ISLhe5
- Family IS982
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_010080 | ND | Lactobacillus helveticus | Lactobacillus helveticus DPC 4571 |
DNA section
IS Length : 965 bp
Ends
IR Length : 27/28
IRL : ACGCGTGGTGCTAGTTAAATCGTTTTAGTTAAATAAAAAGTCCAATCTTG
IRR : ACGCGTGGTGCTAGTTAAATCGTTCTAGACAATATGCCATATTGTAAGCT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GATGAGACTT | ATTTAAATAT | 0 |
DNA sequence
ACGCGTGGTGCTAGTTAAATCGTTTTAGTTAAATAAAAAGTCCAATCTTGTTAGACTCGACTTGTAAATAGTAATAATAGAAAAGAGTCTGACTCGATTG
AACTACCTCAAGCTTAAGCGTTTTTCTCACCATTTACAAGTTAGTTTTAGTCGTTTGAATATGATTTGTCGTTCCTGGTACAAGCTGTATGCACCGGATT
CTTTGAAGCATCGCAGAAATACTGATCATACCAAGATATCTGATAGTTCTATACTGGCTATGCTTATCTGGCAAGCAGAATTAGGAATCGAATCTCAAAG
AAGATTCTGTAAATTCTTTGCAGGATTATCCCATTCAAGATTTAATCGCAGATCTCGTCAGCTTTTACCACTGATTTACTTGATTCGTCATGTTCTGAAC
CAAGAAGTAGATCTGTCAGGCAAAATATTGATTATTGATAGTTTTCCTGTTCCGGTCTGTCAGCCTGTTCGCAATTATCGCGTTAAAATCTTTCACGATA
TGGCTGATATTGGATACAAAGCAACGAAAAAAGTCTACTATTATGGCTTTAAGGTTCATGCCATTGTAAGTGATGACGGCTACTTGCTTGATTACGCAGT
AACTAAAGCATCAGTGCATGATGCCAAGGAAACTACAGAACTGATGGCCAATGCCCATCCTGTTAACCATTATCTTTTAGGTGATGAAGGCTACCTCGGC
AAAGATTTAGCTTTCAAGTTAAATCAAATGGGCTATAAACTTTGGACACCATACCGCAAAAACATGCAAGGCGCCAAAGAGCACAATGATCATCAGCTAA
TGGCTATCAGAAGAACAATCGAGAGCGATTTCTCCTTGCTTAGCTATTACAACGCTGAAAATAATCGTGCTCGGAGTCTAACAGGTTTTCAGGAACGGCT
TGAAGCTGCAGTTTTAGCTTACAATATGGCATATTGTCTAGAACGATTTAACTAGCACCACGCGT
AACTACCTCAAGCTTAAGCGTTTTTCTCACCATTTACAAGTTAGTTTTAGTCGTTTGAATATGATTTGTCGTTCCTGGTACAAGCTGTATGCACCGGATT
CTTTGAAGCATCGCAGAAATACTGATCATACCAAGATATCTGATAGTTCTATACTGGCTATGCTTATCTGGCAAGCAGAATTAGGAATCGAATCTCAAAG
AAGATTCTGTAAATTCTTTGCAGGATTATCCCATTCAAGATTTAATCGCAGATCTCGTCAGCTTTTACCACTGATTTACTTGATTCGTCATGTTCTGAAC
CAAGAAGTAGATCTGTCAGGCAAAATATTGATTATTGATAGTTTTCCTGTTCCGGTCTGTCAGCCTGTTCGCAATTATCGCGTTAAAATCTTTCACGATA
TGGCTGATATTGGATACAAAGCAACGAAAAAAGTCTACTATTATGGCTTTAAGGTTCATGCCATTGTAAGTGATGACGGCTACTTGCTTGATTACGCAGT
AACTAAAGCATCAGTGCATGATGCCAAGGAAACTACAGAACTGATGGCCAATGCCCATCCTGTTAACCATTATCTTTTAGGTGATGAAGGCTACCTCGGC
AAAGATTTAGCTTTCAAGTTAAATCAAATGGGCTATAAACTTTGGACACCATACCGCAAAAACATGCAAGGCGCCAAAGAGCACAATGATCATCAGCTAA
TGGCTATCAGAAGAACAATCGAGAGCGATTTCTCCTTGCTTAGCTATTACAACGCTGAAAATAATCGTGCTCGGAGTCTAACAGGTTTTCAGGAACGGCT
TGAAGCTGCAGTTTTAGCTTACAATATGGCATATTGTCTAGAACGATTTAACTAGCACCACGCGT
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 858 bp | 285 aa | 98 | 955 | + | No |
Chemistry : DDE
ORF sequence :
LNYLKLKRFSHHLQVSFSRLNMICRSWYKLYAPDSLKHRRNTDHTKISDSSILAMLIWQAELGIESQRRFCKFFAGLSHSRFNRRSRQLLPLIYLIRHVL
NQEVDLSGKILIIDSFPVPVCQPVRNYRVKIFHDMADIGYKATKKVYYYGFKVHAIVSDDGYLLDYAVTKASVHDAKETTELMANAHPVNHYLLGDEGYL
GKDLAFKLNQMGYKLWTPYRKNMQGAKEHNDHQLMAIRRTIESDFSLLSYYNAENNRARSLTGFQERLEAAVLAYNMAYCLERFN
NQEVDLSGKILIIDSFPVPVCQPVRNYRVKIFHDMADIGYKATKKVYYYGFKVHAIVSDDGYLLDYAVTKASVHDAKETTELMANAHPVNHYLLGDEGYL
GKDLAFKLNQMGYKLWTPYRKNMQGAKEHNDHQLMAIRRTIESDFSLLSYYNAENNRARSLTGFQERLEAAVLAYNMAYCLERFN
Blast result :
Comments
ISLhe5 is 85% aa similar to ISLh1.
References
1] Callanan,M., Kaleta,P., O'Callaghan,J., O'Sullivan,O., Jordan,K., McAuliffe,O., Sangrador-Vegas,A., Slattery,L., Fitzgerald,G.F., Beresford,T. and Ross,R.P. (2007)(er) J. Bacteriol. In press.
2] Callanan,M.J., Kaleta,P., O'Callaghan,J., O'Sullivan,O., Jordan,K., McAuliffe,O., Sangrador,A., Slattery,L., Ross,P. and Beresford,T. (2006) Direct Submission GenBank.
2] Callanan,M.J., Kaleta,P., O'Callaghan,J., O'Sullivan,O., Jordan,K., McAuliffe,O., Sangrador,A., Slattery,L., Ross,P. and Beresford,T. (2006) Direct Submission GenBank.