ISBvu1
- Family IS1380
- Group IS942
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP000139 | ND | Bacteroides vulgatus | Bacteroides uniformis ATCC 8492 Bacteroides vulgatus ATCC 8482 Parabacteroides merdae ATCC 43184 |
DNA section
IS Length : 1600 bp
Ends
IR Length : 18
IRL : CCTAATTTCCGCAACACTTTTGTATAAGAATAATTTAAAGCAGTGAGTAG
IRR : CCTAATTTCCGCAAGCGAATGAAATCAGAGATTGCCATGCATTTTTTAGT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TCAACATAAA | TTTACCATTC | 0 |
DNA sequence
CCTAATTTCCGCAACACTTTTGTATAAGAATAATTTAAAGCAGTGAGTAGTAATATATTACTCAGTGCTTTGTCATGTTCGAAGATTTACTTAACTTCGT
GTTGCGTAAAAATCAAACCAATCTTCAGCAGACATGGCTAAAGTACAAATAAAATTCGATTCAATCACACCTTTTGGCGGAATATTTTCAATCATGGAGC
AATTTGATGCTCTTTTATCGGACGTAATCGACTCCACATTAGGACTGCGTAGCAGAACCTATGGTTACCAATACAGTGAAATCATCCGTTCTCTCATGTG
CGTATTCTTCTGTGGCGGCTCGTGCATTGAAGACATATCCACTCATCTCATGCCCCATCTTTCCCTGCATCCCAAACTTAAAACCTGCAGCGCAGACACG
ATTCTTCGCGCCATAAAAGAACTGACTACAGACAACATAACGTATTCATCTCCAGACTCAGGTAAATCATATGACTTCAATACAGCTGACACAATGACCG
AATTGTTGGTCAAGTCTCTCATTGCTACCGGAGAATTATGTCAGGAGCAGGGTTACGATCTGGATTTTGACCACCAGTTCATTGAAACGGAGAAGTATGA
TGCCAAACGTACATACAAGAAGTTCACAGGATACAGCCCGGGAGTGGCCGTTATAGGTGACCATATTGTCGGCATTGAAAATCGGGATGGCAACACGAAT
GTCCGGTTCTGTCAGCAGTGTACATTGGAAAGAATCTTCACCAGGCTGGAATGGAACGGCATTCATATAAATAGAGCCCGTATGGATTGTGGGTCGTGCT
CCGAAGAGATTGTAGATACCGTCAAGGCCCATTGCAAGTACTTCTATATCAGAGCCAACAGATGCTCCGCTTTTTATGAAGACATGTTCGCTCTCAGGGG
ATGGAAAGCTGAGGAAATCAACGGGATCAGGTTTGAGTTGAACTCGATTGTCGTAGAAAAATGGAAGGGGAAACCATACCGTCTTGTCATCCAAAGACAA
AGAAGAGCAGATGACATACGGGAGCTATGGGAAGGAGAATATACCTACCGGTGTATCCTTACCAATGATTTCGAATCCGATATAAGGGATGTCGTAGAGT
TCTATAACCTGCGCGGTGGGAAGGAAAGAATCCTCGATGACATGAACAACGGGTTTGGATGGAAACATTTGCCAAAGTCATTCATGGCAGAAAATGCAGT
ATACCTGCTGATGACTGCATTGATAAGGAACTTCTACAAAACGATCATCCGAAAATTAAACGTTAAGGATTTTGGCCTATCCATATCGAGTCGTATTAAG
ACTTTCGTTTTCAAATACATCTCGGTTGCCGCAAAGTGGATTAGGACTTCAAGGACGTACGTGCTAAACATCTATACCGAGAATCCAGCGTATAAAATAG
CCTTTCAACAGGATTTTGGCTAATCCTTATTCTAATGGTGGGTAATGCGTATTGCCTCAAGTCGCTTCATGGGGTAAGGGGAAGTTATGCAAAAGAGTGG
ACCTTTGGCACCTTCGTTTCACTAAAACACAATGTAAAGATAATAAACTCACTAAAAAATGCATGGCAATCTCTGATTTCATTCGCTTGCGGAAATTAGG
GTTGCGTAAAAATCAAACCAATCTTCAGCAGACATGGCTAAAGTACAAATAAAATTCGATTCAATCACACCTTTTGGCGGAATATTTTCAATCATGGAGC
AATTTGATGCTCTTTTATCGGACGTAATCGACTCCACATTAGGACTGCGTAGCAGAACCTATGGTTACCAATACAGTGAAATCATCCGTTCTCTCATGTG
CGTATTCTTCTGTGGCGGCTCGTGCATTGAAGACATATCCACTCATCTCATGCCCCATCTTTCCCTGCATCCCAAACTTAAAACCTGCAGCGCAGACACG
ATTCTTCGCGCCATAAAAGAACTGACTACAGACAACATAACGTATTCATCTCCAGACTCAGGTAAATCATATGACTTCAATACAGCTGACACAATGACCG
AATTGTTGGTCAAGTCTCTCATTGCTACCGGAGAATTATGTCAGGAGCAGGGTTACGATCTGGATTTTGACCACCAGTTCATTGAAACGGAGAAGTATGA
TGCCAAACGTACATACAAGAAGTTCACAGGATACAGCCCGGGAGTGGCCGTTATAGGTGACCATATTGTCGGCATTGAAAATCGGGATGGCAACACGAAT
GTCCGGTTCTGTCAGCAGTGTACATTGGAAAGAATCTTCACCAGGCTGGAATGGAACGGCATTCATATAAATAGAGCCCGTATGGATTGTGGGTCGTGCT
CCGAAGAGATTGTAGATACCGTCAAGGCCCATTGCAAGTACTTCTATATCAGAGCCAACAGATGCTCCGCTTTTTATGAAGACATGTTCGCTCTCAGGGG
ATGGAAAGCTGAGGAAATCAACGGGATCAGGTTTGAGTTGAACTCGATTGTCGTAGAAAAATGGAAGGGGAAACCATACCGTCTTGTCATCCAAAGACAA
AGAAGAGCAGATGACATACGGGAGCTATGGGAAGGAGAATATACCTACCGGTGTATCCTTACCAATGATTTCGAATCCGATATAAGGGATGTCGTAGAGT
TCTATAACCTGCGCGGTGGGAAGGAAAGAATCCTCGATGACATGAACAACGGGTTTGGATGGAAACATTTGCCAAAGTCATTCATGGCAGAAAATGCAGT
ATACCTGCTGATGACTGCATTGATAAGGAACTTCTACAAAACGATCATCCGAAAATTAAACGTTAAGGATTTTGGCCTATCCATATCGAGTCGTATTAAG
ACTTTCGTTTTCAAATACATCTCGGTTGCCGCAAAGTGGATTAGGACTTCAAGGACGTACGTGCTAAACATCTATACCGAGAATCCAGCGTATAAAATAG
CCTTTCAACAGGATTTTGGCTAATCCTTATTCTAATGGTGGGTAATGCGTATTGCCTCAAGTCGCTTCATGGGGTAAGGGGAAGTTATGCAAAAGAGTGG
ACCTTTGGCACCTTCGTTTCACTAAAACACAATGTAAAGATAATAAACTCACTAAAAAATGCATGGCAATCTCTGATTTCATTCGCTTGCGGAAATTAGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1290 bp | 429 aa | 134 | 1423 | + | No |
Chemistry : DDE
ORF sequence :
MAKVQIKFDSITPFGGIFSIMEQFDALLSDVIDSTLGLRSRTYGYQYSEIIRSLMCVFFCGGSCIEDISTHLMPHLSLHPKLKTCSADTILRAIKELTTD
NITYSSPDSGKSYDFNTADTMTELLVKSLIATGELCQEQGYDLDFDHQFIETEKYDAKRTYKKFTGYSPGVAVIGDHIVGIENRDGNTNVRFCQQCTLER
IFTRLEWNGIHINRARMDCGSCSEEIVDTVKAHCKYFYIRANRCSAFYEDMFALRGWKAEEINGIRFELNSIVVEKWKGKPYRLVIQRQRRADDIRELWE
GEYTYRCILTNDFESDIRDVVEFYNLRGGKERILDDMNNGFGWKHLPKSFMAENAVYLLMTALIRNFYKTIIRKLNVKDFGLSISSRIKTFVFKYISVAA
KWIRTSRTYVLNIYTENPAYKIAFQQDFG
NITYSSPDSGKSYDFNTADTMTELLVKSLIATGELCQEQGYDLDFDHQFIETEKYDAKRTYKKFTGYSPGVAVIGDHIVGIENRDGNTNVRFCQQCTLER
IFTRLEWNGIHINRARMDCGSCSEEIVDTVKAHCKYFYIRANRCSAFYEDMFALRGWKAEEINGIRFELNSIVVEKWKGKPYRLVIQRQRRADDIRELWE
GEYTYRCILTNDFESDIRDVVEFYNLRGGKERILDDMNNGFGWKHLPKSFMAENAVYLLMTALIRNFYKTIIRKLNVKDFGLSISSRIKTFVFKYISVAA
KWIRTSRTYVLNIYTENPAYKIAFQQDFG
Blast result :
Comments
ISBvu1 is 88% aa similar to IS1170.
References
1] Xu,J., Mahowald,M.A., Ley,R.E., Lozupone,C.A., Hamady,M., Martens,E.C., Henrissat,B., Coutinho,P.M., Minx,P., Latreille,P., Cordum,H., Van Brunt,A., Kim,K., Fulton,R.S., Fulton,L.A., Clifton,S.W., Wilson,R.K., Knight,R.D. and Gordon,J.I. (2007)(er) PLoS Biol. 5 (7), E156.
2] Xu,J., Minx,P., Latreille,P., Cordum,H., Van Brunt,A., Kim,K., Fulton,R., Fulton,L., Chinwalla,A., Clifton,S., Wilson,R., Mahowald,M., Henrissat,B., Martens,E., Ley,R. and Gordon,J. (2005) Direct Submission GenBank.
2] Xu,J., Minx,P., Latreille,P., Cordum,H., Van Brunt,A., Kim,K., Fulton,R., Fulton,L., Chinwalla,A., Clifton,S., Wilson,R., Mahowald,M., Henrissat,B., Martens,E., Ley,R. and Gordon,J. (2005) Direct Submission GenBank.