ISTth7
- Family IS5
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_005835 | ND | Thermus thermophilus | Thermus thermophilus HB8 Thermus thermophilus HB27 plasmid pTT27 Thermus thermophilus HB27 Thermus thermophilus HB8 plasmid pTT27 |
DNA section
IS Length : 1029 bp
Ends
IR Length : 14/16
IRL : GGGCTTGCCTTGCAAAGGTCAGGAGGACGGGTGTATATCTCTCTCCTGAT
IRR : GGGCTTGCCTAGTAAATCGCCTTGTACCCCGGAGGGGGCGGGAGAAGGGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATAACCCCCCCCT | CAACCCCCT | TGACAAAGGGGCGC | 9 |
DNA sequence
GGGCTTGCCTTGCAAAGGTCAGGAGGACGGGTGTATATCTCTCTCCTGATGGGCAAGCGAGGCTTCCTTCGCAGGGAGGCAAGCCCCAAGGAGGTCCTGG
AACACTGCCTGCGCCTGGCCCGGGAGGTGGCCCCTCCCACCCCCAAAGGCAAGCGGGGCCGCCCCTGGCGCTACAGCCACGCCCTTTACCTGGCCCTCCT
TCTCTTCCGCGCCTTCTTCCACCTCACCTACCGCGAGACGGAGGCCTCACTCCAGGACCTGATGGAAGGCCCCTTCCCTTCCCACCAGTCCCTGGCCCGC
TACGCCCTCAAGCACCTGGACCCCAAACTCCTTGAGGCCCTCCTGGAGAGGCTTTCCCGGGAACTGGAGGCCCATCTCGCCCCGGAGTCCTCGCCGGAAG
GCGAAGCGGCTTCGGACGAGGCGCCGGCACACCTGGCGGCGCTTTCCCCCCCTCTACCTCATGGACACCACGGGGCTGGCCTACCGGAGCAAGGACCGGC
TTCTCCGCTTTCGTCGGGGGAAGGAGGTGCGGCGGGTGCGGGGGCACGCGCGGCTTCTGGCCCTGATGCGGTGGGATAGGGAGAGGCGGCTCTTGTGGCC
CTGGGGTGGAGTGGTGGGGGAGGGCTACGCCCCGGACCCCCGGCTTGGGGGGGAGGTGCTGAGGCGGTTTCCTCCTTCCCGGGGGTGGCTTTTGGCGGAC
GCGGGGTTTGACGGGAAGGAGGTGTGGGGGGTTTTGGGGGAGGCGGGGGTGCGGCCGGTGATCCGGCTTCGGGGCGGGGGCGAGGCCAGGGAGGAGGCGC
GGGTGCGGGCGCGGGAGGGGTGGGACCCCGAGGTGTACCGGTTTCGCGGGGTGGTGGAGGGGGTGTTTGGGGGGATGAAGACGCGGCTGGGTGGGGGGTA
CCTTTGGGAGCGGAAGCCTTGGACGGCCATGGCGCGGGCGCTTTTGGAGCTCATCGCCTACGGCCTTAGGGTTCTTCTCTCCCTTCTCCCGCCCCCTCCG
GGGTACAAGGCGATTTACTAGGCAAGCCC
AACACTGCCTGCGCCTGGCCCGGGAGGTGGCCCCTCCCACCCCCAAAGGCAAGCGGGGCCGCCCCTGGCGCTACAGCCACGCCCTTTACCTGGCCCTCCT
TCTCTTCCGCGCCTTCTTCCACCTCACCTACCGCGAGACGGAGGCCTCACTCCAGGACCTGATGGAAGGCCCCTTCCCTTCCCACCAGTCCCTGGCCCGC
TACGCCCTCAAGCACCTGGACCCCAAACTCCTTGAGGCCCTCCTGGAGAGGCTTTCCCGGGAACTGGAGGCCCATCTCGCCCCGGAGTCCTCGCCGGAAG
GCGAAGCGGCTTCGGACGAGGCGCCGGCACACCTGGCGGCGCTTTCCCCCCCTCTACCTCATGGACACCACGGGGCTGGCCTACCGGAGCAAGGACCGGC
TTCTCCGCTTTCGTCGGGGGAAGGAGGTGCGGCGGGTGCGGGGGCACGCGCGGCTTCTGGCCCTGATGCGGTGGGATAGGGAGAGGCGGCTCTTGTGGCC
CTGGGGTGGAGTGGTGGGGGAGGGCTACGCCCCGGACCCCCGGCTTGGGGGGGAGGTGCTGAGGCGGTTTCCTCCTTCCCGGGGGTGGCTTTTGGCGGAC
GCGGGGTTTGACGGGAAGGAGGTGTGGGGGGTTTTGGGGGAGGCGGGGGTGCGGCCGGTGATCCGGCTTCGGGGCGGGGGCGAGGCCAGGGAGGAGGCGC
GGGTGCGGGCGCGGGAGGGGTGGGACCCCGAGGTGTACCGGTTTCGCGGGGTGGTGGAGGGGGTGTTTGGGGGGATGAAGACGCGGCTGGGTGGGGGGTA
CCTTTGGGAGCGGAAGCCTTGGACGGCCATGGCGCGGGCGCTTTTGGAGCTCATCGCCTACGGCCTTAGGGTTCTTCTCTCCCTTCTCCCGCCCCCTCCG
GGGTACAAGGCGATTTACTAGGCAAGCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
690 bp | 229 aa | 332 | 1021 | + | No |
Chemistry : DDE
ORF sequence :
MRPSWRGFPGNWRPISPRSPRRKAKRLRTRRRHTWRRFPPLYLMDTTGLAYRSKDRLLRFRRGKEVRRVRGHARLLALMRWDRERRLLWPWGGVVGEGYA
PDPRLGGEVLRRFPPSRGWLLADAGFDGKEVWGVLGEAGVRPVIRLRGGGEAREEARVRAREGWDPEVYRFRGVVEGVFGGMKTRLGGGYLWERKPWTAM
ARALLELIAYGLRVLLSLLPPPPGYKAIY
PDPRLGGEVLRRFPPSRGWLLADAGFDGKEVWGVLGEAGVRPVIRLRGGGEAREEARVRAREGWDPEVYRFRGVVEGVFGGMKTRLGGGYLWERKPWTAM
ARALLELIAYGLRVLLSLLPPPPGYKAIY
Blast result :
Comments
References
1] Henne,A., Brueggemann,H., Raasch,C., Wiezer,A., Hartsch,T., Liesegang,H., Johann,A., Lienard,T., Gohl,O., Martinez-Arias,R., Jacobi,C., Starkuviene,V., Schlenczeck,S., Dencker,S., Huber,R., Klenk,H.-P., Overbeek,R., Kramer,W., Merkl,R., Gottschalk,G. and Fritz,H.-J. (2004) Nat. Biotechnol. 22 (5), 547-553