ISTth4

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_006462 ND Thermus thermophilus
Thermus thermophilus HB8
Thermus thermophilus HB8 plasmid pTT27
DNA section
IS Length : 1258 bp

Ends


IR Length : 28/34

IRL : GGTCGTGTAAGGATTTATGTGTAAGGATCCGTGTTTAATAGGGGGGCACA
IRR : GGTCGTGTCAAGAGTTATGTGTAAGAGTCTGTGTACGGGGGGCATACCGC

Insertion site


Left flankDirect repeatRight flankDR Length
TGGGCACCACGATGGCCACGAAGGTGAGGGGGCCGA8

DNA sequence

GGTCGTGTAAGGATTTATGTGTAAGGATCCGTGTTTAATAGGGGGGCACACCTTAGCACGAGGAGGTGCCCCGTGGACCAGGATACCTTGCGGATCTTGC
TGAGGGAAGCGGTGCGGGAGACAGTAGCCGAGGTTCTGCAGACGGTTCTGGAGCTGGACCGGACAGCCTTCTTGCAGGTGCACGGAGGCCGCAGGAACGG
CTACTACCCCCGCAAGCTGGAGACCACCTTCGGCCAGGTGGACCTGAAGGTCCCTAGGGATCGGGAATCTCGGTATTACCCGGCTTTCCTTAAGCCCTAC
GCCCGCCGCCTGGTGGACGTGGGGGAAGTAGCTGTGGCCTTGTACGCCGCCGGGGTCAGTCAGCGCAAGGCGGCCGAGATACTGAGCCTGCTCCTGGGCC
ACCGCTACTCCCACGAGACCCTGAGCGCCCTGACGGACGAGGTCCTGGAGGCGGCAGGAGCCTTCCGCACCCGGCCTTTGCCCGAGGAGATGGCCTTCGT
CTACCTGGACGGGCTTTCCCTAAAGGTCTTCAGGGAAGGAGAAGGGATCGTACGGGAAAGCGTGTATGTGGCCCTGGGCATCGCCCCTAATGGGGAGAGG
CGGGTCCTGGGGTTCTGGCTTTTGCCCACGGAGAGCGCCCTGGGATGGGAGGGGGTCCTGGGGGAGCTTTGGCAGCGGGGCCTGCGGCGGGTGTTGCTCT
TTGTCACCGACGGGCTGCCCGGGCTTCCTGAAGCGATCCGCAGGGTCTACCCTCAGGCGGAATGGCAGCGGTGCGTGGTGCACGGGGTGCGGTGGAGCCT
GTCCCAGGTGCGCTCCCGGGACCGGGCCCTGCTGGCGGAGGACCTGAGGCGGGTGTACGGGGCGGAGAGCCGGGAAGAAGCTCTTGGGGCCTTGGAGGAG
GTGAAGGCCGCCTGGGGTTCGCGGTACCCGGGGGTGGTGGGGCTTTGGGTACAGGATTCGGGGGCCTTCCTGCGCTTCTACGGGTACCCCAAGGTGCTTT
GGCCGTACCTGCGGAGCACCAACCTGATGGAGCGGTTTATCCGGGAGCTACGGCGGGGGACGAAGGTGCGGGACCACAAGTTTCCTAAGGAAGAGGCGGT
GTACAAGCTTCTTTACCTGGAGTCGGAGAGGCAGGAAGGGAGGTGGGCAGAACGGAAACTAAAGGGGTTCTCGGAGGTGAAGGAGGTACTGGAGAAGATG
CTTCAGGAGCGGTATGCCCCCCGTACACAGACTCTTACACATAACTCTTGACACGACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1221 bp406 aa311251+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MFNRGAHLSTRRCPVDQDTLRILLREAVRETVAEVLQTVLELDRTAFLQVHGGRRNGYYPRKLETTFGQVDLKVPRDRESRYYPAFLKPYARRLVDVGEV
AVALYAAGVSQRKAAEILSLLLGHRYSHETLSALTDEVLEAAGAFRTRPLPEEMAFVYLDGLSLKVFREGEGIVRESVYVALGIAPNGERRVLGFWLLPT
ESALGWEGVLGELWQRGLRRVLLFVTDGLPGLPEAIRRVYPQAEWQRCVVHGVRWSLSQVRSRDRALLAEDLRRVYGAESREEALGALEEVKAAWGSRYP
GVVGLWVQDSGAFLRFYGYPKVLWPYLRSTNLMERFIRELRRGTKVRDHKFPKEEAVYKLLYLESERQEGRWAERKLKGFSEVKEVLEKMLQERYAPRTQ
TLTHNS

 

Blast result :
Comments
ISTth4 is 59% aa similar to IS654.
References
1] Masui,R., Kurokawa,K., Nakagawa,N., Tokunaga,F., Koyama,Y., Shibata,T., Oshima,T., Yokoyama,S., Yasunaga,T. and Kuramitsu,S. (2004) Direct submission GenBanK.