ISEnca1

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AY939911 ND Enterococcus casseliflavus
Enterococcus casseliflavus HZ95 plasmid unnamed
DNA section
IS Length : 1658 bp

Ends


IR Length : 16/25

IRL : CTGAGATTCTACGTCAGTACTTTATAAACCACCCTCAAAGCATTGATAAA
IRR : CCTAAATTCCACGTGCATTTTTTATTAGCTTAAAAGAACACTATTTCACG

Insertion site


Left flankDirect repeatRight flankDR Length
GGCTGCTTAATAATAGAAAATC2

DNA sequence

CTGAGATTCTACGTCAGTACTTTATAAACCACCCTCAAAGCATTGATAAATATACGTTCCTTCAAAATTCAGCTTTCACCCATTGGGTGAAAGAAAAATG
CTCAAAAATGTGTTGAATTATCAGCTTTTATGAGTCGATATATGGTACAATAATAGTAACAAAAGCAGCAGAAAAAGGGGTTTAAATTATGATTAATAAA
ATTGATTTCACAGCTAAGAATCTAACATCAAATGCAGGTCTTTTTCTTCTCCTTGAGAACGCAAAAAGTAATGAGATTTTTGATCTAGTTGAAGATGACC
TCGTATTTGATAATGACTCCACAAATAAAATCAAGATGAATCATATAAAGACGATGATCTGTGGTCACTTTATTGGTATAGACAAGCTAGAACGTCTAAA
GCTCCTTCAAAATGATCCACTCGTTAATGAATTTGATATTTCCGTAAAAGAACCTGAAACAGTGTCACGATTTTTAGGAAACTTCACCTTTAAGACAACA
CAAATGTTTAGAGACATTAATTTTAAAGTCTTTAAAAAACTGCTCACTAAAAGTAAATTGACATCCATTACGATTGATATTGATAGTAGTGTAATCAACG
TAGAAGGTCATCAAGAAGGTGCATCAAAAGGATATAATCCCAAGAAACTAGGAAACCGATGCTACAATATCCAGTTTGCATTTTGCGACGAATTAAAAGC
CTACGTCACCGGATTTGTAAGAAGTGGCAATACTTACACAGCTAACGGTGCATCTGAAATGATCAAAGAAATAGTAGCCAACATCAAAACAGATGATTTA
GAGATTTTATTTCGAATGGATAGTGGCTACTTTGATGAAAAAATTATTGAAACGATAGAATCTCTTGGTTGCAAATATTTAATTAAAGCCAAAAGTTATT
CTACGCTTGCATCCCAAGCAACGAATTCATCGGTTGTATTCGTTAAAGGTGAAGAAGGCAGAGAAACTACAGAACTGTTTACAAAATTAGATAACTGGGA
GAAAGACAGAAGGTTTGTTGTGTCTCGCGTACTGAAACCAGAAAAAGAAAGAGCACAAATATCACTTTTAGAAGGCTCTGAGTACGAATACTTTTTCTTT
GTGACAAACACTACATTGCTTTCTGAAAAAGTAGTTATATCCTATGAAAAACGTGGCAATGCTGAGAACTATATTAAAGAAGCCAAATACGACATGGCGG
TGGGTCATCTTTTACTTAAATCATTTTGGGCAAATGAAGCGGTGTTTCAAATGATGATGCTTTCATATAACCTGTTTTTGTTGTTCAAGATTGATTCCTT
AGAGCCTTCAGAATACAGACAGCAAATAAAGACCTTTCGTTTGAAGTATGTATTTCTTGCAGCCAAAATCATTAAAACCGCAAGAACTGTAATTATGAAT
TTGTCAGAAAACTATCCGTACAAGGAAGTGTATGAAAAATGTCTGGTATAATAAAGATATCATCTTGAAAATCGAGTGTTGCTCTGTGGATAACTTGCAG
GGTTTAATAAGTATCTTTACTCCAAAGTTGCAATCAATAATTTATTGAAAAAGATTGAAAGGTGGTGGTAAATAATGTTACAATGTGGGAGTATCAGTTT
AAATTCTTCGTGAAATAGTGTTCTTTTAAGCTAATAAAAAATGCACGTGGAATTTAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1263 bp420 aa1891451+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MINKIDFTAKNLTSNAGLFLLLENAKSNEIFDLVEDDLVFDNDSTNKIKMNHIKTMICGHFIGIDKLERLKLLQNDPLVNEFDISVKEPETVSRFLGNFT
FKTTQMFRDINFKVFKKLLTKSKLTSITIDIDSSVINVEGHQEGASKGYNPKKLGNRCYNIQFAFCDELKAYVTGFVRSGNTYTANGASEMIKEIVANIK
TDDLEILFRMDSGYFDEKIIETIESLGCKYLIKAKSYSTLASQATNSSVVFVKGEEGRETTELFTKLDNWEKDRRFVVSRVLKPEKERAQISLLEGSEYE
YFFFVTNTTLLSEKVVISYEKRGNAENYIKEAKYDMAVGHLLLKSFWANEAVFQMMMLSYNLFLLFKIDSLEPSEYRQQIKTFRLKYVFLAAKIIKTART
VIMNLSENYPYKEVYEKCLV

 

Blast result :
Comments
ISEnca1 is 96% aa similar to ISEcp1 et ISEc9.
References
1] Chen,Y.-G., Qu,T.-T., Yu,Y.-S., Zhou,J.-Y. and Li,L.-J.(2006) J. Med. Microbiol. 55 (PT 11), 1521-1525 (2006)
2] Qu,T.-T., Yu,Y.-S. and Chen,Y.-G.(2005) Direct Submission GenBank.