ISTth4
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_006462 | ND | Thermus thermophilus | Thermus thermophilus HB8 Thermus thermophilus HB8 plasmid pTT27 |
DNA section
IS Length : 1258 bp
Ends
IR Length : 28/34
IRL : GGTCGTGTAAGGATTTATGTGTAAGGATCCGTGTTTAATAGGGGGGCACA
IRR : GGTCGTGTCAAGAGTTATGTGTAAGAGTCTGTGTACGGGGGGCATACCGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGGGCACCACGATGGC | CACGAAGG | TGAGGGGGCCGA | 8 |
DNA sequence
GGTCGTGTAAGGATTTATGTGTAAGGATCCGTGTTTAATAGGGGGGCACACCTTAGCACGAGGAGGTGCCCCGTGGACCAGGATACCTTGCGGATCTTGC
TGAGGGAAGCGGTGCGGGAGACAGTAGCCGAGGTTCTGCAGACGGTTCTGGAGCTGGACCGGACAGCCTTCTTGCAGGTGCACGGAGGCCGCAGGAACGG
CTACTACCCCCGCAAGCTGGAGACCACCTTCGGCCAGGTGGACCTGAAGGTCCCTAGGGATCGGGAATCTCGGTATTACCCGGCTTTCCTTAAGCCCTAC
GCCCGCCGCCTGGTGGACGTGGGGGAAGTAGCTGTGGCCTTGTACGCCGCCGGGGTCAGTCAGCGCAAGGCGGCCGAGATACTGAGCCTGCTCCTGGGCC
ACCGCTACTCCCACGAGACCCTGAGCGCCCTGACGGACGAGGTCCTGGAGGCGGCAGGAGCCTTCCGCACCCGGCCTTTGCCCGAGGAGATGGCCTTCGT
CTACCTGGACGGGCTTTCCCTAAAGGTCTTCAGGGAAGGAGAAGGGATCGTACGGGAAAGCGTGTATGTGGCCCTGGGCATCGCCCCTAATGGGGAGAGG
CGGGTCCTGGGGTTCTGGCTTTTGCCCACGGAGAGCGCCCTGGGATGGGAGGGGGTCCTGGGGGAGCTTTGGCAGCGGGGCCTGCGGCGGGTGTTGCTCT
TTGTCACCGACGGGCTGCCCGGGCTTCCTGAAGCGATCCGCAGGGTCTACCCTCAGGCGGAATGGCAGCGGTGCGTGGTGCACGGGGTGCGGTGGAGCCT
GTCCCAGGTGCGCTCCCGGGACCGGGCCCTGCTGGCGGAGGACCTGAGGCGGGTGTACGGGGCGGAGAGCCGGGAAGAAGCTCTTGGGGCCTTGGAGGAG
GTGAAGGCCGCCTGGGGTTCGCGGTACCCGGGGGTGGTGGGGCTTTGGGTACAGGATTCGGGGGCCTTCCTGCGCTTCTACGGGTACCCCAAGGTGCTTT
GGCCGTACCTGCGGAGCACCAACCTGATGGAGCGGTTTATCCGGGAGCTACGGCGGGGGACGAAGGTGCGGGACCACAAGTTTCCTAAGGAAGAGGCGGT
GTACAAGCTTCTTTACCTGGAGTCGGAGAGGCAGGAAGGGAGGTGGGCAGAACGGAAACTAAAGGGGTTCTCGGAGGTGAAGGAGGTACTGGAGAAGATG
CTTCAGGAGCGGTATGCCCCCCGTACACAGACTCTTACACATAACTCTTGACACGACC
TGAGGGAAGCGGTGCGGGAGACAGTAGCCGAGGTTCTGCAGACGGTTCTGGAGCTGGACCGGACAGCCTTCTTGCAGGTGCACGGAGGCCGCAGGAACGG
CTACTACCCCCGCAAGCTGGAGACCACCTTCGGCCAGGTGGACCTGAAGGTCCCTAGGGATCGGGAATCTCGGTATTACCCGGCTTTCCTTAAGCCCTAC
GCCCGCCGCCTGGTGGACGTGGGGGAAGTAGCTGTGGCCTTGTACGCCGCCGGGGTCAGTCAGCGCAAGGCGGCCGAGATACTGAGCCTGCTCCTGGGCC
ACCGCTACTCCCACGAGACCCTGAGCGCCCTGACGGACGAGGTCCTGGAGGCGGCAGGAGCCTTCCGCACCCGGCCTTTGCCCGAGGAGATGGCCTTCGT
CTACCTGGACGGGCTTTCCCTAAAGGTCTTCAGGGAAGGAGAAGGGATCGTACGGGAAAGCGTGTATGTGGCCCTGGGCATCGCCCCTAATGGGGAGAGG
CGGGTCCTGGGGTTCTGGCTTTTGCCCACGGAGAGCGCCCTGGGATGGGAGGGGGTCCTGGGGGAGCTTTGGCAGCGGGGCCTGCGGCGGGTGTTGCTCT
TTGTCACCGACGGGCTGCCCGGGCTTCCTGAAGCGATCCGCAGGGTCTACCCTCAGGCGGAATGGCAGCGGTGCGTGGTGCACGGGGTGCGGTGGAGCCT
GTCCCAGGTGCGCTCCCGGGACCGGGCCCTGCTGGCGGAGGACCTGAGGCGGGTGTACGGGGCGGAGAGCCGGGAAGAAGCTCTTGGGGCCTTGGAGGAG
GTGAAGGCCGCCTGGGGTTCGCGGTACCCGGGGGTGGTGGGGCTTTGGGTACAGGATTCGGGGGCCTTCCTGCGCTTCTACGGGTACCCCAAGGTGCTTT
GGCCGTACCTGCGGAGCACCAACCTGATGGAGCGGTTTATCCGGGAGCTACGGCGGGGGACGAAGGTGCGGGACCACAAGTTTCCTAAGGAAGAGGCGGT
GTACAAGCTTCTTTACCTGGAGTCGGAGAGGCAGGAAGGGAGGTGGGCAGAACGGAAACTAAAGGGGTTCTCGGAGGTGAAGGAGGTACTGGAGAAGATG
CTTCAGGAGCGGTATGCCCCCCGTACACAGACTCTTACACATAACTCTTGACACGACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1221 bp | 406 aa | 31 | 1251 | + | No |
Chemistry : DDE
ORF sequence :
MFNRGAHLSTRRCPVDQDTLRILLREAVRETVAEVLQTVLELDRTAFLQVHGGRRNGYYPRKLETTFGQVDLKVPRDRESRYYPAFLKPYARRLVDVGEV
AVALYAAGVSQRKAAEILSLLLGHRYSHETLSALTDEVLEAAGAFRTRPLPEEMAFVYLDGLSLKVFREGEGIVRESVYVALGIAPNGERRVLGFWLLPT
ESALGWEGVLGELWQRGLRRVLLFVTDGLPGLPEAIRRVYPQAEWQRCVVHGVRWSLSQVRSRDRALLAEDLRRVYGAESREEALGALEEVKAAWGSRYP
GVVGLWVQDSGAFLRFYGYPKVLWPYLRSTNLMERFIRELRRGTKVRDHKFPKEEAVYKLLYLESERQEGRWAERKLKGFSEVKEVLEKMLQERYAPRTQ
TLTHNS
AVALYAAGVSQRKAAEILSLLLGHRYSHETLSALTDEVLEAAGAFRTRPLPEEMAFVYLDGLSLKVFREGEGIVRESVYVALGIAPNGERRVLGFWLLPT
ESALGWEGVLGELWQRGLRRVLLFVTDGLPGLPEAIRRVYPQAEWQRCVVHGVRWSLSQVRSRDRALLAEDLRRVYGAESREEALGALEEVKAAWGSRYP
GVVGLWVQDSGAFLRFYGYPKVLWPYLRSTNLMERFIRELRRGTKVRDHKFPKEEAVYKLLYLESERQEGRWAERKLKGFSEVKEVLEKMLQERYAPRTQ
TLTHNS
Blast result :
Comments
ISTth4 is 59% aa similar to IS654.
References
1] Masui,R., Kurokawa,K., Nakagawa,N., Tokunaga,F., Koyama,Y., Shibata,T., Oshima,T., Yokoyama,S., Yasunaga,T. and Kuramitsu,S. (2004) Direct submission GenBanK.