ISSmu5
- Family IS982
- Group
Isoform Synonym(s) IS1216
Accession number | Transposition | Origin | Host |
---|---|---|---|
AF104381 | ND | Streptococcus mutans | Streptococcus mutans UA143 plasmid pUA143 |
DNA section
IS Length : 951 bp
Ends
IR Length : 17/18
IRL : CCCGTGGTGCTAGTTTATTTTTAGTTCACAAAAAAGTCCATTTGGATTAT
IRR : CCCGTGGTGCTAGTTAAAAAATCTTAGGTTATAAGCAAAGATAGCCTGCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GATATCATAT | ATGATATC | ATATAAAGCG | 8 |
DNA sequence
CCCGTGGTGCTAGTTTATTTTTAGTTCACAAAAAAGTCCATTTGGATTATGCTGTTAGTGATCAAACGAACAGGAGTTACCCAAATGAACCACTTACATT
ATACCGCTAAACATCATCACTTACAATACAGTATGACACAATTAAAAGTCATATGTTCTTACTATTATCGCCACTATGCCCCTAAAGAACTGACACAGCG
GCGAAATGTTCACTATTGTAAGGTTAATGACGATACCATTCTTGTTCTTTTAGTGCTTCAAGCTGAACTTGGTATCAAATCTCAACGCCGATTTTATCAA
CTATGCCAAGTCTTTCTTGTAACAACTGGCTTGGAGCGAACCCGATTCTATCGAAGAGCTCGCTATCTCATTCCTTTATTGAAGCGCATTCATCAGGGCA
TGACGAGCCAATTTCATCAGGATGATATCGTCATTATGGATAGCTTTCCCATACCGGTTTGTTGCCCAGCTCGCCACTATAAGGTTTGCATTTTTAGGGA
TCAAGCGACGATTTCCTATAATCCTTCAAAAAAGATGTGGTTTTATGGCTTTAAGGCCCATATGTTAGTCACCTTGTCGGGTTTTATTGTGAACTATGTT
GTGACGCCGGCTTCTGTTCATGATCGTCAGGTGGCCGAAGACCTGCTTGAGAACACACCCTTTCCTATTGTTTTAGCGGACTTAGGCTACCTCAGTCAGG
TTTTGAAACAGCATTTAACCCAGAGAGGCTATCATTTTTGGACGCCTTTAAGGCGTAACATGGCCAATGCCAAGAAGCACAATCATTGGAAGCTCAAGGC
GGAAAGAAGAACCATTGAAACGCGATTTTCAGTTTTGTGTTCGGAGTTTGATATTGAAAGGCCATTAGCGAGAAGTTTAAAGGGGTTGGAGCTTTGGTTA
GAGCAGGCTATCTTTGCTTATAACCTAAGATTTTTTAACTAGCACCACGGG
ATACCGCTAAACATCATCACTTACAATACAGTATGACACAATTAAAAGTCATATGTTCTTACTATTATCGCCACTATGCCCCTAAAGAACTGACACAGCG
GCGAAATGTTCACTATTGTAAGGTTAATGACGATACCATTCTTGTTCTTTTAGTGCTTCAAGCTGAACTTGGTATCAAATCTCAACGCCGATTTTATCAA
CTATGCCAAGTCTTTCTTGTAACAACTGGCTTGGAGCGAACCCGATTCTATCGAAGAGCTCGCTATCTCATTCCTTTATTGAAGCGCATTCATCAGGGCA
TGACGAGCCAATTTCATCAGGATGATATCGTCATTATGGATAGCTTTCCCATACCGGTTTGTTGCCCAGCTCGCCACTATAAGGTTTGCATTTTTAGGGA
TCAAGCGACGATTTCCTATAATCCTTCAAAAAAGATGTGGTTTTATGGCTTTAAGGCCCATATGTTAGTCACCTTGTCGGGTTTTATTGTGAACTATGTT
GTGACGCCGGCTTCTGTTCATGATCGTCAGGTGGCCGAAGACCTGCTTGAGAACACACCCTTTCCTATTGTTTTAGCGGACTTAGGCTACCTCAGTCAGG
TTTTGAAACAGCATTTAACCCAGAGAGGCTATCATTTTTGGACGCCTTTAAGGCGTAACATGGCCAATGCCAAGAAGCACAATCATTGGAAGCTCAAGGC
GGAAAGAAGAACCATTGAAACGCGATTTTCAGTTTTGTGTTCGGAGTTTGATATTGAAAGGCCATTAGCGAGAAGTTTAAAGGGGTTGGAGCTTTGGTTA
GAGCAGGCTATCTTTGCTTATAACCTAAGATTTTTTAACTAGCACCACGGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
894 bp | 297 aa | 49 | 942 | + | No |
Chemistry : DDE
ORF sequence :
MLLVIKRTGVTQMNHLHYTAKHHHLQYSMTQLKVICSYYYRHYAPKELTQRRNVHYCKVNDDTILVLLVLQAELGIKSQRRFYQLCQVFLVTTGLERTRF
YRRARYLIPLLKRIHQGMTSQFHQDDIVIMDSFPIPVCCPARHYKVCIFRDQATISYNPSKKMWFYGFKAHMLVTLSGFIVNYVVTPASVHDRQVAEDLL
ENTPFPIVLADLGYLSQVLKQHLTQRGYHFWTPLRRNMANAKKHNHWKLKAERRTIETRFSVLCSEFDIERPLARSLKGLELWLEQAIFAYNLRFFN
YRRARYLIPLLKRIHQGMTSQFHQDDIVIMDSFPIPVCCPARHYKVCIFRDQATISYNPSKKMWFYGFKAHMLVTLSGFIVNYVVTPASVHDRQVAEDLL
ENTPFPIVLADLGYLSQVLKQHLTQRGYHFWTPLRRNMANAKKHNHWKLKAERRTIETRFSVLCSEFDIERPLARSLKGLELWLEQAIFAYNLRFFN
Blast result :
Comments
ISSmu5 is 73% aa similar to ISScr1.
ISSmu5 was named IS1216 in GenBank file, but this name was already used by another IS, submitted in 1994 and belonging of IS6 family.
ISSmu5 was named IS1216 in GenBank file, but this name was already used by another IS, submitted in 1994 and belonging of IS6 family.
References
1] Zou,X.H. (1998) Direct Submission GenBank.