ISDra9
- Family IS200/IS605
- Group IS200
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_001263 | ND | Deinococcus radiodurans | Deinococcus radiodurans R1 chromosome 1 |
DNA section
IS Length : 580 bp
Ends
Left end : CTCTCCGAACACGCTGGTCCTAAGCCATGCACTTTAGTGCAAGTCTTTCAGAAACCTCGTGCCTGAGGGCGTCGGTTAGGCTGAGCAGATGGGGCAGCAG II struct. : Yes
Right end : TCACCCCTCCGACCCAGATGATTCAGCGTTCATCCTGGAGGATTGAAGGCGGCTTTAGCCGCTCCGCAACCCCTGCACTTTCAGTGCAGGGTCGTTTAGT II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CGGGGGCGAGAGGGCC | TTTA | TCAGGGCTTG | tagt |
DNA sequence
CTCTCCGAACACGCTGGTCCTAAGCCATGCACTTTAGTGCAAGTCTTTCAGAAACCTCGTGCCTGAGGGCGTCGGTTAGGCTGAGCAGATGGGGCAGCAG
CGGTCTGGGAGTCATACGGTCAGCCGACTGACGCTACATGTTGTGTGGGCAACGAAGTATCGATATCACGTCTTGGTGGGAGAGATCAAACCGCGATGTC
GGGAGCTGCTGATCCAAATCTGCAAGGCAGAAGACGTGCGGATTCTCAAGGGGGTGGTGAGCAAGGATCACGTCCACATGCACGTGGAATATCCGCCGAG
GCTCGCCGTCAGCGACCTGGTGAAGCGATTGAAGGGAAGGACATCGCGGCGGCTGCAACAGGAATTCCCCCACCTCGAAAAGCGCTACTGGGGCAAGCAC
TTTTGGGGCGTCGGGTATGGTGCGTGGAGTACGGGGACTATCACGGAGGCGATGGTGCAGGAGTACTTGGAGCATCATCGTCACCCCTCCGACCCAGATG
ATTCAGCGTTCATCCTGGAGGATTGAAGGCGGCTTTAGCCGCTCCGCAACCCCTGCACTTTCAGTGCAGGGTCGTTTAGT
CGGTCTGGGAGTCATACGGTCAGCCGACTGACGCTACATGTTGTGTGGGCAACGAAGTATCGATATCACGTCTTGGTGGGAGAGATCAAACCGCGATGTC
GGGAGCTGCTGATCCAAATCTGCAAGGCAGAAGACGTGCGGATTCTCAAGGGGGTGGTGAGCAAGGATCACGTCCACATGCACGTGGAATATCCGCCGAG
GCTCGCCGTCAGCGACCTGGTGAAGCGATTGAAGGGAAGGACATCGCGGCGGCTGCAACAGGAATTCCCCCACCTCGAAAAGCGCTACTGGGGCAAGCAC
TTTTGGGGCGTCGGGTATGGTGCGTGGAGTACGGGGACTATCACGGAGGCGATGGTGCAGGAGTACTTGGAGCATCATCGTCACCCCTCCGACCCAGATG
ATTCAGCGTTCATCCTGGAGGATTGAAGGCGGCTTTAGCCGCTCCGCAACCCCTGCACTTTCAGTGCAGGGTCGTTTAGT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
438 bp | 145 aa | 89 | 526 | + | No |
Chemistry : Y1
ORF sequence :
MGQQRSGSHTVSRLTLHVVWATKYRYHVLVGEIKPRCRELLIQICKAEDVRILKGVVSKDHVHMHVEYPPRLAVSDLVKRLKGRTSRRLQQEFPHLEKRY
WGKHFWGVGYGAWSTGTITEAMVQEYLEHHRHPSDPDDSAFILED
WGKHFWGVGYGAWSTGTITEAMVQEYLEHHRHPSDPDDSAFILED
Blast result :
Comments
ISDra9 is 73% aa similar to ISPlu2.
References
1] White,O., Eisen,J.A., Heidelberg,J.F., Hickey,E.K., Peterson,J.D., Dodson,R.J., Haft,D.H., Gwinn,M.L., Nelson,W.C., Richardson,D.L., Moffat,K.S., Qin,H., Jiang,L., Pamphile,W., Crosby,M., Shen,M., Vamathevan,J.J., Lam,P., McDonald,L., Utterback,T., Zalewski,C., Makarova,K.S., Aravind,L., Daly,M.J., Minton,K.W., Fleischmann,R.D., Ketchum,K.A., Nelson,K.E., Salzberg,S., Smith,H.O., Venter,J.C. and Fraser,C.M.(1999)Science 286 (5444), 1571-1577 [
[2] De Palmenaer D, Siguier P, Mahillon J (2008) BMC Evol Biol , 8(1):18
[2] De Palmenaer D, Siguier P, Mahillon J (2008) BMC Evol Biol , 8(1):18