ISTth8
- Family IS701
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_005835 | ND | Thermus thermophilus | Thermus thermophilus HB27 plasmid pTT27 Thermus thermophilus HB27 Thermus thermophilus HB8 plasmid pTT27 |
DNA section
IS Length : 1016 bp
Ends
IR Length : 14
IRL : CTGGACTTACGCGGTGCTGAAGATCCCCGATAAAATGGGCCCCCGGTGAC
IRR : CTGGACTTACGCGGCCTCCACCTGCACCGGTAACAGAGGGCTCAAATCCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGGGGAGTGGGGGTTC | TACCTT | CTCTTCGCCTTCC | 6 |
DNA sequence
CTGGACTTACGCGGTGCTGAAGATCCCCGATAAAATGGGCCCCCGGTGACTAGGGAGGCCCGATGAAGAGGATACCACGGCCCGTTCTGCGCGCTCTAGA
AGCTTTAGCCCAAAGCCCCATCAATACCTCCGCCCTGGCCATGGCCGAGGGCCAAGGCTTCGCCCACGACACCCTCTACCGCGCCCTGGGCCAACCCCTG
GCCTTCTTCTTTGAGCTCTCCCTGAAGCTCTGCCGAGACCTCGGCGGCCTGGACCGGGGCTACCTCATCCTTGATGACGTCTTCATCCAGCGCTACCGTT
CGGGCAGGCTAGGCCTAAGGAAGATGCGGGACACCGCCACAGGGGGCTGGGCCTACGGGCTTTCCCTGGTGGTCCTGGCCTGGACGGACGGGAAGCGGCG
GATTCCCCTGGCCTTCCTGCCCTACTTCGGGGAAGAGGAGAGCAAGCTGGACCTGGCCCTGGCCCTGCTGGAGTGGGCCAAGGAGGCGGGCTTTCGTCCG
GAGGGGGTGCTCTTTGACGCCTGGTACGCGGCGCGGCAGGTCCTGGAGTGGCTCCATGTGCACGGCTGGCCTTTTGTGACGAGGCTCAGGTCTAACCGTG
TGCTGGACGGTGTCCAGTTGCGGCGGCATGGGGGTACCCGTTGGGTGAAGACGGGGAGGCTTAGGGGCCTGACCTTTGCCGTGGGGGTGCTCAAGCGTGG
GGGGAAGTTTTACGGGACGGACCGGGAGGGGTGGTGGGACTCGGGGATGCGGGAGGTTTACCGGATGCGGCAGGCCATTGAGGAAATATTCCGGGGGCTG
CAGCAGGAGCTTGGGTGGACGGGGCACCGGCACTGGCGGAGGGGGAAGCTACTGGCGCACTTGGCGCTAGGGCTGGTGGCCTACGGGCTGATAGAGCGGC
AACGGGAGGGGCTGGGGTTGAGCTTTTATCAGTGCCGACGGAGACTCATCGCGGGTAAGCTGAGCCTGGATTTGAGCCCTCTGTTACCGGTGCAGGTGGA
GGCCGCGTAAGTCCAG
AGCTTTAGCCCAAAGCCCCATCAATACCTCCGCCCTGGCCATGGCCGAGGGCCAAGGCTTCGCCCACGACACCCTCTACCGCGCCCTGGGCCAACCCCTG
GCCTTCTTCTTTGAGCTCTCCCTGAAGCTCTGCCGAGACCTCGGCGGCCTGGACCGGGGCTACCTCATCCTTGATGACGTCTTCATCCAGCGCTACCGTT
CGGGCAGGCTAGGCCTAAGGAAGATGCGGGACACCGCCACAGGGGGCTGGGCCTACGGGCTTTCCCTGGTGGTCCTGGCCTGGACGGACGGGAAGCGGCG
GATTCCCCTGGCCTTCCTGCCCTACTTCGGGGAAGAGGAGAGCAAGCTGGACCTGGCCCTGGCCCTGCTGGAGTGGGCCAAGGAGGCGGGCTTTCGTCCG
GAGGGGGTGCTCTTTGACGCCTGGTACGCGGCGCGGCAGGTCCTGGAGTGGCTCCATGTGCACGGCTGGCCTTTTGTGACGAGGCTCAGGTCTAACCGTG
TGCTGGACGGTGTCCAGTTGCGGCGGCATGGGGGTACCCGTTGGGTGAAGACGGGGAGGCTTAGGGGCCTGACCTTTGCCGTGGGGGTGCTCAAGCGTGG
GGGGAAGTTTTACGGGACGGACCGGGAGGGGTGGTGGGACTCGGGGATGCGGGAGGTTTACCGGATGCGGCAGGCCATTGAGGAAATATTCCGGGGGCTG
CAGCAGGAGCTTGGGTGGACGGGGCACCGGCACTGGCGGAGGGGGAAGCTACTGGCGCACTTGGCGCTAGGGCTGGTGGCCTACGGGCTGATAGAGCGGC
AACGGGAGGGGCTGGGGTTGAGCTTTTATCAGTGCCGACGGAGACTCATCGCGGGTAAGCTGAGCCTGGATTTGAGCCCTCTGTTACCGGTGCAGGTGGA
GGCCGCGTAAGTCCAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
948 bp | 315 aa | 63 | 1010 | + | No |
Chemistry : DDE
ORF sequence :
MKRIPRPVLRALEALAQSPINTSALAMAEGQGFAHDTLYRALGQPLAFFFELSLKLCRDLGGLDRGYLILDDVFIQRYRSGRLGLRKMRDTATGGWAYGL
SLVVLAWTDGKRRIPLAFLPYFGEEESKLDLALALLEWAKEAGFRPEGVLFDAWYAARQVLEWLHVHGWPFVTRLRSNRVLDGVQLRRHGGTRWVKTGRL
RGLTFAVGVLKRGGKFYGTDREGWWDSGMREVYRMRQAIEEIFRGLQQELGWTGHRHWRRGKLLAHLALGLVAYGLIERQREGLGLSFYQCRRRLIAGKL
SLDLSPLLPVQVEAA
SLVVLAWTDGKRRIPLAFLPYFGEEESKLDLALALLEWAKEAGFRPEGVLFDAWYAARQVLEWLHVHGWPFVTRLRSNRVLDGVQLRRHGGTRWVKTGRL
RGLTFAVGVLKRGGKFYGTDREGWWDSGMREVYRMRQAIEEIFRGLQQELGWTGHRHWRRGKLLAHLALGLVAYGLIERQREGLGLSFYQCRRRLIAGKL
SLDLSPLLPVQVEAA
Blast result :
Comments
ISTth8 is 41% aa similar to ISDha5.
References
1] Henne,A., Brueggemann,H., Raasch,C., Wiezer,A., Hartsch,T., Liesegang,H., Johann,A., Lienard,T., Gohl,O., Martinez-Arias,R., Jacobi,C., Starkuviene,V., Schlenczeck,S., Dencker,S., Huber,R., Klenk,H.-P., Overbeek,R., Kramer,W., Merkl,R., Gottschalk,G. and Fritz,H.-J. (2004) Nat. Biotechnol. 22 (5), 547-553