ISSag9
- Family IS30
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_007432 | ND | Streptococcus agalactiae | Streptococcus agalactiae A909 Streptococcus agalactiae 2603V/R |
DNA section
IS Length : 1538 bp
Ends
IR Length : 35/50
IRL : AGTAATTTCTCAAAGTAAGTTCCGTCTGCCCTCCAAAACCGGAAGTTAGT
IRR : GCTAAATTCTCAAAGTAAGTTCCACCTCTAGTAGAAATGGAATTTAGTCT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TAATTTCATT | ATATTTTAAATTT | CTTTCCCAAT | 13 |
| TGTGCATGTC | TGATATTTTTAAG | AAAGTGGTTT | 13 |
| GCCACACTAA | TTTTCGATAAAA | AAAGTAAAGC | 12 |
DNA sequence
AGTAATTTCTCAAAGTAAGTTCCGTCTGCCCTCCAAAACCGGAAGTTAGTGTGAAAAGGATTTTTATGGTGGAATTAAGTCTGAGACGTTTGGGTTAGAA
ATGAGTTTATCCATCATGACAAAACACAAACACCTAACTCTCTTAGACCGTAATGACATCCAATCTGGTTTGGATAGAGGAGAAACCTTTAAAGCCATCG
GGCTTAATCTACTGAAACACCCTACTACTATCGCAAAAGAAGTCAAACGAAATAAGCAACTAAGAGAATCAACCAAAGACTGCCTAGACTGTCCGCTACT
AAGAAAAGCTCCCTATGTTTGTAATGGGTGTCCAAAGAGGAGGATCAACTGTGGTTACAAGAAGACCTTCTATCTTGCTAAGCAAGCTCAAAGAAACTAT
GAAAAACTTTTAGTTGAATCTAGAGAAGGAATCCCTTTGAACAAAGAGACCTTCTGGAAAATAGATAGAGTGCTTTCTAATGGGGTCAAGAAGGGCCAAC
GTATCTATCATATCCTCAAAACCAACGATCTAGAAGTGAGTTCTTCAACCGTTTATCGACACATCAAGAAAGGCTACCTATCCATCACACCAATCGACCT
ACCCAGAGCTGTGAAGTTCAAAAAAAGGCGAAAGAGCACACTCCCTCCTATTCCAAAAGCGATTAAAGAAGGGCGACGGTACGAGGATTTTATAGAACAC
ATGAACCAATCAGAGCTGAACTCCTGGCTTGAAATGGACACGGTTATTGGACGGATTGGTGGAAAGGTCCTTCTCACCTTCAATGTCGCCTTCTGTAACT
TCATCTTTGCCAAACTGATGGATTCTAAGACAGCTATCGAAACTGCTAAACACATACAGGTCATTAAGAGGACACTCTATGATAACAAGAGAGACTTCTT
CGAACTCTTTCCTGTTATCCTAACGGATAATGGTGGGGAATTCGCTAGAGTGGATGATATTGAGATAGATGTTTGTGGACAGTCTCAACTCTTCTTTTGT
GACCCTAATCGGTCTGACCAGAAAGCAAGAATCGAGAAGAATCATACCCTCGTGAGAGACATACTGCCTAAGGGGACTTCCTTCGACAACTTGACTCAAG
AGGACATTAATCTGGCACTATCTCATATCAACAGCGTTAAGAGACAGGCTCTAAATGGTAAAACGGCTTATGAGCTATTCTCTTTTACTTACGGAAAAGA
CATCGCAAGTATACTCGGTATTGAGGAAATTACTGCGGAAGACGTCTGCCAATCTCCCAAACTATTAAAAGACAAAATCTAACCTAATCAACTAACTGAT
ACAACCTAAACGTCTCACACTAACTTCAACCATAGCGGAACTTAATCTGAAACGCTTTCAGATGAGGATGTTTTCTTGTACCCTTTTTTTGCGATTTTTA
ACTCTGAAAACCTATGAAATCAAGTATTATAAAAACCAACGGAACTTAGTCTGAGACGGATTTTCGTTGGTTTTTATTGGTTTTTATCAGACTAAATTCC
ATTTCTACTAGAGGTGGAACTTACTTTGAGAATTTAGC
ATGAGTTTATCCATCATGACAAAACACAAACACCTAACTCTCTTAGACCGTAATGACATCCAATCTGGTTTGGATAGAGGAGAAACCTTTAAAGCCATCG
GGCTTAATCTACTGAAACACCCTACTACTATCGCAAAAGAAGTCAAACGAAATAAGCAACTAAGAGAATCAACCAAAGACTGCCTAGACTGTCCGCTACT
AAGAAAAGCTCCCTATGTTTGTAATGGGTGTCCAAAGAGGAGGATCAACTGTGGTTACAAGAAGACCTTCTATCTTGCTAAGCAAGCTCAAAGAAACTAT
GAAAAACTTTTAGTTGAATCTAGAGAAGGAATCCCTTTGAACAAAGAGACCTTCTGGAAAATAGATAGAGTGCTTTCTAATGGGGTCAAGAAGGGCCAAC
GTATCTATCATATCCTCAAAACCAACGATCTAGAAGTGAGTTCTTCAACCGTTTATCGACACATCAAGAAAGGCTACCTATCCATCACACCAATCGACCT
ACCCAGAGCTGTGAAGTTCAAAAAAAGGCGAAAGAGCACACTCCCTCCTATTCCAAAAGCGATTAAAGAAGGGCGACGGTACGAGGATTTTATAGAACAC
ATGAACCAATCAGAGCTGAACTCCTGGCTTGAAATGGACACGGTTATTGGACGGATTGGTGGAAAGGTCCTTCTCACCTTCAATGTCGCCTTCTGTAACT
TCATCTTTGCCAAACTGATGGATTCTAAGACAGCTATCGAAACTGCTAAACACATACAGGTCATTAAGAGGACACTCTATGATAACAAGAGAGACTTCTT
CGAACTCTTTCCTGTTATCCTAACGGATAATGGTGGGGAATTCGCTAGAGTGGATGATATTGAGATAGATGTTTGTGGACAGTCTCAACTCTTCTTTTGT
GACCCTAATCGGTCTGACCAGAAAGCAAGAATCGAGAAGAATCATACCCTCGTGAGAGACATACTGCCTAAGGGGACTTCCTTCGACAACTTGACTCAAG
AGGACATTAATCTGGCACTATCTCATATCAACAGCGTTAAGAGACAGGCTCTAAATGGTAAAACGGCTTATGAGCTATTCTCTTTTACTTACGGAAAAGA
CATCGCAAGTATACTCGGTATTGAGGAAATTACTGCGGAAGACGTCTGCCAATCTCCCAAACTATTAAAAGACAAAATCTAACCTAATCAACTAACTGAT
ACAACCTAAACGTCTCACACTAACTTCAACCATAGCGGAACTTAATCTGAAACGCTTTCAGATGAGGATGTTTTCTTGTACCCTTTTTTTGCGATTTTTA
ACTCTGAAAACCTATGAAATCAAGTATTATAAAAACCAACGGAACTTAGTCTGAGACGGATTTTCGTTGGTTTTTATTGGTTTTTATCAGACTAAATTCC
ATTTCTACTAGAGGTGGAACTTACTTTGAGAATTTAGC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1167 bp | 388 aa | 116 | 1282 | + | No |
Description :
ORF sequence :
MTKHKHLTLLDRNDIQSGLDRGETFKAIGLNLLKHPTTIAKEVKRNKQLRESTKDCLDCPLLRKAPYVCNGCPKRRINCGYKKTFYLAKQAQRNYEKLLV
ESREGIPLNKETFWKIDRVLSNGVKKGQRIYHILKTNDLEVSSSTVYRHIKKGYLSITPIDLPRAVKFKKRRKSTLPPIPKAIKEGRRYEDFIEHMNQSE
LNSWLEMDTVIGRIGGKVLLTFNVAFCNFIFAKLMDSKTAIETAKHIQVIKRTLYDNKRDFFELFPVILTDNGGEFARVDDIEIDVCGQSQLFFCDPNRS
DQKARIEKNHTLVRDILPKGTSFDNLTQEDINLALSHINSVKRQALNGKTAYELFSFTYGKDIASILGIEEITAEDVCQSPKLLKDKI
ESREGIPLNKETFWKIDRVLSNGVKKGQRIYHILKTNDLEVSSSTVYRHIKKGYLSITPIDLPRAVKFKKRRKSTLPPIPKAIKEGRRYEDFIEHMNQSE
LNSWLEMDTVIGRIGGKVLLTFNVAFCNFIFAKLMDSKTAIETAKHIQVIKRTLYDNKRDFFELFPVILTDNGGEFARVDDIEIDVCGQSQLFFCDPNRS
DQKARIEKNHTLVRDILPKGTSFDNLTQEDINLALSHINSVKRQALNGKTAYELFSFTYGKDIASILGIEEITAEDVCQSPKLLKDKI
Blast result :
Comments
There are 3 copies of ISSag9 in the chromosome of Streptococcus agalactiae A909.
ISSag9 is 44% aa similar to ISLjo1.
ISSag9 is 44% aa similar to ISLjo1.
References
1] Tettelin,H., Masignani,V., Cieslewicz,M.J., Donati,C., Medini,D., Ward,N.L., Angiuoli,S.V., Crabtree,J., Jones,A.L., Durkin,A.S., Deboy,R.T., Davidsen,T.M., Mora,M., Scarselli,M., Margarit Y Ros,I., Peterson,J.D., Hauser,C.R., Sundaram,J.P., Nelson,W.C., Madupu,R., Brinkac,L.M., Dodson,R.J., Rosovitz,M.J., Sullivan,S.A., Daugherty,S.C., Haft,D.H., Selengut,J., Gwinn,M.L., Zhou,L., Zafar,N., Khouri,H., Radune,D., Dimitrov,G., Watkins,K., O'connor,K.J., Smith,S., Utterback,T.R., White,O., Rubens,C.E., Grandi,G., Madoff,L.C., Kasper,D.L., Telford,J.L., Wessels,M.R., Rappuoli,R. and Fraser,C.M. (2005)(er) Proc. Natl. Acad. Sci. U.S.A. 102 (39), 13950-13955.