ISDra9

  • Family IS200/IS605
  • Group IS200
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_001263 ND Deinococcus radiodurans
Deinococcus radiodurans R1 chromosome 1
DNA section
IS Length : 580 bp

Ends


Left end : CTCTCCGAACACGCTGGTCCTAAGCCATGCACTTTAGTGCAAGTCTTTCAGAAACCTCGTGCCTGAGGGCGTCGGTTAGGCTGAGCAGATGGGGCAGCAG II struct. : Yes
Right end : TCACCCCTCCGACCCAGATGATTCAGCGTTCATCCTGGAGGATTGAAGGCGGCTTTAGCCGCTCCGCAACCCCTGCACTTTCAGTGCAGGGTCGTTTAGT II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CGGGGGCGAGAGGGCCTTTATCAGGGCTTGtagt

DNA sequence

CTCTCCGAACACGCTGGTCCTAAGCCATGCACTTTAGTGCAAGTCTTTCAGAAACCTCGTGCCTGAGGGCGTCGGTTAGGCTGAGCAGATGGGGCAGCAG
CGGTCTGGGAGTCATACGGTCAGCCGACTGACGCTACATGTTGTGTGGGCAACGAAGTATCGATATCACGTCTTGGTGGGAGAGATCAAACCGCGATGTC
GGGAGCTGCTGATCCAAATCTGCAAGGCAGAAGACGTGCGGATTCTCAAGGGGGTGGTGAGCAAGGATCACGTCCACATGCACGTGGAATATCCGCCGAG
GCTCGCCGTCAGCGACCTGGTGAAGCGATTGAAGGGAAGGACATCGCGGCGGCTGCAACAGGAATTCCCCCACCTCGAAAAGCGCTACTGGGGCAAGCAC
TTTTGGGGCGTCGGGTATGGTGCGTGGAGTACGGGGACTATCACGGAGGCGATGGTGCAGGAGTACTTGGAGCATCATCGTCACCCCTCCGACCCAGATG
ATTCAGCGTTCATCCTGGAGGATTGAAGGCGGCTTTAGCCGCTCCGCAACCCCTGCACTTTCAGTGCAGGGTCGTTTAGT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
438 bp145 aa89526+No
ORF function : Transposase
Chemistry : Y1

ORF sequence :

MGQQRSGSHTVSRLTLHVVWATKYRYHVLVGEIKPRCRELLIQICKAEDVRILKGVVSKDHVHMHVEYPPRLAVSDLVKRLKGRTSRRLQQEFPHLEKRY
WGKHFWGVGYGAWSTGTITEAMVQEYLEHHRHPSDPDDSAFILED

 

Blast result :
Comments
ISDra9 is 73% aa similar to ISPlu2.
References
1] White,O., Eisen,J.A., Heidelberg,J.F., Hickey,E.K., Peterson,J.D., Dodson,R.J., Haft,D.H., Gwinn,M.L., Nelson,W.C., Richardson,D.L., Moffat,K.S., Qin,H., Jiang,L., Pamphile,W., Crosby,M., Shen,M., Vamathevan,J.J., Lam,P., McDonald,L., Utterback,T., Zalewski,C., Makarova,K.S., Aravind,L., Daly,M.J., Minton,K.W., Fleischmann,R.D., Ketchum,K.A., Nelson,K.E., Salzberg,S., Smith,H.O., Venter,J.C. and Fraser,C.M.(1999)Science 286 (5444), 1571-1577 [
[2] De Palmenaer D, Siguier P, Mahillon J (2008) BMC Evol Biol , 8(1):18