ISLsp3
- Family IS1380
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| DS180872 | ND | Leptospirillum rubarum | Leptospirillum rubarum LeptoII_Scaffold_8062 |
DNA section
IS Length : 1560 bp
Ends
IR Length : 13/15
IRL : CGAAGGGTGAAACGAAAGGGGCAACTTCATGGTACGACAACACGTTCTTC
IRR : GGAAGGGTGAAGAGAGGAAATCCAGATCTTCGAACGGGATTTCCTTCCTG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TTTACCCACC | TGTGAGGGTC | 0 |
DNA sequence
CGAAGGGTGAAACGAAAGGGGCAACTTCATGGTACGACAACACGTTCTTCCCTTCAAGCTCGAAGCGACCGATGACACGATAACATCACAGGCGGGTCTG
GTCCTGTTCGGGGAGTTTCTTCACTCCCTGGATCTCAGGAAGGAGATTGACCGGGCCTTTGGAGCCCCGGGGAGCGGAGCGGGATATTCGGCCTCGGCCT
ATGTTCTTCCGCTTTTGCTGATGCTGAATGGAGGAGGACGGAGCCTTTCGGATCTTCGGATGATCGGGCGGGATGCGGGGCTCCTGTCCCTTCTGGGAAT
CGATGCGGTTCCCTCGACGGACGCCTTCGGACGATGGCTCAGACGGATGGGCGGAAAAGGTCCGGGACTCTCGGCGATGGAGAGGGTGATCGACCGGGTC
GTCACCGTTTTGGGAAAGAGGCTGCGGAGACGACGGAGAAAGGCGGGAGGAGCCCCTGTCCGGGAGGTCACCCTCGATATCGACGCGAGCCAGATCGTGG
CGGAGAAGGAAAAGGCCCACTGGACCTATAAGGGAGAAAAAGGATACATGCCCCTGGTGGGACATGTGCGGGAACTCTCCGGGATGGTGATCCATGAGGA
GTTCCGGGAAGGGAACGTCTCCCCGGGAACCGGCCATGTGCCGTTTCTGAAAGACTGCCTCCGGCGGCTTCCGGACGGGGTCCGGGTCACACGGTTTCGG
GCGGACAGCGCCAGCTACCAGGCCGAGGTGTTCAACCTGTGTTTCGAAAAAGGCATCCGGTTCGTGGTCGGAGCCGACCTGGATGCGGCGGTTCGGGCGG
CGATCGGGATGATTCCCGACACCGCCTGGCGCCCTTACCGGGACGGCCACATCGCGGAGACGGTGCACACCATGAACAAAACGCACAATGCCTTCCGGCT
GATCGTGGTGAGGAAGCGGATCCAGGGCTCTCTTCCGGGTCTTCCGACGGAGCCTCCCTCCTTCGAGACCCGGTACAAGGTGCTGGCGACGAATCACAAA
GAGATCCCCGAATGGGTGCTGGACTGGTATAACCAGCGGGGAGACGACTCCGAAAACCGGATCAAGGAGCTGAAGATCGGGTTCGGGATGGAGCGGATGC
CGAGCGGGGAGACGAAAGCCAATGCTCTCTTTTTCAGAATTGGCGTCCTGGCCTACAACCTCTTTCTTCTGTTTCGGGGACAGATCCTCTCCGAGGCGTT
TGATCGCGCCCAGATCCAGACGGTGCGCTGGCAGGTCTACCAGGTGGCCGGAAAGGTGGTGCGTCATGCGGGAGCGCTTCTTCTGAAGGTGGCGGACGAT
CTCCTGCCCTTCTTTCAAACGCTTCGGGAACGAAGCTATCGGCTGATGTGCCAGCAACGCGTCACATGACGGAAGTGGCGGCTCTGTTTTCGACGATAAA
GACCCGCTCACACGAAAGACAGGAGGCTTGCGTGCAGAGAGCGCCTTAGAACCGTTCAAAGGCGGGATGGAGGAAGAATTTCACCCCCCATCCGGAGACG
ATCAGGGGGTCAGGAAGGAAATCCCGTTCGAAGATCTGGATTTCCTCTCTTCACCCTTCC
GTCCTGTTCGGGGAGTTTCTTCACTCCCTGGATCTCAGGAAGGAGATTGACCGGGCCTTTGGAGCCCCGGGGAGCGGAGCGGGATATTCGGCCTCGGCCT
ATGTTCTTCCGCTTTTGCTGATGCTGAATGGAGGAGGACGGAGCCTTTCGGATCTTCGGATGATCGGGCGGGATGCGGGGCTCCTGTCCCTTCTGGGAAT
CGATGCGGTTCCCTCGACGGACGCCTTCGGACGATGGCTCAGACGGATGGGCGGAAAAGGTCCGGGACTCTCGGCGATGGAGAGGGTGATCGACCGGGTC
GTCACCGTTTTGGGAAAGAGGCTGCGGAGACGACGGAGAAAGGCGGGAGGAGCCCCTGTCCGGGAGGTCACCCTCGATATCGACGCGAGCCAGATCGTGG
CGGAGAAGGAAAAGGCCCACTGGACCTATAAGGGAGAAAAAGGATACATGCCCCTGGTGGGACATGTGCGGGAACTCTCCGGGATGGTGATCCATGAGGA
GTTCCGGGAAGGGAACGTCTCCCCGGGAACCGGCCATGTGCCGTTTCTGAAAGACTGCCTCCGGCGGCTTCCGGACGGGGTCCGGGTCACACGGTTTCGG
GCGGACAGCGCCAGCTACCAGGCCGAGGTGTTCAACCTGTGTTTCGAAAAAGGCATCCGGTTCGTGGTCGGAGCCGACCTGGATGCGGCGGTTCGGGCGG
CGATCGGGATGATTCCCGACACCGCCTGGCGCCCTTACCGGGACGGCCACATCGCGGAGACGGTGCACACCATGAACAAAACGCACAATGCCTTCCGGCT
GATCGTGGTGAGGAAGCGGATCCAGGGCTCTCTTCCGGGTCTTCCGACGGAGCCTCCCTCCTTCGAGACCCGGTACAAGGTGCTGGCGACGAATCACAAA
GAGATCCCCGAATGGGTGCTGGACTGGTATAACCAGCGGGGAGACGACTCCGAAAACCGGATCAAGGAGCTGAAGATCGGGTTCGGGATGGAGCGGATGC
CGAGCGGGGAGACGAAAGCCAATGCTCTCTTTTTCAGAATTGGCGTCCTGGCCTACAACCTCTTTCTTCTGTTTCGGGGACAGATCCTCTCCGAGGCGTT
TGATCGCGCCCAGATCCAGACGGTGCGCTGGCAGGTCTACCAGGTGGCCGGAAAGGTGGTGCGTCATGCGGGAGCGCTTCTTCTGAAGGTGGCGGACGAT
CTCCTGCCCTTCTTTCAAACGCTTCGGGAACGAAGCTATCGGCTGATGTGCCAGCAACGCGTCACATGACGGAAGTGGCGGCTCTGTTTTCGACGATAAA
GACCCGCTCACACGAAAGACAGGAGGCTTGCGTGCAGAGAGCGCCTTAGAACCGTTCAAAGGCGGGATGGAGGAAGAATTTCACCCCCCATCCGGAGACG
ATCAGGGGGTCAGGAAGGAAATCCCGTTCGAAGATCTGGATTTCCTCTCTTCACCCTTCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1341 bp | 446 aa | 29 | 1369 | + | No |
Chemistry : DDE
ORF sequence :
MVRQHVLPFKLEATDDTITSQAGLVLFGEFLHSLDLRKEIDRAFGAPGSGAGYSASAYVLPLLLMLNGGGRSLSDLRMIGRDAGLLSLLGIDAVPSTDAF
GRWLRRMGGKGPGLSAMERVIDRVVTVLGKRLRRRRRKAGGAPVREVTLDIDASQIVAEKEKAHWTYKGEKGYMPLVGHVRELSGMVIHEEFREGNVSPG
TGHVPFLKDCLRRLPDGVRVTRFRADSASYQAEVFNLCFEKGIRFVVGADLDAAVRAAIGMIPDTAWRPYRDGHIAETVHTMNKTHNAFRLIVVRKRIQG
SLPGLPTEPPSFETRYKVLATNHKEIPEWVLDWYNQRGDDSENRIKELKIGFGMERMPSGETKANALFFRIGVLAYNLFLLFRGQILSEAFDRAQIQTVR
WQVYQVAGKVVRHAGALLLKVADDLLPFFQTLRERSYRLMCQQRVT
GRWLRRMGGKGPGLSAMERVIDRVVTVLGKRLRRRRRKAGGAPVREVTLDIDASQIVAEKEKAHWTYKGEKGYMPLVGHVRELSGMVIHEEFREGNVSPG
TGHVPFLKDCLRRLPDGVRVTRFRADSASYQAEVFNLCFEKGIRFVVGADLDAAVRAAIGMIPDTAWRPYRDGHIAETVHTMNKTHNAFRLIVVRKRIQG
SLPGLPTEPPSFETRYKVLATNHKEIPEWVLDWYNQRGDDSENRIKELKIGFGMERMPSGETKANALFFRIGVLAYNLFLLFRGQILSEAFDRAQIQTVR
WQVYQVAGKVVRHAGALLLKVADDLLPFFQTLRERSYRLMCQQRVT
Blast result :
Comments
ISLsp3 is 58% aa similar to ISSlsp1.
References
1] Lo,I., Denef,V.J., Verberkmoes,N.C., Shah,M.B., Goltsman,D., Dibartolo,G., Tyson,G.W., Allen,E.E., Ram,R.J., Detter,J.C., Richardson,P., Thelen,M.P., Hettich,R.L. and Banfield,J.F. (2007) Nature 446 (7135), 537-541.
2] Goltsman,D., Denef,V.J., Banfield,J.F., Tyson,G.W., Allen,E.E., Copeland,A., Lucas,S., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P. (2007) Direct Submission GenBank.
2] Goltsman,D., Denef,V.J., Banfield,J.F., Tyson,G.W., Allen,E.E., Copeland,A., Lucas,S., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P. (2007) Direct Submission GenBank.