ISTth7

  • Family IS5
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_005835 ND Thermus thermophilus
Thermus thermophilus HB8
Thermus thermophilus HB27 plasmid pTT27
Thermus thermophilus HB27
Thermus thermophilus HB8 plasmid pTT27
DNA section
IS Length : 1029 bp

Ends


IR Length : 14/16

IRL : GGGCTTGCCTTGCAAAGGTCAGGAGGACGGGTGTATATCTCTCTCCTGAT
IRR : GGGCTTGCCTAGTAAATCGCCTTGTACCCCGGAGGGGGCGGGAGAAGGGA

Insertion site


Left flankDirect repeatRight flankDR Length
ATAACCCCCCCCTCAACCCCCTTGACAAAGGGGCGC9

DNA sequence

GGGCTTGCCTTGCAAAGGTCAGGAGGACGGGTGTATATCTCTCTCCTGATGGGCAAGCGAGGCTTCCTTCGCAGGGAGGCAAGCCCCAAGGAGGTCCTGG
AACACTGCCTGCGCCTGGCCCGGGAGGTGGCCCCTCCCACCCCCAAAGGCAAGCGGGGCCGCCCCTGGCGCTACAGCCACGCCCTTTACCTGGCCCTCCT
TCTCTTCCGCGCCTTCTTCCACCTCACCTACCGCGAGACGGAGGCCTCACTCCAGGACCTGATGGAAGGCCCCTTCCCTTCCCACCAGTCCCTGGCCCGC
TACGCCCTCAAGCACCTGGACCCCAAACTCCTTGAGGCCCTCCTGGAGAGGCTTTCCCGGGAACTGGAGGCCCATCTCGCCCCGGAGTCCTCGCCGGAAG
GCGAAGCGGCTTCGGACGAGGCGCCGGCACACCTGGCGGCGCTTTCCCCCCCTCTACCTCATGGACACCACGGGGCTGGCCTACCGGAGCAAGGACCGGC
TTCTCCGCTTTCGTCGGGGGAAGGAGGTGCGGCGGGTGCGGGGGCACGCGCGGCTTCTGGCCCTGATGCGGTGGGATAGGGAGAGGCGGCTCTTGTGGCC
CTGGGGTGGAGTGGTGGGGGAGGGCTACGCCCCGGACCCCCGGCTTGGGGGGGAGGTGCTGAGGCGGTTTCCTCCTTCCCGGGGGTGGCTTTTGGCGGAC
GCGGGGTTTGACGGGAAGGAGGTGTGGGGGGTTTTGGGGGAGGCGGGGGTGCGGCCGGTGATCCGGCTTCGGGGCGGGGGCGAGGCCAGGGAGGAGGCGC
GGGTGCGGGCGCGGGAGGGGTGGGACCCCGAGGTGTACCGGTTTCGCGGGGTGGTGGAGGGGGTGTTTGGGGGGATGAAGACGCGGCTGGGTGGGGGGTA
CCTTTGGGAGCGGAAGCCTTGGACGGCCATGGCGCGGGCGCTTTTGGAGCTCATCGCCTACGGCCTTAGGGTTCTTCTCTCCCTTCTCCCGCCCCCTCCG
GGGTACAAGGCGATTTACTAGGCAAGCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
690 bp229 aa3321021+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRPSWRGFPGNWRPISPRSPRRKAKRLRTRRRHTWRRFPPLYLMDTTGLAYRSKDRLLRFRRGKEVRRVRGHARLLALMRWDRERRLLWPWGGVVGEGYA
PDPRLGGEVLRRFPPSRGWLLADAGFDGKEVWGVLGEAGVRPVIRLRGGGEAREEARVRAREGWDPEVYRFRGVVEGVFGGMKTRLGGGYLWERKPWTAM
ARALLELIAYGLRVLLSLLPPPPGYKAIY

 

Blast result :
Comments
References
1] Henne,A., Brueggemann,H., Raasch,C., Wiezer,A., Hartsch,T., Liesegang,H., Johann,A., Lienard,T., Gohl,O., Martinez-Arias,R., Jacobi,C., Starkuviene,V., Schlenczeck,S., Dencker,S., Huber,R., Klenk,H.-P., Overbeek,R., Kramer,W., Merkl,R., Gottschalk,G. and Fritz,H.-J. (2004) Nat. Biotechnol. 22 (5), 547-553