ISSlsp1

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009663 ND Sulfurovum sp.
Sulfurovum sp. NBC37-1
DNA section
IS Length : 1661 bp

Ends


IR Length : 29/35

IRL : CCCAAATCCGTAAATAGAAAATAACCATAAAAGAAGAAGTATCGTAAAAT
IRR : CCCAAATCCGTAAATAGCCCCAAAGTAATCATAAATTGAACTAAAATCAA

Insertion site


Left flankDirect repeatRight flankDR Length
AAAAAGCTACTTAAAAATTGGGAAA5
AAGCTGCAGGATGATCCTATTTCCT5
CAAAAAGCACTTTATGATCTTACTT5
TATAATACCCATTATGCAGGCACAT5

DNA sequence

CCCAAATCCGTAAATAGAAAATAACCATAAAAGAAGAAGTATCGTAAAATAGGGGAAAAGAAAGACAAAAGCGACACTAAACACTTTCACCCATTTGGTG
AAGCTTTTGCCAAGGAGTAAAAGTATGCCACAAGGTGTGTTAAATTTTTCTGTAGAGGGAACTAAAGAGTCACTTACTTCCAATGCCGGAACCATATTAT
TCGGTGAATATCTAAAAGCAACTAAAATCGATCAATTCTGTAATGCCTATCTACCTTTACCTCAAAGTAATCGAGGTTATATGCCATTTGAACACATGCA
ACCATTACTTCTTATGCTTCATAGCGGAGGAAGGGTCCTGGATGACTTACGTATGATTCATAAAGATAAAGCCATCAAAGAGACGTTGAAGATTAAACAT
ATACCTGTATCAGAGAGTGTAGGAAAATGGATCACACGTCACGGACTACATGGTATCTATGGTATTGAATCCATCAATCGTAAACTGTTGCGAAGACATT
TAAAAACGATAGATGAGCCTTTAGTACTTGATATTGATGCTTCGGTAATATTTTCACAAAAAAGTACAGCAGTGACAACTTATAAAATGCAAAGCGGATA
TATACCTATGATTGGTCATATCAATGGCGGATATGTGATTCACAGTGAATTTCGTTCAGGCAATATTGCGCCCGCAGATAATAATCTGACGTTTCTAAAA
AGATGTCGGGAACAATTACCCAAAGCAAAATCACTCTCTTTTTTTAGAGCAGATTCTGCTTCTTATCAGGCTGAACTTTTTAACCACTGCAATAATCATC
ATATCACCTATACCGTGGGCGCTAACTTAGATCATTCCGTCTACGCCAATATCAAAGAAATTAAAGAGTGGCAATCATTCCAAACCAAAGAAGGTACAGC
ACATCACCTTAAAGAAGAAGTAGCTGAGTTTATACATACCATGCAGCACACAGACCATGCCTTTAGACTGATTGTTGTCAAAAAGACAGTGACACCGGTA
CTTCCGGAGATCTGGGATATGTTGAGTATAGACGAAAAACTTGATCTTGCCAGAGAGCATTATTATGTCATCGCTACCAATGCAGATGAAAGCATGTCTG
CTCAGGATGTTGTTAGGTTTTATCGCAAGCGTGGAGATACAAGCGAGAACCGGATCAAAGAACTTAAAAATGGTTTCAATCTCAATTATCTTCCTTCATC
AAATTTTATCTCCAATGCATTTTACTTTCAGATAGGTGTACTGGCTTATAATCTCTTCATTCTTTTTAAACAAATACTGCAAAATAGCTGGCAAAAACAT
ACGGTTGCCACGATACGCTATAAGTTTTATCGTTTAGCAGGAAAGGTAGTGAAACACAGTAGGCAGACTATCTTGAAAGTTCAAAAAGAGTTTGTAGAAA
TATTTCACTCCATAAGAGAATGCATCTATAGGGTTTCACTGGAATGATACCCGTATAAAGTCACCAAAAACATCAATACGATAGAAACTTCAAACACTAG
AATAGTGCCTAAAAAAACAGCATTTTTAGCATAAACATGTCGGTGTGCTAAAAACAACAAGGTAATACGCAAATTTATGATGCATCTAATCTTTTAGCAT
AATATCTCTCGTTGATTTTAGTTCAATTTATGATTACTTTGGGGCTATTTACGGATTTGGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1323 bp440 aa1251447+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPQGVLNFSVEGTKESLTSNAGTILFGEYLKATKIDQFCNAYLPLPQSNRGYMPFEHMQPLLLMLHSGGRVLDDLRMIHKDKAIKETLKIKHIPVSESVG
KWITRHGLHGIYGIESINRKLLRRHLKTIDEPLVLDIDASVIFSQKSTAVTTYKMQSGYIPMIGHINGGYVIHSEFRSGNIAPADNNLTFLKRCREQLPK
AKSLSFFRADSASYQAELFNHCNNHHITYTVGANLDHSVYANIKEIKEWQSFQTKEGTAHHLKEEVAEFIHTMQHTDHAFRLIVVKKTVTPVLPEIWDML
SIDEKLDLAREHYYVIATNADESMSAQDVVRFYRKRGDTSENRIKELKNGFNLNYLPSSNFISNAFYFQIGVLAYNLFILFKQILQNSWQKHTVATIRYK
FYRLAGKVVKHSRQTILKVQKEFVEIFHSIRECIYRVSLE

 

Blast result :
Comments
ISSlsp1 is 42% aa similar to ISEcp1.
References
1] Nakagawa,S., Takaki,Y., Shimamura,S., Reysenbach,A.L., Takai,K. and Horikoshi,K. (2007) Proc. Natl. Acad. Sci. U.S.A. 104 (29), 12146-12150.
2] Nakagawa,S., Takai,K., Inagaki,F., Hirayama,H., Nunoura,T., Horikoshi,K. and Sako,Y. (2005) Environ. Microbiol. 7 (10), 1619-1632.