ISSpy2
- Family IS982
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008023 | ND | Streptococcus pyogenes | Streptococcus pyogenes MGAS2096 |
DNA section
IS Length : 962 bp
Ends
IR Length : 21/23
IRL : ACTCGTGGTGCTAGTTAATGTCAGAATACAATAAAAAGCCCAAAAGGACT
IRR : ACTCGTGGTGCTAGTTAAACTCAACGTATTTCAGATTATAAGCAAGGATA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AACATATAA | ACACTTA/T | TCTTTATTA | 9 |
TAACTAAAT | ATACTTT | ATAAATGTT | 7 |
ATAATATAA | AATATT | TATAAATAC | 6 |
DNA sequence
ACTCGTGGTGCTAGTTAATGTCAGAATACAATAAAAAGCCCAAAAGGACTATACTGTAAGTGTTCAAACAAACAGGAGGTTAGCCCCAATGAGCCACTTA
CAGTATACCGCTAAATCCCATCACTTACAATGGAATGTCACACAATTATCTACGATTTGCCATCAGCTATATCGTGATTATTGTCCAGAAGGCTTAAAAC
ACCGTCGTAACATTAGCTTGTCCAAGGTCTCAGATGAGTCTCTACTAGTCTTGCTTGTCTTGCAAGCTGAATTAGGTATTAAGTCACAACGGCATTTTTA
TCGTATCTGTCAACTCTTTCCTTGCGGTCATCTCCTTGAAAGAAGTCGTTTTAATCGACGAGCAAGACAATTAATTTGGTTAGTCCAAGTCATTAGACAA
GCCATGAATGCTCGAATTTCTCCTGATACAATAGTCATCATCGACAGTTTTCCTCTACCACTTTGTCAACCTGTCCGTAATCATAGAGCCCATATTTTTA
AAGGAGTGGCTGATATTGGTTATAACACCTCTAAGCACCTGTGGTTCTATGGGTTCAAAGTCCACATGTTAGTGACTTTATCAGGCTATATTCTTAACTA
TGTGGTCACACCAGCTTCTGTTCATGATATTAAAGCGGTTCACGAGTTATTAGAAGAATGTGACCAGTCCATCATTTTAGCAGACTTGGGCTACCTTAGC
CGTGAGCTGAAAAATAATCTGGAACAAAAAGGCTATCAGCTATGGACACCCTTGCGTCAAAATATGACAGGGGCTAAACAGCATAATCATTGGAGAGTAA
TGGCTATGAGACGAACTATTGAAACTCGATTTTCAGAACTTTGTTCCCTTTTTGATATAGAACACACACTGACTAGAGGAGTTACAGGATTACAATTGAG
AATCGAACAAATTATCCTTGCTTATAATCTGAAATACGTTGAGTTTAACTAGCACCACGAGT
CAGTATACCGCTAAATCCCATCACTTACAATGGAATGTCACACAATTATCTACGATTTGCCATCAGCTATATCGTGATTATTGTCCAGAAGGCTTAAAAC
ACCGTCGTAACATTAGCTTGTCCAAGGTCTCAGATGAGTCTCTACTAGTCTTGCTTGTCTTGCAAGCTGAATTAGGTATTAAGTCACAACGGCATTTTTA
TCGTATCTGTCAACTCTTTCCTTGCGGTCATCTCCTTGAAAGAAGTCGTTTTAATCGACGAGCAAGACAATTAATTTGGTTAGTCCAAGTCATTAGACAA
GCCATGAATGCTCGAATTTCTCCTGATACAATAGTCATCATCGACAGTTTTCCTCTACCACTTTGTCAACCTGTCCGTAATCATAGAGCCCATATTTTTA
AAGGAGTGGCTGATATTGGTTATAACACCTCTAAGCACCTGTGGTTCTATGGGTTCAAAGTCCACATGTTAGTGACTTTATCAGGCTATATTCTTAACTA
TGTGGTCACACCAGCTTCTGTTCATGATATTAAAGCGGTTCACGAGTTATTAGAAGAATGTGACCAGTCCATCATTTTAGCAGACTTGGGCTACCTTAGC
CGTGAGCTGAAAAATAATCTGGAACAAAAAGGCTATCAGCTATGGACACCCTTGCGTCAAAATATGACAGGGGCTAAACAGCATAATCATTGGAGAGTAA
TGGCTATGAGACGAACTATTGAAACTCGATTTTCAGAACTTTGTTCCCTTTTTGATATAGAACACACACTGACTAGAGGAGTTACAGGATTACAATTGAG
AATCGAACAAATTATCCTTGCTTATAATCTGAAATACGTTGAGTTTAACTAGCACCACGAGT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
864 bp | 287 aa | 89 | 952 | + | No |
Chemistry : DDE
ORF sequence :
MSHLQYTAKSHHLQWNVTQLSTICHQLYRDYCPEGLKHRRNISLSKVSDESLLVLLVLQAELGIKSQRHFYRICQLFPCGHLLERSRFNRRARQLIWLVQ
VIRQAMNARISPDTIVIIDSFPLPLCQPVRNHRAHIFKGVADIGYNTSKHLWFYGFKVHMLVTLSGYILNYVVTPASVHDIKAVHELLEECDQSIILADL
GYLSRELKNNLEQKGYQLWTPLRQNMTGAKQHNHWRVMAMRRTIETRFSELCSLFDIEHTLTRGVTGLQLRIEQIILAYNLKYVEFN
VIRQAMNARISPDTIVIIDSFPLPLCQPVRNHRAHIFKGVADIGYNTSKHLWFYGFKVHMLVTLSGYILNYVVTPASVHDIKAVHELLEECDQSIILADL
GYLSRELKNNLEQKGYQLWTPLRQNMTGAKQHNHWRVMAMRRTIETRFSELCSLFDIEHTLTRGVTGLQLRIEQIILAYNLKYVEFN
Blast result :
Comments
ISSpy2 is 89% aa similar to ISScr1.
References