ISSlsp1
- Family IS1380
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_009663 | ND | Sulfurovum sp. | Sulfurovum sp. NBC37-1 |
DNA section
IS Length : 1661 bp
Ends
IR Length : 29/35
IRL : CCCAAATCCGTAAATAGAAAATAACCATAAAAGAAGAAGTATCGTAAAAT
IRR : CCCAAATCCGTAAATAGCCCCAAAGTAATCATAAATTGAACTAAAATCAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAAAAGCTAC | TTAAA | AATTGGGAAA | 5 |
AAGCTGCAGG | ATGAT | CCTATTTCCT | 5 |
CAAAAAGCAC | TTTAT | GATCTTACTT | 5 |
TATAATACCC | ATTAT | GCAGGCACAT | 5 |
DNA sequence
CCCAAATCCGTAAATAGAAAATAACCATAAAAGAAGAAGTATCGTAAAATAGGGGAAAAGAAAGACAAAAGCGACACTAAACACTTTCACCCATTTGGTG
AAGCTTTTGCCAAGGAGTAAAAGTATGCCACAAGGTGTGTTAAATTTTTCTGTAGAGGGAACTAAAGAGTCACTTACTTCCAATGCCGGAACCATATTAT
TCGGTGAATATCTAAAAGCAACTAAAATCGATCAATTCTGTAATGCCTATCTACCTTTACCTCAAAGTAATCGAGGTTATATGCCATTTGAACACATGCA
ACCATTACTTCTTATGCTTCATAGCGGAGGAAGGGTCCTGGATGACTTACGTATGATTCATAAAGATAAAGCCATCAAAGAGACGTTGAAGATTAAACAT
ATACCTGTATCAGAGAGTGTAGGAAAATGGATCACACGTCACGGACTACATGGTATCTATGGTATTGAATCCATCAATCGTAAACTGTTGCGAAGACATT
TAAAAACGATAGATGAGCCTTTAGTACTTGATATTGATGCTTCGGTAATATTTTCACAAAAAAGTACAGCAGTGACAACTTATAAAATGCAAAGCGGATA
TATACCTATGATTGGTCATATCAATGGCGGATATGTGATTCACAGTGAATTTCGTTCAGGCAATATTGCGCCCGCAGATAATAATCTGACGTTTCTAAAA
AGATGTCGGGAACAATTACCCAAAGCAAAATCACTCTCTTTTTTTAGAGCAGATTCTGCTTCTTATCAGGCTGAACTTTTTAACCACTGCAATAATCATC
ATATCACCTATACCGTGGGCGCTAACTTAGATCATTCCGTCTACGCCAATATCAAAGAAATTAAAGAGTGGCAATCATTCCAAACCAAAGAAGGTACAGC
ACATCACCTTAAAGAAGAAGTAGCTGAGTTTATACATACCATGCAGCACACAGACCATGCCTTTAGACTGATTGTTGTCAAAAAGACAGTGACACCGGTA
CTTCCGGAGATCTGGGATATGTTGAGTATAGACGAAAAACTTGATCTTGCCAGAGAGCATTATTATGTCATCGCTACCAATGCAGATGAAAGCATGTCTG
CTCAGGATGTTGTTAGGTTTTATCGCAAGCGTGGAGATACAAGCGAGAACCGGATCAAAGAACTTAAAAATGGTTTCAATCTCAATTATCTTCCTTCATC
AAATTTTATCTCCAATGCATTTTACTTTCAGATAGGTGTACTGGCTTATAATCTCTTCATTCTTTTTAAACAAATACTGCAAAATAGCTGGCAAAAACAT
ACGGTTGCCACGATACGCTATAAGTTTTATCGTTTAGCAGGAAAGGTAGTGAAACACAGTAGGCAGACTATCTTGAAAGTTCAAAAAGAGTTTGTAGAAA
TATTTCACTCCATAAGAGAATGCATCTATAGGGTTTCACTGGAATGATACCCGTATAAAGTCACCAAAAACATCAATACGATAGAAACTTCAAACACTAG
AATAGTGCCTAAAAAAACAGCATTTTTAGCATAAACATGTCGGTGTGCTAAAAACAACAAGGTAATACGCAAATTTATGATGCATCTAATCTTTTAGCAT
AATATCTCTCGTTGATTTTAGTTCAATTTATGATTACTTTGGGGCTATTTACGGATTTGGG
AAGCTTTTGCCAAGGAGTAAAAGTATGCCACAAGGTGTGTTAAATTTTTCTGTAGAGGGAACTAAAGAGTCACTTACTTCCAATGCCGGAACCATATTAT
TCGGTGAATATCTAAAAGCAACTAAAATCGATCAATTCTGTAATGCCTATCTACCTTTACCTCAAAGTAATCGAGGTTATATGCCATTTGAACACATGCA
ACCATTACTTCTTATGCTTCATAGCGGAGGAAGGGTCCTGGATGACTTACGTATGATTCATAAAGATAAAGCCATCAAAGAGACGTTGAAGATTAAACAT
ATACCTGTATCAGAGAGTGTAGGAAAATGGATCACACGTCACGGACTACATGGTATCTATGGTATTGAATCCATCAATCGTAAACTGTTGCGAAGACATT
TAAAAACGATAGATGAGCCTTTAGTACTTGATATTGATGCTTCGGTAATATTTTCACAAAAAAGTACAGCAGTGACAACTTATAAAATGCAAAGCGGATA
TATACCTATGATTGGTCATATCAATGGCGGATATGTGATTCACAGTGAATTTCGTTCAGGCAATATTGCGCCCGCAGATAATAATCTGACGTTTCTAAAA
AGATGTCGGGAACAATTACCCAAAGCAAAATCACTCTCTTTTTTTAGAGCAGATTCTGCTTCTTATCAGGCTGAACTTTTTAACCACTGCAATAATCATC
ATATCACCTATACCGTGGGCGCTAACTTAGATCATTCCGTCTACGCCAATATCAAAGAAATTAAAGAGTGGCAATCATTCCAAACCAAAGAAGGTACAGC
ACATCACCTTAAAGAAGAAGTAGCTGAGTTTATACATACCATGCAGCACACAGACCATGCCTTTAGACTGATTGTTGTCAAAAAGACAGTGACACCGGTA
CTTCCGGAGATCTGGGATATGTTGAGTATAGACGAAAAACTTGATCTTGCCAGAGAGCATTATTATGTCATCGCTACCAATGCAGATGAAAGCATGTCTG
CTCAGGATGTTGTTAGGTTTTATCGCAAGCGTGGAGATACAAGCGAGAACCGGATCAAAGAACTTAAAAATGGTTTCAATCTCAATTATCTTCCTTCATC
AAATTTTATCTCCAATGCATTTTACTTTCAGATAGGTGTACTGGCTTATAATCTCTTCATTCTTTTTAAACAAATACTGCAAAATAGCTGGCAAAAACAT
ACGGTTGCCACGATACGCTATAAGTTTTATCGTTTAGCAGGAAAGGTAGTGAAACACAGTAGGCAGACTATCTTGAAAGTTCAAAAAGAGTTTGTAGAAA
TATTTCACTCCATAAGAGAATGCATCTATAGGGTTTCACTGGAATGATACCCGTATAAAGTCACCAAAAACATCAATACGATAGAAACTTCAAACACTAG
AATAGTGCCTAAAAAAACAGCATTTTTAGCATAAACATGTCGGTGTGCTAAAAACAACAAGGTAATACGCAAATTTATGATGCATCTAATCTTTTAGCAT
AATATCTCTCGTTGATTTTAGTTCAATTTATGATTACTTTGGGGCTATTTACGGATTTGGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1323 bp | 440 aa | 125 | 1447 | + | No |
Chemistry : DDE
ORF sequence :
MPQGVLNFSVEGTKESLTSNAGTILFGEYLKATKIDQFCNAYLPLPQSNRGYMPFEHMQPLLLMLHSGGRVLDDLRMIHKDKAIKETLKIKHIPVSESVG
KWITRHGLHGIYGIESINRKLLRRHLKTIDEPLVLDIDASVIFSQKSTAVTTYKMQSGYIPMIGHINGGYVIHSEFRSGNIAPADNNLTFLKRCREQLPK
AKSLSFFRADSASYQAELFNHCNNHHITYTVGANLDHSVYANIKEIKEWQSFQTKEGTAHHLKEEVAEFIHTMQHTDHAFRLIVVKKTVTPVLPEIWDML
SIDEKLDLAREHYYVIATNADESMSAQDVVRFYRKRGDTSENRIKELKNGFNLNYLPSSNFISNAFYFQIGVLAYNLFILFKQILQNSWQKHTVATIRYK
FYRLAGKVVKHSRQTILKVQKEFVEIFHSIRECIYRVSLE
KWITRHGLHGIYGIESINRKLLRRHLKTIDEPLVLDIDASVIFSQKSTAVTTYKMQSGYIPMIGHINGGYVIHSEFRSGNIAPADNNLTFLKRCREQLPK
AKSLSFFRADSASYQAELFNHCNNHHITYTVGANLDHSVYANIKEIKEWQSFQTKEGTAHHLKEEVAEFIHTMQHTDHAFRLIVVKKTVTPVLPEIWDML
SIDEKLDLAREHYYVIATNADESMSAQDVVRFYRKRGDTSENRIKELKNGFNLNYLPSSNFISNAFYFQIGVLAYNLFILFKQILQNSWQKHTVATIRYK
FYRLAGKVVKHSRQTILKVQKEFVEIFHSIRECIYRVSLE
Blast result :
Comments
ISSlsp1 is 42% aa similar to ISEcp1.
References
1] Nakagawa,S., Takaki,Y., Shimamura,S., Reysenbach,A.L., Takai,K. and Horikoshi,K. (2007) Proc. Natl. Acad. Sci. U.S.A. 104 (29), 12146-12150.
2] Nakagawa,S., Takai,K., Inagaki,F., Hirayama,H., Nunoura,T., Horikoshi,K. and Sako,Y. (2005) Environ. Microbiol. 7 (10), 1619-1632.
2] Nakagawa,S., Takai,K., Inagaki,F., Hirayama,H., Nunoura,T., Horikoshi,K. and Sako,Y. (2005) Environ. Microbiol. 7 (10), 1619-1632.