ISSag3

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007432 ND Streptococcus agalactiae
Streptococcus agalactiae A909
Streptococcus agalactiae 98-D60C
DNA section
IS Length : 1164 bp

Ends


IR Length : 21/27

IRL : CCCGCGTTGTAAAATGAAGTGCAACAAAAAAGACATGCTCGTCTGATATA
IRR : CCCCACTTGTCAAGTCAAGTGCAACAAGTTCATTGATAACTAGAGTTCCA

Insertion site


Left flankDirect repeatRight flankDR Length
AAATAGCAAAGATATTATTT0

DNA sequence

CCCGCGTTGTAAAATGAAGTGCAACAAAAAAGACATGCTCGTCTGATATACTAGAATTCCCCAACTCAGTATAGAAAGCAGATGAACATGTCCACTAATC
ATTCTACCAAAAAATCGTTATACTCACACCTTTCAGCCTCTGAACGCGGAGAAATCAGCGCCTATCTCAAGATGGGCAAAAAACCCTCTGAGATTGCTCA
TCTGCTTGGGCGTCATCGCTCAACCATCAGTCGTGAAATCAAACGAGGAAGTGTTTCTCAGGTTCAAGATAAGAACGGGAAACGAATCTACTCAACGGTT
TATTTTCCAGATAGTGGTCAACGTGTTTATGAAACCAATCGTCGAAAAAGTGCCTATCATAAACTATCGTACTGCTCCCAGACCTTCTTCAAGGAACTTG
AGAAAGCCCTGAAAACGAAACCTCGTTGTCACAGTGTCGATAGCTTTGTTCAAACTTACCAAGAAAAACCTCCACTGGAAGTTATCCCTTCCACCAAGAC
AGTGTATCGTTACATCAAAGACGGACTGTTGAGGGTTAAACCGATTGATTTACCTAAGATGGTGTGCATCCGAAAACGGGCTAAAGTAACGCCTAAGGCC
ACGAAGAAAATCTTAGGAAAATCCATTGAAGAACGTCCAGAAACTATTACCAATCGTTCTGAATTTGGACATTGGGAAATTGATCTCATGCTTGGCAAGA
AGACCAAAGGGGAAGCTGTTGTCATGACCCTAGTAGAGCGTCAAACACGATTTGTCATCGCTGTAAAACTGGCTAATAAACAAGCAGAAACCATCAATAG
GGCTGTTAAGAGCTTACTATCACAGTATCCTATTCGCTCTATCGCATCGGACAACGGCTCAGAGTTCAGTAGCTTGTCAGACTTAAAAGGTGTGGAAGTC
TATTTTGCCCATCCTTATGCTTCTCATGAAAGAGGAACAAATGAAAATTTCAATGGTCTCTTGAGAGAGTTTCTCCCAAAAGGTGTCTCTCTTAACTCAC
TAACGACAGAAGAACTCAATCTCTACGTCTCTGCTATCAATGACAGACCTAGACGAATTCAAAAGTATAAAACCGCAAATATTTTGTTTGGGCTAGCCCA
AACAGCTTAACCTCTGGAACTCTAGTTATCAATGAACTTGTTGCACTTGACTTGACAAGTGGGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1023 bp340 aa881110+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSTNHSTKKSLYSHLSASERGEISAYLKMGKKPSEIAHLLGRHRSTISREIKRGSVSQVQDKNGKRIYSTVYFPDSGQRVYETNRRKSAYHKLSYCSQTF
FKELEKALKTKPRCHSVDSFVQTYQEKPPLEVIPSTKTVYRYIKDGLLRVKPIDLPKMVCIRKRAKVTPKATKKILGKSIEERPETITNRSEFGHWEIDL
MLGKKTKGEAVVMTLVERQTRFVIAVKLANKQAETINRAVKSLLSQYPIRSIASDNGSEFSSLSDLKGVEVYFAHPYASHERGTNENFNGLLREFLPKGV
SLNSLTTEELNLYVSAINDRPRRIQKYKTANILFGLAQTA

 

Blast result :
Comments
There is 1 copy of ISSag3 in the chromosome of Streptococcus agalactiae A909.
ISSag3 is 70% aa similar to IS1139.
References
1]Tettelin,H., Masignani,V., Cieslewicz,M.J., Donati,C., Medini,D., Ward,N.L., Angiuoli,S.V., Crabtree,J., Jones,A.L., Durkin,A.S., Deboy,R.T., Davidsen,T.M., Mora,M., Scarselli,M., Margarit,Y., Ros,I., Peterson,J.D., Hauser,C.R., Sundaram,J.P., Nelson,W.C., Madupu,R., Brinkac,L.M., Dodson,R.J., Rosovitz,M.J., Sullivan,S.A.,Daugherty,S.C., Haft,D.H., Selengut,J., Gwinn,M.L., Zhou,L., Zafar,N., Khouri,H., Radune,D., Dimitrov,G., Watkins,K., O'connor,K.J., Smith,S., Utterback,T.R., White,O., Rubens,C.E., Grandi,G., Madoff,L.C., Kasper,D.L., Telford,J.L., Wessels,M.R., Rappuoli,R. and Fraser,C.M. (2005) (er) Proc. Natl. Acad. Sci. U.S.A. 102 (39), 13950-13955