ISSmu5

  • Family IS982
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s) IS1216
Accession numberTranspositionOriginHost
AF104381 ND Streptococcus mutans
Streptococcus mutans UA143 plasmid pUA143
DNA section
IS Length : 951 bp

Ends


IR Length : 17/18

IRL : CCCGTGGTGCTAGTTTATTTTTAGTTCACAAAAAAGTCCATTTGGATTAT
IRR : CCCGTGGTGCTAGTTAAAAAATCTTAGGTTATAAGCAAAGATAGCCTGCT

Insertion site


Left flankDirect repeatRight flankDR Length
GATATCATATATGATATCATATAAAGCG8

DNA sequence

CCCGTGGTGCTAGTTTATTTTTAGTTCACAAAAAAGTCCATTTGGATTATGCTGTTAGTGATCAAACGAACAGGAGTTACCCAAATGAACCACTTACATT
ATACCGCTAAACATCATCACTTACAATACAGTATGACACAATTAAAAGTCATATGTTCTTACTATTATCGCCACTATGCCCCTAAAGAACTGACACAGCG
GCGAAATGTTCACTATTGTAAGGTTAATGACGATACCATTCTTGTTCTTTTAGTGCTTCAAGCTGAACTTGGTATCAAATCTCAACGCCGATTTTATCAA
CTATGCCAAGTCTTTCTTGTAACAACTGGCTTGGAGCGAACCCGATTCTATCGAAGAGCTCGCTATCTCATTCCTTTATTGAAGCGCATTCATCAGGGCA
TGACGAGCCAATTTCATCAGGATGATATCGTCATTATGGATAGCTTTCCCATACCGGTTTGTTGCCCAGCTCGCCACTATAAGGTTTGCATTTTTAGGGA
TCAAGCGACGATTTCCTATAATCCTTCAAAAAAGATGTGGTTTTATGGCTTTAAGGCCCATATGTTAGTCACCTTGTCGGGTTTTATTGTGAACTATGTT
GTGACGCCGGCTTCTGTTCATGATCGTCAGGTGGCCGAAGACCTGCTTGAGAACACACCCTTTCCTATTGTTTTAGCGGACTTAGGCTACCTCAGTCAGG
TTTTGAAACAGCATTTAACCCAGAGAGGCTATCATTTTTGGACGCCTTTAAGGCGTAACATGGCCAATGCCAAGAAGCACAATCATTGGAAGCTCAAGGC
GGAAAGAAGAACCATTGAAACGCGATTTTCAGTTTTGTGTTCGGAGTTTGATATTGAAAGGCCATTAGCGAGAAGTTTAAAGGGGTTGGAGCTTTGGTTA
GAGCAGGCTATCTTTGCTTATAACCTAAGATTTTTTAACTAGCACCACGGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
894 bp297 aa49942+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLLVIKRTGVTQMNHLHYTAKHHHLQYSMTQLKVICSYYYRHYAPKELTQRRNVHYCKVNDDTILVLLVLQAELGIKSQRRFYQLCQVFLVTTGLERTRF
YRRARYLIPLLKRIHQGMTSQFHQDDIVIMDSFPIPVCCPARHYKVCIFRDQATISYNPSKKMWFYGFKAHMLVTLSGFIVNYVVTPASVHDRQVAEDLL
ENTPFPIVLADLGYLSQVLKQHLTQRGYHFWTPLRRNMANAKKHNHWKLKAERRTIETRFSVLCSEFDIERPLARSLKGLELWLEQAIFAYNLRFFN

 

Blast result :
Comments
ISSmu5 is 73% aa similar to ISScr1.
ISSmu5 was named IS1216 in GenBank file, but this name was already used by another IS, submitted in 1994 and belonging of IS6 family.
References
1] Zou,X.H. (1998) Direct Submission GenBank.