ISSpy2

  • Family IS982
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008023 ND Streptococcus pyogenes
Streptococcus pyogenes MGAS2096
DNA section
IS Length : 962 bp

Ends


IR Length : 21/23

IRL : ACTCGTGGTGCTAGTTAATGTCAGAATACAATAAAAAGCCCAAAAGGACT
IRR : ACTCGTGGTGCTAGTTAAACTCAACGTATTTCAGATTATAAGCAAGGATA

Insertion site


Left flankDirect repeatRight flankDR Length
AACATATAAACACTTA/TTCTTTATTA9
TAACTAAATATACTTTATAAATGTT7
ATAATATAAAATATTTATAAATAC6

DNA sequence

ACTCGTGGTGCTAGTTAATGTCAGAATACAATAAAAAGCCCAAAAGGACTATACTGTAAGTGTTCAAACAAACAGGAGGTTAGCCCCAATGAGCCACTTA
CAGTATACCGCTAAATCCCATCACTTACAATGGAATGTCACACAATTATCTACGATTTGCCATCAGCTATATCGTGATTATTGTCCAGAAGGCTTAAAAC
ACCGTCGTAACATTAGCTTGTCCAAGGTCTCAGATGAGTCTCTACTAGTCTTGCTTGTCTTGCAAGCTGAATTAGGTATTAAGTCACAACGGCATTTTTA
TCGTATCTGTCAACTCTTTCCTTGCGGTCATCTCCTTGAAAGAAGTCGTTTTAATCGACGAGCAAGACAATTAATTTGGTTAGTCCAAGTCATTAGACAA
GCCATGAATGCTCGAATTTCTCCTGATACAATAGTCATCATCGACAGTTTTCCTCTACCACTTTGTCAACCTGTCCGTAATCATAGAGCCCATATTTTTA
AAGGAGTGGCTGATATTGGTTATAACACCTCTAAGCACCTGTGGTTCTATGGGTTCAAAGTCCACATGTTAGTGACTTTATCAGGCTATATTCTTAACTA
TGTGGTCACACCAGCTTCTGTTCATGATATTAAAGCGGTTCACGAGTTATTAGAAGAATGTGACCAGTCCATCATTTTAGCAGACTTGGGCTACCTTAGC
CGTGAGCTGAAAAATAATCTGGAACAAAAAGGCTATCAGCTATGGACACCCTTGCGTCAAAATATGACAGGGGCTAAACAGCATAATCATTGGAGAGTAA
TGGCTATGAGACGAACTATTGAAACTCGATTTTCAGAACTTTGTTCCCTTTTTGATATAGAACACACACTGACTAGAGGAGTTACAGGATTACAATTGAG
AATCGAACAAATTATCCTTGCTTATAATCTGAAATACGTTGAGTTTAACTAGCACCACGAGT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
864 bp287 aa89952+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSHLQYTAKSHHLQWNVTQLSTICHQLYRDYCPEGLKHRRNISLSKVSDESLLVLLVLQAELGIKSQRHFYRICQLFPCGHLLERSRFNRRARQLIWLVQ
VIRQAMNARISPDTIVIIDSFPLPLCQPVRNHRAHIFKGVADIGYNTSKHLWFYGFKVHMLVTLSGYILNYVVTPASVHDIKAVHELLEECDQSIILADL
GYLSRELKNNLEQKGYQLWTPLRQNMTGAKQHNHWRVMAMRRTIETRFSELCSLFDIEHTLTRGVTGLQLRIEQIILAYNLKYVEFN

 

Blast result :
Comments
ISSpy2 is 89% aa similar to ISScr1.
References