ISRme10

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_006466 ND Ralstonia metallidurans
Ralstonia metallidurans CH34 plasmid pMOL30
DNA section
IS Length : 1529 bp

Ends


IR Length : 15/18

IRL : TCCTTCCTTCAGCCCCTTTAGCATGGCCGGGTCCTTGACCGGGAAAGCCA
IRR : TCCTTCCTGCGTAGCCCCGTCGAGACGGGTTCACCGGGCGCTTACTGTCG

Insertion site


Left flankDirect repeatRight flankDR Length
AGACCTGGTCCGGAAGCAGT0

DNA sequence

TCCTTCCTTCAGCCCCTTTAGCATGGCCGGGTCCTTGACCGGGAAAGCCATGGTCATGGCAGACATGCCCAGGTTGGCGATGGGACCATGCTTGAGTGTG
ATTTTTCCAGTTGCCGCGTCAATCTTCCGCACTTCCGCGGGCACAGGCTGAGGCGCCTTCTTTGCACCCGCCGACGGCGTCATGTCCATGCCTTCCATCG
TTGCGGCGGTGCCGGGTAGCGCAGCACCTATAGGGGGCGGTCTCTAGAATGAAGTGCAACACCCTGATGTTAGGGTGTTGGGATGGGACAAAGCTACAGT
CAACTGGGTATCGAAGAGCGTAACTGTAGTCATCGCCTGCTAAACGAGGGGTGCAGCCTGCGTCAGGTCGCGAGAGTGGCGGGGCGAAGTCCGTCGACTA
TTTCACGCGAGGTTGCCCGGGCCGGAGGTCATCGTTCCTACGATGCTGCGAGCGCGCAGGGTATGGCGCTGAGAAGGCGTCGACGTGGGCCGCGCAAGCT
GGCAGCAGGCACGGCGCTGCTGAAGCTGGTGAGAGCATGGCTGCGCGTGGGCTATTCACCGCAACAGATTGCAGGCAGACTCCGGCGCATGTATGCCCAC
CAGCCGGAGTTCCATGTGTCCCACGAGACGATCTACTGCGTGATCTACGCCACGCCGCGCGGTGAGCTGCGCCGCGAGCTAATCGGCAGCCTGCGTAAGG
CCCACAAGGAGCGTCGTTCACGGGGCGCGGGGAACGATCGCCGAGGCAAGCTGCAGGATATGCGCTCGATCCACGAGCGGCCCGAGGAGGTGTTCGAGCG
GCTGGTGCCTGGGCATTGGGAAGGCGACCTGATCAAGGGCGCGGGCAATCGCAGCGCAGTGGCGACGCTGGTGGAACGCAAGACGCGCTTCGTGGTGTTG
GCGAAGATGGACGGTTGCGGGGCGGAGGCAGCGCTGGAGGCGTTGACCAAGAAGTTCCGTCGGGTGCCGCTGGCGCTTCGCAAGAGCCTGACCTACGACC
AGGGCAAAGAGATGGCGCATCACGCAGAGCTGACCAGGCGAGTCAGTACCGAAGTGTTCTTTGCCGACCCGCACAGTCCGTGGCAGAGGCCAAGCAACGA
GAACATGAACGGACTGGTTCGGGAGTATCTACCGAAAGGCGACGATCTATCGGTCTTCTCGCAGGGGTACTTGAACGGAGTCCCGAAGGCGCTGAATTAT
CGCCCTCGGGCGGTTCTCGACTTCGCCACTCCCGCCGAAGCCATGGCCGAAGAGATCAACAAATTACGAACTGGTGTTGCATCTCAGACTTGAAACCGCT
GTCACGGCCAGCGCTGCCATCTTCTCGCGTTCCGTACTCACGGCACCCTCCTTAATAAGAGATTCAGGTAGCGAATGCCTGGCCGAATTGCCGGGCCCGC
TTGACGTCATCGGTATGCAAGTAGATGGACGTGGTCGAAATTGAGGCGTGGCGCAGGTTGTCGCGCACAGCGCTCAGTTCGACAGTAAGCGCCCGGTGAA
CCCGTCTCGACGGGGCTACGCAGGAAGGA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1011 bp336 aa2831293+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MGQSYSQLGIEERNCSHRLLNEGCSLRQVARVAGRSPSTISREVARAGGHRSYDAASAQGMALRRRRRGPRKLAAGTALLKLVRAWLRVGYSPQQIAGRL
RRMYAHQPEFHVSHETIYCVIYATPRGELRRELIGSLRKAHKERRSRGAGNDRRGKLQDMRSIHERPEEVFERLVPGHWEGDLIKGAGNRSAVATLVERK
TRFVVLAKMDGCGAEAALEALTKKFRRVPLALRKSLTYDQGKEMAHHAELTRRVSTEVFFADPHSPWQRPSNENMNGLVREYLPKGDDLSVFSQGYLNGV
PKALNYRPRAVLDFATPAEAMAEEINKLRTGVASQT

 

Blast result :
Comments
ISRme10 is 69% aa similar to IST3091.
References
1] Borremans,B., Hobman,J.L., Provoost,A., Brown,N.L. and van Der Lelie,D.(2001) J. Bacteriol. 183 (19), 5651-5658.