ISPsy25
- Family IS630
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_005773 | ND | Pseudomonas syringae | Pseudomonas syringae pv. actinidiae Pseudomonas syringae pv. phaseolicola Pseudomonas syringae pv. phaseolicola 1448A Pseudomonas syringae pv. phaseolicola NPS3121 |
DNA section
IS Length : 1171 bp
Ends
IR Length : 19/23
IRL : GTGTGCTGTTCGCAAAATAGCTTTTCGTTAGTCTCGGCTACACTTCAGAT
IRR : GTGTGCTGTTTTCGAAATAACTTAATTTTCTTGTGCGGTTTCAAGCGCCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGTTATCTTC | TA | GGCATGCCGG | 2 |
DNA sequence
GTGTGCTGTTCGCAAAATAGCTTTTCGTTAGTCTCGGCTACACTTCAGATGTCATTCCAGCCTTGGAGAGCTTATCGTGAGCGCTCTGGACATCACGCTT
AGCCATGAAGAAACGATCGAACTCAAACGGCGCGTTCGCTCTGCCACCATCCCTCAGCGAGAGGGTCGGCGAGCACGCATAATCCTGCTGGCTGCCGAAG
GCGAAACCCGAGACAACATTGCGCGGTTGACGGATTTTTCCTGCCCAACGATCACTCTCTGGTGCCAGCGTTTCCGGGCACGTCGACTGGACGGATTGGT
CGACCAACCTGGGCGTGGACGCAAGTCGTCTTTGCCTGAGGAAACGGTTCGCCGGGTCTTGGAACAAGTCACCCGACCCCGCATCGGAGAGCCGCGCTGG
AGCTGTCGGAGCATGGCAAGGGCAGCGGGAATTTCCTCGACCACCGTCCATAAACTGTGGGCTGCCAACGATTTAAAGCCTCACCTGACACGCACATTCA
AGCTGTCCAACGATCCGCAGTTTGACGAGAAATTCTGGGATGTGATCGGGCTTTATCTGGCCCCACCGGATAAGGCTTTGGTGTTGTGCTGTGATGAGAA
AAGCCAGGTTCAGGCGTTGGAGCGAACACAGCCGGGCTTACCTTTGGGCATCGGTCATATCCAGACTAAATCCCATGATTACACCCGTCATGGCACGGTC
ACGTTATTCGCCGCACTGGATTACCTCCAAGGGAAATTGATCAGCAGCATCGAGCGTCAGCACCGGCATCAAGAGTGGCTGGCCTTTCTCAAGAAGATCA
ATAAAGAAACGCCCAAGCACCTCCAGCTTCATCTGATCGTCGATAACTATGCGACCCACAAGCATGCTGCGGTGAAAGCCTGGCTGGCGAAGCATCCGCG
TTTTCATATTCATTTCACCCCAACCTCCAGCTCCTGGATGAACATGGTTGAGCGCTTCTTTCGAGACATCACCGTGTACTTGCGCGACGGCAGCTTCGCC
TCCGTGCGAGAGTTAGAAAGCTCCATCACAACGTTTATGGCGTTACGAAATGCTCGGCCGACCCGGTGCGTTTGGAACGCAAAGGGAGAGGAGATTTTGA
ACAAAATTCAACGTGCGCGTGAGGCGCTTGAAACCGCACAAGAAAATTAAGTTATTTCGAAAACAGCACAC
AGCCATGAAGAAACGATCGAACTCAAACGGCGCGTTCGCTCTGCCACCATCCCTCAGCGAGAGGGTCGGCGAGCACGCATAATCCTGCTGGCTGCCGAAG
GCGAAACCCGAGACAACATTGCGCGGTTGACGGATTTTTCCTGCCCAACGATCACTCTCTGGTGCCAGCGTTTCCGGGCACGTCGACTGGACGGATTGGT
CGACCAACCTGGGCGTGGACGCAAGTCGTCTTTGCCTGAGGAAACGGTTCGCCGGGTCTTGGAACAAGTCACCCGACCCCGCATCGGAGAGCCGCGCTGG
AGCTGTCGGAGCATGGCAAGGGCAGCGGGAATTTCCTCGACCACCGTCCATAAACTGTGGGCTGCCAACGATTTAAAGCCTCACCTGACACGCACATTCA
AGCTGTCCAACGATCCGCAGTTTGACGAGAAATTCTGGGATGTGATCGGGCTTTATCTGGCCCCACCGGATAAGGCTTTGGTGTTGTGCTGTGATGAGAA
AAGCCAGGTTCAGGCGTTGGAGCGAACACAGCCGGGCTTACCTTTGGGCATCGGTCATATCCAGACTAAATCCCATGATTACACCCGTCATGGCACGGTC
ACGTTATTCGCCGCACTGGATTACCTCCAAGGGAAATTGATCAGCAGCATCGAGCGTCAGCACCGGCATCAAGAGTGGCTGGCCTTTCTCAAGAAGATCA
ATAAAGAAACGCCCAAGCACCTCCAGCTTCATCTGATCGTCGATAACTATGCGACCCACAAGCATGCTGCGGTGAAAGCCTGGCTGGCGAAGCATCCGCG
TTTTCATATTCATTTCACCCCAACCTCCAGCTCCTGGATGAACATGGTTGAGCGCTTCTTTCGAGACATCACCGTGTACTTGCGCGACGGCAGCTTCGCC
TCCGTGCGAGAGTTAGAAAGCTCCATCACAACGTTTATGGCGTTACGAAATGCTCGGCCGACCCGGTGCGTTTGGAACGCAAAGGGAGAGGAGATTTTGA
ACAAAATTCAACGTGCGCGTGAGGCGCTTGAAACCGCACAAGAAAATTAAGTTATTTCGAAAACAGCACAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1074 bp | 357 aa | 77 | 1150 | + | No |
Chemistry : DDE
ORF sequence :
MSALDITLSHEETIELKRRVRSATIPQREGRRARIILLAAEGETRDNIARLTDFSCPTITLWCQRFRARRLDGLVDQPGRGRKSSLPEETVRRVLEQVTR
PRIGEPRWSCRSMARAAGISSTTVHKLWAANDLKPHLTRTFKLSNDPQFDEKFWDVIGLYLAPPDKALVLCCDEKSQVQALERTQPGLPLGIGHIQTKSH
DYTRHGTVTLFAALDYLQGKLISSIERQHRHQEWLAFLKKINKETPKHLQLHLIVDNYATHKHAAVKAWLAKHPRFHIHFTPTSSSWMNMVERFFRDITV
YLRDGSFASVRELESSITTFMALRNARPTRCVWNAKGEEILNKIQRAREALETAQEN
PRIGEPRWSCRSMARAAGISSTTVHKLWAANDLKPHLTRTFKLSNDPQFDEKFWDVIGLYLAPPDKALVLCCDEKSQVQALERTQPGLPLGIGHIQTKSH
DYTRHGTVTLFAALDYLQGKLISSIERQHRHQEWLAFLKKINKETPKHLQLHLIVDNYATHKHAAVKAWLAKHPRFHIHFTPTSSSWMNMVERFFRDITV
YLRDGSFASVRELESSITTFMALRNARPTRCVWNAKGEEILNKIQRAREALETAQEN
Blast result :
Comments
ISPsy25 is 90% aa similar to ISPpu1.
Found in argK-tox gene cluster and phaseolotoxin synthesis gene cluster.
Found in argK-tox gene cluster and phaseolotoxin synthesis gene cluster.
References
1]Joardar,V., Lindeberg,M., Jackson,R.W., Selengut,J., Dodson,R., Brinkac,L.M., Daugherty,S.C., Deboy,R., Durkin,A.S., Giglio,M.G., Madupu,R., Nelson,W.C., Rosovitz,M.J., Sullivan,S., Crabtree,J., Creasy,T., Davidsen,T., Haft,D.H., Zafar,N., Zhou,L., Halpin,R., Holley,T., Khouri,H., Feldblyum,T., White,O., Fraser,C.M., Chatterjee,A.K., Cartinhour,S., Schneider,D.J., Mansfield,J., Collmer,A. and Buell,C.R. (2005)J. Bacteriol. 187 (18), 6488-6498.