATTCAA
ATCAGTCATGTCCAAGGCTTCAGCCTGCGTAGGATTGCCTGCTTGATCAACCGATCCCCTTCGACCATCAGCCGGGAGCTGCGCCGCAATCGAGATGTCT
GTGGCGGATACTCGGCCCACGCGGCCCAGCAGCAGATGCAGGCTCGCCGCCAGGTGTGTCGACCGAAGCGAAAGCTGTTGCCGGGTGGTGAGCGCTTCGA
GTTGGTGGCGCATATGCTCCGTGAGCGTTTGTCTCCCGAGCAGATTGCCGGCAAGCTGCGCAGCATGAACATTCCCAGCCTCAGAGATGCCTACGTCTGT
CGCGAGACGATCTATAACGCGATCTATGCCCTGCCGGTCGGTGAACTGCGCAAGGAGCTGATCATCTGCCTGCGGCAAAGCAAGACGACACGCCGACCGC
GCTCTGGTGGTGTGGATCGGCGCGGCCAGATTCCCGAGATGGTCAGCATCCATGTGCGCCCACCGGAGATCGAAGACCGGCTGATGCCAGGGCATTGGGA
AGGCGACTTGATCAAGGGCAAAGCCAACGCCTCGTGTGTAGGCACGCTGGTGGAGCGAACCAGTGGCTACCTGATGCTGGTGAAGATGAACGACGCGACG
GCGACCTCGGCGATGGAAGGCTTCAGTGCAGCGCTCAATGGCATGCCGCTGGCGATGCGCAAGAGCATGACCTACGACCAGGGTCGAGAAATGGCGCGGC
ATGCTGAAATCACCCAGCAGACTGGGGTGGCGATTTACTTCTGCGACCCGCACAGCCCTTGGCAGCGCGGTAGCAACGAAAACATCAATGGCCTGATCCG
CCAGTACCTGCCCAAAGGCACAGACCTGTCGGTACACAGCCAGGAAGAACTGAATGCCATCGCACTGCAACTGAACATGCGTCCGCGTAAGCGCTTCGAC
TTCAAATGCCCAATCGAAGTTATGGGCGAGGTGATGCAGAAGGCCATGGCTATGCGGCATGATGCTCCAGCTTCAATTCAATGACCGTGTTGCACTCAGC
TCCTGCAACCGCC
ATCAGTCATGTCCAAGGCTTCAGCCTGCGTAGGATTGCCTGCTTGATCAACCGATCCCCTTCGACCATCAGCCGGGAGCTGCGCCGCAATCGAGATGTCT
GTGGCGGATACTCGGCCCACGCGGCCCAGCAGCAGATGCAGGCTCGCCGCCAGGTGTGTCGACCGAAGCGAAAGCTGTTGCCGGGTGGTGAGCGCTTCGA
GTTGGTGGCGCATATGCTCCGTGAGCGTTTGTCTCCCGAGCAGATTGCCGGCAAGCTGCGCAGCATGAACATTCCCAGCCTCAGAGATGCCTACGTCTGT
CGCGAGACGATCTATAACGCGATCTATGCCCTGCCGGTCGGTGAACTGCGCAAGGAGCTGATCATCTGCCTGCGGCAAAGCAAGACGACACGCCGACCGC
GCTCTGGTGGTGTGGATCGGCGCGGCCAGATTCCCGAGATGGTCAGCATCCATGTGCGCCCACCGGAGATCGAAGACCGGCTGATGCCAGGGCATTGGGA
AGGCGACTTGATCAAGGGCAAAGCCAACGCCTCGTGTGTAGGCACGCTGGTGGAGCGAACCAGTGGCTACCTGATGCTGGTGAAGATGAACGACGCGACG
GCGACCTCGGCGATGGAAGGCTTCAGTGCAGCGCTCAATGGCATGCCGCTGGCGATGCGCAAGAGCATGACCTACGACCAGGGTCGAGAAATGGCGCGGC
ATGCTGAAATCACCCAGCAGACTGGGGTGGCGATTTACTTCTGCGACCCGCACAGCCCTTGGCAGCGCGGTAGCAACGAAAACATCAATGGCCTGATCCG
CCAGTACCTGCCCAAAGGCACAGACCTGTCGGTACACAGCCAGGAAGAACTGAATGCCATCGCACTGCAACTGAACATGCGTCCGCGTAAGCGCTTCGAC
TTCAAATGCCCAATCGAAGTTATGGGCGAGGTGATGCAGAAGGCCATGGCTATGCGGCATGATGCTCCAGCTTCAATTCAATGACCGTGTTGCACTCAGC
TCCTGCAACCGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1029 bp | 342 aa | 56 | 1084 | + | No |
Chemistry : DDE
ORF sequence :
MSYTELSVEERATIQISHVQGFSLRRIACLINRSPSTISRELRRNRDVCGGYSAHAAQQQMQARRQVCRPKRKLLPGGERFELVAHMLRERLSPEQIAGK
LRSMNIPSLRDAYVCRETIYNAIYALPVGELRKELIICLRQSKTTRRPRSGGVDRRGQIPEMVSIHVRPPEIEDRLMPGHWEGDLIKGKANASCVGTLVE
RTSGYLMLVKMNDATATSAMEGFSAALNGMPLAMRKSMTYDQGREMARHAEITQQTGVAIYFCDPHSPWQRGSNENINGLIRQYLPKGTDLSVHSQEELN
AIALQLNMRPRKRFDFKCPIEVMGEVMQKAMAMRHDAPASIQ
LRSMNIPSLRDAYVCRETIYNAIYALPVGELRKELIICLRQSKTTRRPRSGGVDRRGQIPEMVSIHVRPPEIEDRLMPGHWEGDLIKGKANASCVGTLVE
RTSGYLMLVKMNDATATSAMEGFSAALNGMPLAMRKSMTYDQGREMARHAEITQQTGVAIYFCDPHSPWQRGSNENINGLIRQYLPKGTDLSVHSQEELN
AIALQLNMRPRKRFDFKCPIEVMGEVMQKAMAMRHDAPASIQ
Blast result :
Comments
ISUnCu4 is 96% aa similar to ISPst1.
References
1] Akhtar,P. (2002) Thesis - Department of Biosciences, University of Birmingham, Birmingham, United Kingdom.
2] Haines,A.S. (2006) Direct Submission GenBank.
2] Haines,A.S. (2006) Direct Submission GenBank.