ISDge16
- Family IS5
- Group IS427
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008010 | ND | Deinococcus geothermalis | Deinococcus geothermalis DSM 11300 Deinococcus geothermalis DSM 11300 plasmid 1 |
DNA section
IS Length : 928 bp
Ends
IR Length : 24/27
IRL : GGCGCTAGGGTCTGTCTGGCTGAATTTAGGAAAATGGGGGTATGGGACGG
IRR : GGGCCTAGGGTCTGTCTGGCTGAAGTTTTAGAGCCAGAGGAGGATGCAAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACTCCGCATAGTCA | GTTTCGGGGTGGGTGGCC | 0 |
DNA sequence
GGCGCTAGGGTCTGTCTGGCTGAATTTAGGAAAATGGGGGTATGGGACGGACGGATTTAACCGAGCAACAGTGGGTGAAATTGGCCCCCCTGCTGCCCGC
TCACCCCAAGCGAGGCCACGCCTACAAGGATCATCGGGTGGTCCTGAACGGCATCGTCTGGCGTCAGAAGACGGGGGCACCGTGGCGGGACATTCCAGAG
CGGTACGGGTCATGGCACACCTGTCATGACCGCTTCACCCGCTGGTCCCGTGATGGGACATGGGCGGCGATTCTCGCCGCCCTGCAACTGAAAGCGGATG
CTGAGGGAAAGATTGATTGGGAAGGTGCGGCAGTGGACAGCACCCACGTCAAAGCCCACCGCAGCGCGGTGGGCGCACGAAAAGAGCCGGCCAAGCTCGA
AAAAAGGGGGCCCTCGAAGACGAGTGGCTTGGCGTCAGTCGTGGAGGACGGACCACCAAAATCCACGTGTTGAGCGACGGCAACCGTCGTCCCCTGAGCG
TCCTGGTGTCTGCCGGGCAGGCGAGTGATCCCACGTACCTGGTGCCGCTTTTGGACGCTGTGCGAGTGGGGCGTCCCGGACCGGGACGCCCGCGGAAGCG
CCCCATCACGGTTCGGATGGACCGGGCCTATGGAGCACGGACCTACCGGCGTGCCCTGCGGGCACGCAAGATCAGGTGTGTCTGCCCTGAACGTCAGGAC
GCCCGCAAAGCTCGGCTGCGCAAGGGCAGCCGAGGTGGACGACCGCCCCAATTTGACGCACAAGCCTACAAAGGCCGTCAGGTCGTGGAATGTGGGATCA
ACCGGCTCAAGGATTTTCGGGCTCTTGCCACCCGGTACGAGAAGCGTGGATACCAGTTTTTAGCCGGTGTCCACGTCGCTTGCATCCTCCTCTGGCTCTA
AAACTTCAGCCAGACAGACCCTAGGCCC
TCACCCCAAGCGAGGCCACGCCTACAAGGATCATCGGGTGGTCCTGAACGGCATCGTCTGGCGTCAGAAGACGGGGGCACCGTGGCGGGACATTCCAGAG
CGGTACGGGTCATGGCACACCTGTCATGACCGCTTCACCCGCTGGTCCCGTGATGGGACATGGGCGGCGATTCTCGCCGCCCTGCAACTGAAAGCGGATG
CTGAGGGAAAGATTGATTGGGAAGGTGCGGCAGTGGACAGCACCCACGTCAAAGCCCACCGCAGCGCGGTGGGCGCACGAAAAGAGCCGGCCAAGCTCGA
AAAAAGGGGGCCCTCGAAGACGAGTGGCTTGGCGTCAGTCGTGGAGGACGGACCACCAAAATCCACGTGTTGAGCGACGGCAACCGTCGTCCCCTGAGCG
TCCTGGTGTCTGCCGGGCAGGCGAGTGATCCCACGTACCTGGTGCCGCTTTTGGACGCTGTGCGAGTGGGGCGTCCCGGACCGGGACGCCCGCGGAAGCG
CCCCATCACGGTTCGGATGGACCGGGCCTATGGAGCACGGACCTACCGGCGTGCCCTGCGGGCACGCAAGATCAGGTGTGTCTGCCCTGAACGTCAGGAC
GCCCGCAAAGCTCGGCTGCGCAAGGGCAGCCGAGGTGGACGACCGCCCCAATTTGACGCACAAGCCTACAAAGGCCGTCAGGTCGTGGAATGTGGGATCA
ACCGGCTCAAGGATTTTCGGGCTCTTGCCACCCGGTACGAGAAGCGTGGATACCAGTTTTTAGCCGGTGTCCACGTCGCTTGCATCCTCCTCTGGCTCTA
AAACTTCAGCCAGACAGACCCTAGGCCC
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
432 bp | 143 aa | 42 | 473 | + | No |
Description : First part of the transposase
ORF sequence :
MGRTDLTEQQWVKLAPLLPAHPKRGHAYKDHRVVLNGIVWRQKTGAPWRDIPERYGSWHTCHDRFTRWSRDGTWAAILAALQLKADAEGKIDWEGAAVDS
THVKAHRSAVGARKEPAKLEKRGPSKTSGLASVVEDGPPKSTC
THVKAHRSAVGARKEPAKLEKRGPSKTSGLASVVEDGPPKSTC
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
585 bp | 194 aa | 317 | 901 | + | No |
Description : Second part of the transposase
ORF sequence :
LGRCGSGQHPRQSPPQRGGRTKRAGQARKKGALEDEWLGVSRGGRTTKIHVLSDGNRRPLSVLVSAGQASDPTYLVPLLDAVRVGRPGPGRPRKRPITVR
MDRAYGARTYRRALRARKIRCVCPERQDARKARLRKGSRGGRPPQFDAQAYKGRQVVECGINRLKDFRALATRYEKRGYQFLAGVHVACILLWL
MDRAYGARTYRRALRARKIRCVCPERQDARKARLRKGSRGGRPPQFDAQAYKGRQVVECGINRLKDFRALATRYEKRGYQFLAGVHVACILLWL
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
860 bp | 286 aa | 42 | 901 | + | Yes |
Chemistry : DDE
ORF sequence :
MGRTDLTEQQWVKLAPLLPAHPKRGHAYKDHRVVLNGIVWRQKTGAPWRDIPERYGSWHTCHDRFTRWSRDGTWAAILAALQLKADAEGKIDWEGAAVDS
THVKAHRSAVGARKEPAKLEKKGALEDEWLGVSRGGRTTKIHVLSDGNRRPLSVLVSAGQASDPTYLVPLLDAVRVGRPGPGRPRKRPITVRMDRAYGAR
TYRRALRARKIRCVCPERQDARKARLRKGSRGGRPPQFDAQAYKGRQVVECGINRLKDFRALATRYEKRGYQFLAGVHVACILLWL
THVKAHRSAVGARKEPAKLEKKGALEDEWLGVSRGGRTTKIHVLSDGNRRPLSVLVSAGQASDPTYLVPLLDAVRVGRPGPGRPRKRPITVRMDRAYGAR
TYRRALRARKIRCVCPERQDARKARLRKGSRGGRPPQFDAQAYKGRQVVECGINRLKDFRALATRYEKRGYQFLAGVHVACILLWL
Blast result :
Comments
ISDge16 is 56% aa similar to ISMt1.The third ORF is a putative ORFAB tran,sposase reconstructed in silico by possible -1 frameshift.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Saunders,E., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Daly,M.J., Fredrickson,J.K., Makarova,K.S., Gaidamakova,E.K., Zhai,M. and Richardson,P. US DOE Joint Genome Institute. (2006) Direct submission GenBank.