ISUnCu3

  • Family IS21
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008055 ND Uncultured bacterium
Uncultured bacterium plasmid QKH54
DNA section
IS Length : 2596 bp

Ends


IR Length : 40/48

IRL : TGCGGATTCCACGCTGACTCGGACACCCATTCCACGCACATCCGGACAGT
IRR : TGCGGATTCCACGCCATTCGGACACTCAGCCCACGCTGATCCGGACACCT

Insertion site


Left flankDirect repeatRight flankDR Length
GTTGAACGGCTTGATACCCAAGTGGTCA8

DNA sequence

TGCGGATTCCACGCTGACTCGGACACCCATTCCACGCACATCCGGACAGTGATTCCACGCTGATCCGGACACTCATTCCACGAGCATCCGGACACCGATT
TCACGGCCATCCGGACACTTTTCAGGCAGGCAGCTACGCAGGATTTCTTCACTACCATCGACCTCTTTTTCGAAGCAGAGAGGTCGTCGTGGAGCGTTTA
TCCATGCGTAAAATCCGAGAGGTGTTGCGCCTCAAGTTCGACTGCGGCCTGTCCGTGCGCAAGATCGCCCGCAGCCTGGGTACTGGCCACAGCAGTGCCG
GTGATTACCTCTGTCGTTTTGCCGCCAGCGGTCTCAGTTGGCCCTGTTCGTTGTCCGATGCCGAGTTGGAGCAGCAACTGTTCCCGCCGGCCCCGGCGGT
TGCCAGTGAGAAGCGGCCTTTACCCGATTGGGCATGGGTGCATGCCGAACTGCGCCGCCCCGGCGTAACCCTGGCGCTGCTCTGGCAGGAGTACCGCCTG
AGCCAGCCGCAGGGCTTTCAGTACAGCTGGTTCTGTGAGCACTACCGAGCCTGGCAGGGCAAGCTGGACGTGGTGATGCGTCAGGAGCACCGCGTCGGCG
AGAAACTGTTCGTCGACTACGCCGGGCAGACGGTGCCGGTGATCGACCGCCACAGCGGCGAAATCCGCCAGGCGCAGGTGTTCGTCGCGGTGCTTGGCGC
GTCCAGCTACACCTTCGCCGAGGCCACCTGGTCGCAGCAGCTGCCGGACTGGCTGGGCTCGCACGCCCGTTGCTTTGCCTTCCTCGGTGGGGTGCCGGAG
ATCGTGGTGCCGGACAACTTGCGCAGCGCGGTGAGCAAGGCCCATCGCTACGAGCCGGACATCAACCCCAGCTACCTCGACCTGGCCGAGCACTATGGCG
TGGCGGTAGTGCCGGCGCGGGCGCGCAAGCCGCGCGATAAGGCCAAGGCCGAGGTCGGCGTGCAGGTGGTCGAGCGCTGGATCCTCGCCGCGCTGAGGAA
CCGCCAGTTCTTCTCCCTGGACGAACTCAACCGGGCCATTGCCATGCTGCTGGAGCGGCTCAACCAACGCCCGTTCAAGAAGCTGCCGGGCTCACGCCAG
ACGGCCTTCGACAGCCTGGATCGTCCGGCCCTGCGCTCGCTGCCGGAACAGCCCTACGTCTATGCCGAGTGGAAGAAGGCGCGGGTGCACATCGACTACC
ACGTCGAGGTCGACGGGCATTACTACTCGGTGCCCTACCAACTGGTGAAGAAGCAGCTGGAGGTACGCCTGACGGCGCGCACTGTGGAGTGCTTCCACGC
CAACCAACGGGTGGCCAGCCACATACGCTCCCTGCACAAGGGCCGGCACAGCACGCAGACCGAGCACATGCCCAAGAGCCACCGCGAGCATGCCGAGTGG
ACGCCGCAACGGCTGATCCACTGGGCCGAGAAGACCGGGCCGAACACCGCCGGCGTGATCGGCCACATCCTCGAACGACGCGTCCATCCGCAGCATGGCT
ACCGCGCCTGCCTGGGCATCCTGCGTCTGGGCAAACAGCATGGCGAAGAGCGGCTGGAAGCCGCCTGCCAACGCGCCCTGAGCCTCGGGGCCTGTAGCTA
CAAGAGCCTCGAATCGATCCTGCGCCAGGGCCTGGAGAACCTGCCCTTGGCGCAACAGAGCCTGCCCCTGCTACCGGACGACCACGCCAACCTGCGTGGC
CCCGGCTACTACCACTGACCCCAAGGAATCCCACCATGCTGCCCCACCCGACCCTGGACAAGCTCCAGTCCCTGCGCCTGCACGGCATGCTCAAGGCTCT
CGCTGAGCAACTGAAAACCCCGGACATCGACAGCCTGAGCTTCGAGGAACGCCTCGGTCTGCTGGTCGACCGTGAGTTGACTGAGCGCGACGACAAGCGC
CTGAGCAGCCGCCTGCGCCAGGCCAGGCTGCGCCACAACGCCTGCCTCGAAGACATCGACTACCGCAGCCCGCGCGGCCTGGACAAGGCCCTGATCCTCC
AGCTACGCAGCGGCCAGTGGCTGCGCGACGGCCTCAACCTGATCATCGGCGGCCCCACCGGCGTAGGCAAAACCTGGCTGGCCTGCGCCCTGGCCCACCA
GGCATGCCGGGACGGCTACAGCGTGCGTTACCTACGCTTGCCGCGCCTGCTGGAAGAGTTGGGCCTTGCCCACGGTGACGGGCGCTTCGCCAAGCTGATG
AGCAGCTACGCCAAGACCGATCTGCTGATCCTCGATGACTGGGGGCTGGCCCCGTTCACTGCCGAACAACGGCGCGACATGCTGGAGCTGCTGGACGACC
GTTACGGCCAGCGCTCGACCCTGGTGACCAGTCAGATGCCGGTGGACAACTGGCACGAACTGATCGGCGACCCGACCCTGGCCGACGCCATCCTCGACCG
CCTGGTGCACAACGCTTACCGGATCAACCTCAAGGGCGAATCGATGCGCAAACGGGCGAAGAAATTGACGACGCCGGGCACCTCAGACTAACAATGCCAG
CCCTGCGTCGCTGCGCTCCGACTGCCTGTCCGAATGATCGTGGAACAGGTGTCCGGATCAGCGTGGGCTGAGTGTCCGAATGGCGTGGAATCCGCA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1530 bp509 aa1891718+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MERLSMRKIREVLRLKFDCGLSVRKIARSLGTGHSSAGDYLCRFAASGLSWPCSLSDAELEQQLFPPAPAVASEKRPLPDWAWVHAELRRPGVTLALLWQ
EYRLSQPQGFQYSWFCEHYRAWQGKLDVVMRQEHRVGEKLFVDYAGQTVPVIDRHSGEIRQAQVFVAVLGASSYTFAEATWSQQLPDWLGSHARCFAFLG
GVPEIVVPDNLRSAVSKAHRYEPDINPSYLDLAEHYGVAVVPARARKPRDKAKAEVGVQVVERWILAALRNRQFFSLDELNRAIAMLLERLNQRPFKKLP
GSRQTAFDSLDRPALRSLPEQPYVYAEWKKARVHIDYHVEVDGHYYSVPYQLVKKQLEVRLTARTVECFHANQRVASHIRSLHKGRHSTQTEHMPKSHRE
HAEWTPQRLIHWAEKTGPNTAGVIGHILERRVHPQHGYRACLGILRLGKQHGEERLEAACQRALSLGACSYKSLESILRQGLENLPLAQQSLPLLPDDHA
NLRGPGYYH

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
756 bp251 aa17362491+No
ORF function : Accessory Gene
AG : IS21 helper

ORF sequence :

MLPHPTLDKLQSLRLHGMLKALAEQLKTPDIDSLSFEERLGLLVDRELTERDDKRLSSRLRQARLRHNACLEDIDYRSPRGLDKALILQLRSGQWLRDGL
NLIIGGPTGVGKTWLACALAHQACRDGYSVRYLRLPRLLEELGLAHGDGRFAKLMSSYAKTDLLILDDWGLAPFTAEQRRDMLELLDDRYGQRSTLVTSQ
MPVDNWHELIGDPTLADAILDRLVHNAYRINLKGESMRKRAKKLTTPGTSD

 

Blast result :
Comments
ISUnCu3 is 96%(istA) and 97%(istB) aa similar to ISPpu7.
References
1] Akhtar,P. (2002) Thesis
2] Haines,A.S. (2005) Direct Submission GenBank.