ISPsy24
- Family IS3
- Group IS3
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_005773 | ND | Pseudomonas syringae | Pseudomonas syringae pv. phaseolicola 1448A |
DNA section
IS Length : 1235 bp
Ends
IR Length : 25/33
IRL : TGTAGTGGTCTAATGAAACCGGACACCCATTTAGGCGAGAATGCTCGCCA
IRR : TGTAGTGGTCAACTGATCCCGGACACGACGTTAAGTCTTTTTTCGGACTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTGTAGATCC | TAAC | GACCCAAATG | 4 |
CTCCACAGAG | AGG | AACGAATCTG | 3 |
DNA sequence
TGTAGTGGTCTAATGAAACCGGACACCCATTTAGGCGAGAATGCTCGCCAGATAGAGGTGTCTGATGACCAAACAACGCCGTACCTTTTCCGCTGAATTC
AAACGCGAGGCCGCAGGCCTCGTGCTCGATCAAGGCTATAGCCACATTGAGGCCTCTCGCTCGCTGGGAGTTGTCGAGTCCGCACTGCGTCGCTGGGTTA
ACCAGCTTCAACAGGAGCGCAACGGTGTCACTCCACAGAGCAAAGCCCTGACGCCCGAGCAGCAGAAAATTCAGGAGCTGGAAGCCCGGATTGCCCGTCT
TGAGCGGGAGAAATCCATTTTAAAAAAGGCTACCGCGCTCTTGATGTCGGAAGAGCACGAGCGCATGCGCTGATTGATCAGCTCAGTGCCCGTGAATCGG
TTGAGTTGCTGTGCGAAGCCTTTGAAGTACCTCGCTCGTGCTACTACAACCATCGCCTTAGACGGCGCAATCCAGACGTTGAGCGAGTCCGGCTACGCAG
CCGGGTCAACGAGCTGTTTACACAAAGTCGAAGCGCTGCCGGCAGCCGCAGCATCGTGTTGATGATGCATGAAGATGGCGAGCAGATTGGCCGGTTCAAG
GTACGTAGCCTGATGCGAGAGCTGGGATTGATCAGTAAGCAACCGGGATCGCATGCTTATAGAAAAGCGACGGTGGAGCGACCCGATATTCCGAATATTT
TGAATCGAGCATTCGATGTTCCAGCGCCCAATCAGGTGTGGTGCGGCGATATCACTTACATCTGGGCACAAGGGAAATGGCATTACCTGGCTGTGGTTAT
GGATCTTTTCGCGCGCCGAGTGGTGGGCTGGGCGTTATCGAGCAAACCGGATACTGATCTGGTAATCAAGGCGCTGGATATGGCCTACGAACAACGCGGC
AAGCCGCAGGGCCTGCTGTTTCACTCGGACCAGGGCGCCCAGTATGGCAGCCGACAATTTCGCCAGCGGCTTTGGCGATACCGCATACGCCAGAGCATGA
GTCGTCGTGGCAACTGCTGGGATAATGCGCCGATGGAGCGGGTGTTCCGGAGTTTGAAAACTGAGTGGATACCGACCGTGGGCTACATGACGGCCCAAGA
GGCTCAGCGAGACATCAGTCATTATCTGATGCATCGCTACAACTGGATTCGGCCACACCAGTTCAATAACGGACTGGCGCCAGCTCAGTCCGAAAAAAGA
CTTAACGTCGTGTCCGGGATCAGTTGACCACTACA
AAACGCGAGGCCGCAGGCCTCGTGCTCGATCAAGGCTATAGCCACATTGAGGCCTCTCGCTCGCTGGGAGTTGTCGAGTCCGCACTGCGTCGCTGGGTTA
ACCAGCTTCAACAGGAGCGCAACGGTGTCACTCCACAGAGCAAAGCCCTGACGCCCGAGCAGCAGAAAATTCAGGAGCTGGAAGCCCGGATTGCCCGTCT
TGAGCGGGAGAAATCCATTTTAAAAAAGGCTACCGCGCTCTTGATGTCGGAAGAGCACGAGCGCATGCGCTGATTGATCAGCTCAGTGCCCGTGAATCGG
TTGAGTTGCTGTGCGAAGCCTTTGAAGTACCTCGCTCGTGCTACTACAACCATCGCCTTAGACGGCGCAATCCAGACGTTGAGCGAGTCCGGCTACGCAG
CCGGGTCAACGAGCTGTTTACACAAAGTCGAAGCGCTGCCGGCAGCCGCAGCATCGTGTTGATGATGCATGAAGATGGCGAGCAGATTGGCCGGTTCAAG
GTACGTAGCCTGATGCGAGAGCTGGGATTGATCAGTAAGCAACCGGGATCGCATGCTTATAGAAAAGCGACGGTGGAGCGACCCGATATTCCGAATATTT
TGAATCGAGCATTCGATGTTCCAGCGCCCAATCAGGTGTGGTGCGGCGATATCACTTACATCTGGGCACAAGGGAAATGGCATTACCTGGCTGTGGTTAT
GGATCTTTTCGCGCGCCGAGTGGTGGGCTGGGCGTTATCGAGCAAACCGGATACTGATCTGGTAATCAAGGCGCTGGATATGGCCTACGAACAACGCGGC
AAGCCGCAGGGCCTGCTGTTTCACTCGGACCAGGGCGCCCAGTATGGCAGCCGACAATTTCGCCAGCGGCTTTGGCGATACCGCATACGCCAGAGCATGA
GTCGTCGTGGCAACTGCTGGGATAATGCGCCGATGGAGCGGGTGTTCCGGAGTTTGAAAACTGAGTGGATACCGACCGTGGGCTACATGACGGCCCAAGA
GGCTCAGCGAGACATCAGTCATTATCTGATGCATCGCTACAACTGGATTCGGCCACACCAGTTCAATAACGGACTGGCGCCAGCTCAGTCCGAAAAAAGA
CTTAACGTCGTGTCCGGGATCAGTTGACCACTACA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
309 bp | 102 aa | 65 | 373 | + | No |
Description : First part of the transposase
ORF sequence :
MTKQRRTFSAEFKREAAGLVLDQGYSHIEASRSLGVVESALRRWVNQLQQERNGVTPQSKALTPEQQKIQELEARIARLEREKSILKKATALLMSEEHER
MR
MR
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
924 bp | 307 aa | 304 | 1227 | + | No |
Description : Second part of the transposase
ORF sequence :
AGEIHFKKGYRALDVGRARAHALIDQLSARESVELLCEAFEVPRSCYYNHRLRRRNPDVERVRLRSRVNELFTQSRSAAGSRSIVLMMHEDGEQIGRFKV
RSLMRELGLISKQPGSHAYRKATVERPDIPNILNRAFDVPAPNQVWCGDITYIWAQGKWHYLAVVMDLFARRVVGWALSSKPDTDLVIKALDMAYEQRGK
PQGLLFHSDQGAQYGSRQFRQRLWRYRIRQSMSRRGNCWDNAPMERVFRSLKTEWIPTVGYMTAQEAQRDISHYLMHRYNWIRPHQFNNGLAPAQSEKRL
NVVSGIS
RSLMRELGLISKQPGSHAYRKATVERPDIPNILNRAFDVPAPNQVWCGDITYIWAQGKWHYLAVVMDLFARRVVGWALSSKPDTDLVIKALDMAYEQRGK
PQGLLFHSDQGAQYGSRQFRQRLWRYRIRQSMSRRGNCWDNAPMERVFRSLKTEWIPTVGYMTAQEAQRDISHYLMHRYNWIRPHQFNNGLAPAQSEKRL
NVVSGIS
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1163 bp | 387 aa | 65 | 1227 | + | Yes |
Chemistry : DDE
ORF sequence :
MTKQRRTFSAEFKREAAGLVLDQGYSHIEASRSLGVVESALRRWVNQLQQERNGVTPQSKALTPEQQKIQELEARIARLEREKSILKKGYRALDVGRARA
HALIDQLSARESVELLCEAFEVPRSCYYNHRLRRRNPDVERVRLRSRVNELFTQSRSAAGSRSIVLMMHEDGEQIGRFKVRSLMRELGLISKQPGSHAYR
KATVERPDIPNILNRAFDVPAPNQVWCGDITYIWAQGKWHYLAVVMDLFARRVVGWALSSKPDTDLVIKALDMAYEQRGKPQGLLFHSDQGAQYGSRQFR
QRLWRYRIRQSMSRRGNCWDNAPMERVFRSLKTEWIPTVGYMTAQEAQRDISHYLMHRYNWIRPHQFNNGLAPAQSEKRLNVVSGIS
HALIDQLSARESVELLCEAFEVPRSCYYNHRLRRRNPDVERVRLRSRVNELFTQSRSAAGSRSIVLMMHEDGEQIGRFKVRSLMRELGLISKQPGSHAYR
KATVERPDIPNILNRAFDVPAPNQVWCGDITYIWAQGKWHYLAVVMDLFARRVVGWALSSKPDTDLVIKALDMAYEQRGKPQGLLFHSDQGAQYGSRQFR
QRLWRYRIRQSMSRRGNCWDNAPMERVFRSLKTEWIPTVGYMTAQEAQRDISHYLMHRYNWIRPHQFNNGLAPAQSEKRLNVVSGIS
Blast result :
Comments
ISPsy24 is 89% aa similar to IS222.The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
Found in argK-tox gene cluster.
Found in argK-tox gene cluster.
References
1] Joardar,V., Lindeberg,M., Jackson,R.W., Selengut,J., Dodson,R., Brinkac,L.M., Daugherty,S.C., Deboy,R., Durkin,A.S., Giglio,M.G., Madupu,R., Nelson,W.C., Rosovitz,M.J., Sullivan,S., Crabtree,J., Creasy,T., Davidsen,T., Haft,D.H., Zafar,N., Zhou,L., Halpin,R., Holley,T., Khouri,H., Feldblyum,T., White,O., Fraser,C.M., Chatterjee,A.K., Cartinhour,S., Schneider,D.J., Mansfield,J., Collmer,A. and Buell,C.R. (2005) J. Bacteriol. 187 (18), 6488-6498.