ISPsy25

  • Family IS630
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_005773 ND Pseudomonas syringae
Pseudomonas syringae pv. actinidiae
Pseudomonas syringae pv. phaseolicola
Pseudomonas syringae pv. phaseolicola 1448A
Pseudomonas syringae pv. phaseolicola NPS3121
DNA section
IS Length : 1171 bp

Ends


IR Length : 19/23

IRL : GTGTGCTGTTCGCAAAATAGCTTTTCGTTAGTCTCGGCTACACTTCAGAT
IRR : GTGTGCTGTTTTCGAAATAACTTAATTTTCTTGTGCGGTTTCAAGCGCCT

Insertion site


Left flankDirect repeatRight flankDR Length
GGTTATCTTCTAGGCATGCCGG2

DNA sequence

GTGTGCTGTTCGCAAAATAGCTTTTCGTTAGTCTCGGCTACACTTCAGATGTCATTCCAGCCTTGGAGAGCTTATCGTGAGCGCTCTGGACATCACGCTT
AGCCATGAAGAAACGATCGAACTCAAACGGCGCGTTCGCTCTGCCACCATCCCTCAGCGAGAGGGTCGGCGAGCACGCATAATCCTGCTGGCTGCCGAAG
GCGAAACCCGAGACAACATTGCGCGGTTGACGGATTTTTCCTGCCCAACGATCACTCTCTGGTGCCAGCGTTTCCGGGCACGTCGACTGGACGGATTGGT
CGACCAACCTGGGCGTGGACGCAAGTCGTCTTTGCCTGAGGAAACGGTTCGCCGGGTCTTGGAACAAGTCACCCGACCCCGCATCGGAGAGCCGCGCTGG
AGCTGTCGGAGCATGGCAAGGGCAGCGGGAATTTCCTCGACCACCGTCCATAAACTGTGGGCTGCCAACGATTTAAAGCCTCACCTGACACGCACATTCA
AGCTGTCCAACGATCCGCAGTTTGACGAGAAATTCTGGGATGTGATCGGGCTTTATCTGGCCCCACCGGATAAGGCTTTGGTGTTGTGCTGTGATGAGAA
AAGCCAGGTTCAGGCGTTGGAGCGAACACAGCCGGGCTTACCTTTGGGCATCGGTCATATCCAGACTAAATCCCATGATTACACCCGTCATGGCACGGTC
ACGTTATTCGCCGCACTGGATTACCTCCAAGGGAAATTGATCAGCAGCATCGAGCGTCAGCACCGGCATCAAGAGTGGCTGGCCTTTCTCAAGAAGATCA
ATAAAGAAACGCCCAAGCACCTCCAGCTTCATCTGATCGTCGATAACTATGCGACCCACAAGCATGCTGCGGTGAAAGCCTGGCTGGCGAAGCATCCGCG
TTTTCATATTCATTTCACCCCAACCTCCAGCTCCTGGATGAACATGGTTGAGCGCTTCTTTCGAGACATCACCGTGTACTTGCGCGACGGCAGCTTCGCC
TCCGTGCGAGAGTTAGAAAGCTCCATCACAACGTTTATGGCGTTACGAAATGCTCGGCCGACCCGGTGCGTTTGGAACGCAAAGGGAGAGGAGATTTTGA
ACAAAATTCAACGTGCGCGTGAGGCGCTTGAAACCGCACAAGAAAATTAAGTTATTTCGAAAACAGCACAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1074 bp357 aa771150+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSALDITLSHEETIELKRRVRSATIPQREGRRARIILLAAEGETRDNIARLTDFSCPTITLWCQRFRARRLDGLVDQPGRGRKSSLPEETVRRVLEQVTR
PRIGEPRWSCRSMARAAGISSTTVHKLWAANDLKPHLTRTFKLSNDPQFDEKFWDVIGLYLAPPDKALVLCCDEKSQVQALERTQPGLPLGIGHIQTKSH
DYTRHGTVTLFAALDYLQGKLISSIERQHRHQEWLAFLKKINKETPKHLQLHLIVDNYATHKHAAVKAWLAKHPRFHIHFTPTSSSWMNMVERFFRDITV
YLRDGSFASVRELESSITTFMALRNARPTRCVWNAKGEEILNKIQRAREALETAQEN

 

Blast result :
Comments
ISPsy25 is 90% aa similar to ISPpu1.
Found in argK-tox gene cluster and phaseolotoxin synthesis gene cluster.
References
1]Joardar,V., Lindeberg,M., Jackson,R.W., Selengut,J., Dodson,R., Brinkac,L.M., Daugherty,S.C., Deboy,R., Durkin,A.S., Giglio,M.G., Madupu,R., Nelson,W.C., Rosovitz,M.J., Sullivan,S., Crabtree,J., Creasy,T., Davidsen,T., Haft,D.H., Zafar,N., Zhou,L., Halpin,R., Holley,T., Khouri,H., Feldblyum,T., White,O., Fraser,C.M., Chatterjee,A.K., Cartinhour,S., Schneider,D.J., Mansfield,J., Collmer,A. and Buell,C.R. (2005)J. Bacteriol. 187 (18), 6488-6498.