ISEnca1
- Family IS1380
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AY939911 | ND | Enterococcus casseliflavus | Enterococcus casseliflavus HZ95 plasmid unnamed |
DNA section
IS Length : 1658 bp
Ends
IR Length : 16/25
IRL : CTGAGATTCTACGTCAGTACTTTATAAACCACCCTCAAAGCATTGATAAA
IRR : CCTAAATTCCACGTGCATTTTTTATTAGCTTAAAAGAACACTATTTCACG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGCTGCTTAA | TA | ATAGAAAATC | 2 |
DNA sequence
CTGAGATTCTACGTCAGTACTTTATAAACCACCCTCAAAGCATTGATAAATATACGTTCCTTCAAAATTCAGCTTTCACCCATTGGGTGAAAGAAAAATG
CTCAAAAATGTGTTGAATTATCAGCTTTTATGAGTCGATATATGGTACAATAATAGTAACAAAAGCAGCAGAAAAAGGGGTTTAAATTATGATTAATAAA
ATTGATTTCACAGCTAAGAATCTAACATCAAATGCAGGTCTTTTTCTTCTCCTTGAGAACGCAAAAAGTAATGAGATTTTTGATCTAGTTGAAGATGACC
TCGTATTTGATAATGACTCCACAAATAAAATCAAGATGAATCATATAAAGACGATGATCTGTGGTCACTTTATTGGTATAGACAAGCTAGAACGTCTAAA
GCTCCTTCAAAATGATCCACTCGTTAATGAATTTGATATTTCCGTAAAAGAACCTGAAACAGTGTCACGATTTTTAGGAAACTTCACCTTTAAGACAACA
CAAATGTTTAGAGACATTAATTTTAAAGTCTTTAAAAAACTGCTCACTAAAAGTAAATTGACATCCATTACGATTGATATTGATAGTAGTGTAATCAACG
TAGAAGGTCATCAAGAAGGTGCATCAAAAGGATATAATCCCAAGAAACTAGGAAACCGATGCTACAATATCCAGTTTGCATTTTGCGACGAATTAAAAGC
CTACGTCACCGGATTTGTAAGAAGTGGCAATACTTACACAGCTAACGGTGCATCTGAAATGATCAAAGAAATAGTAGCCAACATCAAAACAGATGATTTA
GAGATTTTATTTCGAATGGATAGTGGCTACTTTGATGAAAAAATTATTGAAACGATAGAATCTCTTGGTTGCAAATATTTAATTAAAGCCAAAAGTTATT
CTACGCTTGCATCCCAAGCAACGAATTCATCGGTTGTATTCGTTAAAGGTGAAGAAGGCAGAGAAACTACAGAACTGTTTACAAAATTAGATAACTGGGA
GAAAGACAGAAGGTTTGTTGTGTCTCGCGTACTGAAACCAGAAAAAGAAAGAGCACAAATATCACTTTTAGAAGGCTCTGAGTACGAATACTTTTTCTTT
GTGACAAACACTACATTGCTTTCTGAAAAAGTAGTTATATCCTATGAAAAACGTGGCAATGCTGAGAACTATATTAAAGAAGCCAAATACGACATGGCGG
TGGGTCATCTTTTACTTAAATCATTTTGGGCAAATGAAGCGGTGTTTCAAATGATGATGCTTTCATATAACCTGTTTTTGTTGTTCAAGATTGATTCCTT
AGAGCCTTCAGAATACAGACAGCAAATAAAGACCTTTCGTTTGAAGTATGTATTTCTTGCAGCCAAAATCATTAAAACCGCAAGAACTGTAATTATGAAT
TTGTCAGAAAACTATCCGTACAAGGAAGTGTATGAAAAATGTCTGGTATAATAAAGATATCATCTTGAAAATCGAGTGTTGCTCTGTGGATAACTTGCAG
GGTTTAATAAGTATCTTTACTCCAAAGTTGCAATCAATAATTTATTGAAAAAGATTGAAAGGTGGTGGTAAATAATGTTACAATGTGGGAGTATCAGTTT
AAATTCTTCGTGAAATAGTGTTCTTTTAAGCTAATAAAAAATGCACGTGGAATTTAGG
CTCAAAAATGTGTTGAATTATCAGCTTTTATGAGTCGATATATGGTACAATAATAGTAACAAAAGCAGCAGAAAAAGGGGTTTAAATTATGATTAATAAA
ATTGATTTCACAGCTAAGAATCTAACATCAAATGCAGGTCTTTTTCTTCTCCTTGAGAACGCAAAAAGTAATGAGATTTTTGATCTAGTTGAAGATGACC
TCGTATTTGATAATGACTCCACAAATAAAATCAAGATGAATCATATAAAGACGATGATCTGTGGTCACTTTATTGGTATAGACAAGCTAGAACGTCTAAA
GCTCCTTCAAAATGATCCACTCGTTAATGAATTTGATATTTCCGTAAAAGAACCTGAAACAGTGTCACGATTTTTAGGAAACTTCACCTTTAAGACAACA
CAAATGTTTAGAGACATTAATTTTAAAGTCTTTAAAAAACTGCTCACTAAAAGTAAATTGACATCCATTACGATTGATATTGATAGTAGTGTAATCAACG
TAGAAGGTCATCAAGAAGGTGCATCAAAAGGATATAATCCCAAGAAACTAGGAAACCGATGCTACAATATCCAGTTTGCATTTTGCGACGAATTAAAAGC
CTACGTCACCGGATTTGTAAGAAGTGGCAATACTTACACAGCTAACGGTGCATCTGAAATGATCAAAGAAATAGTAGCCAACATCAAAACAGATGATTTA
GAGATTTTATTTCGAATGGATAGTGGCTACTTTGATGAAAAAATTATTGAAACGATAGAATCTCTTGGTTGCAAATATTTAATTAAAGCCAAAAGTTATT
CTACGCTTGCATCCCAAGCAACGAATTCATCGGTTGTATTCGTTAAAGGTGAAGAAGGCAGAGAAACTACAGAACTGTTTACAAAATTAGATAACTGGGA
GAAAGACAGAAGGTTTGTTGTGTCTCGCGTACTGAAACCAGAAAAAGAAAGAGCACAAATATCACTTTTAGAAGGCTCTGAGTACGAATACTTTTTCTTT
GTGACAAACACTACATTGCTTTCTGAAAAAGTAGTTATATCCTATGAAAAACGTGGCAATGCTGAGAACTATATTAAAGAAGCCAAATACGACATGGCGG
TGGGTCATCTTTTACTTAAATCATTTTGGGCAAATGAAGCGGTGTTTCAAATGATGATGCTTTCATATAACCTGTTTTTGTTGTTCAAGATTGATTCCTT
AGAGCCTTCAGAATACAGACAGCAAATAAAGACCTTTCGTTTGAAGTATGTATTTCTTGCAGCCAAAATCATTAAAACCGCAAGAACTGTAATTATGAAT
TTGTCAGAAAACTATCCGTACAAGGAAGTGTATGAAAAATGTCTGGTATAATAAAGATATCATCTTGAAAATCGAGTGTTGCTCTGTGGATAACTTGCAG
GGTTTAATAAGTATCTTTACTCCAAAGTTGCAATCAATAATTTATTGAAAAAGATTGAAAGGTGGTGGTAAATAATGTTACAATGTGGGAGTATCAGTTT
AAATTCTTCGTGAAATAGTGTTCTTTTAAGCTAATAAAAAATGCACGTGGAATTTAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1263 bp | 420 aa | 189 | 1451 | + | No |
Chemistry : DDE
ORF sequence :
MINKIDFTAKNLTSNAGLFLLLENAKSNEIFDLVEDDLVFDNDSTNKIKMNHIKTMICGHFIGIDKLERLKLLQNDPLVNEFDISVKEPETVSRFLGNFT
FKTTQMFRDINFKVFKKLLTKSKLTSITIDIDSSVINVEGHQEGASKGYNPKKLGNRCYNIQFAFCDELKAYVTGFVRSGNTYTANGASEMIKEIVANIK
TDDLEILFRMDSGYFDEKIIETIESLGCKYLIKAKSYSTLASQATNSSVVFVKGEEGRETTELFTKLDNWEKDRRFVVSRVLKPEKERAQISLLEGSEYE
YFFFVTNTTLLSEKVVISYEKRGNAENYIKEAKYDMAVGHLLLKSFWANEAVFQMMMLSYNLFLLFKIDSLEPSEYRQQIKTFRLKYVFLAAKIIKTART
VIMNLSENYPYKEVYEKCLV
FKTTQMFRDINFKVFKKLLTKSKLTSITIDIDSSVINVEGHQEGASKGYNPKKLGNRCYNIQFAFCDELKAYVTGFVRSGNTYTANGASEMIKEIVANIK
TDDLEILFRMDSGYFDEKIIETIESLGCKYLIKAKSYSTLASQATNSSVVFVKGEEGRETTELFTKLDNWEKDRRFVVSRVLKPEKERAQISLLEGSEYE
YFFFVTNTTLLSEKVVISYEKRGNAENYIKEAKYDMAVGHLLLKSFWANEAVFQMMMLSYNLFLLFKIDSLEPSEYRQQIKTFRLKYVFLAAKIIKTART
VIMNLSENYPYKEVYEKCLV
Blast result :
Comments
ISEnca1 is 96% aa similar to ISEcp1 et ISEc9.
References
1] Chen,Y.-G., Qu,T.-T., Yu,Y.-S., Zhou,J.-Y. and Li,L.-J.(2006) J. Med. Microbiol. 55 (PT 11), 1521-1525 (2006)
2] Qu,T.-T., Yu,Y.-S. and Chen,Y.-G.(2005) Direct Submission GenBank.
2] Qu,T.-T., Yu,Y.-S. and Chen,Y.-G.(2005) Direct Submission GenBank.