ISDge15
- Family IS6
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_008010 | ND | Deinococcus geothermalis | Deinococcus geothermalis DSM 11300 plasmid 1 |
DNA section
IS Length : 747 bp
Ends
IR Length : 16/17
IRL : GGTTCTGGCAACTTAACGCAGGTAGGCTGGTGGGCTGTGACTGACCGCAA
IRR : GGTTCTGGCAATTTAACCTTAGCGGGGCCGCAGGAGCAGGGCTGCGGTTT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CGTAAGTGGCAGCGG | GCCGGGGCAGTCGCT | 0 |
DNA sequence
GGTTCTGGCAACTTAACGCAGGTAGGCTGGTGGGCTGTGACTGACCGCAAGCCCTACCGCCACCGTTTTCCCCTGAACGTCATCGGGTACGCCCTATGGC
TCTACCACCGCTTCCCCCTCAGCCAGCGGGACGTGCAGGAACTGCTCCACGAACGTGGTATTCAGGTCAGCCACGCAACTCTGCGCCAGTGGAACATGAA
ATTCGCGCCACTCCTCACCAAGGAACTGCGCCACCGAGAACCCCGGCGGGGTTCTCGGTGGCATCTGGACGAGGTGTGCGTCAAGGTCGGCGGGGTGAAG
CACTGGTTGTGGCGGGCAGTTGACGACCGTGGGGACGTGCTGGACATCCTCCTCCAGGAACACCGCGATACTGAAGCGGCCAAGTCCTTTTTCGTCCGCC
TGCTGAGCGAGTACGACGTCCCAGAGGTCATCCACACCGATAAGCTGTGGAGCTACGGGGCGGCCCCGCGGGAACTCCCCGTGCTCCGCACCGCGGAGCA
CGTCCAGGTCGTCTCGACCTCCCGCTGCAACAACCTCGTGGAACACTCGCATCGACCGACCCGGCAGCAGGAACGTGCTCAGCTCGGCTTCAAACGACGA
CCGCGAACCCAGGAATTCCTCGCCCCGCACGCCCGAGTCTCGAACCTTCACCGCCAGACCCGAACGACCGTTCCCGCCACCCACAGACGAAGGAATCAAA
CCGCAGCCCTGCTCCTGCGGCCCCGCTAAGGTTAAATTGCCAGAACC
TCTACCACCGCTTCCCCCTCAGCCAGCGGGACGTGCAGGAACTGCTCCACGAACGTGGTATTCAGGTCAGCCACGCAACTCTGCGCCAGTGGAACATGAA
ATTCGCGCCACTCCTCACCAAGGAACTGCGCCACCGAGAACCCCGGCGGGGTTCTCGGTGGCATCTGGACGAGGTGTGCGTCAAGGTCGGCGGGGTGAAG
CACTGGTTGTGGCGGGCAGTTGACGACCGTGGGGACGTGCTGGACATCCTCCTCCAGGAACACCGCGATACTGAAGCGGCCAAGTCCTTTTTCGTCCGCC
TGCTGAGCGAGTACGACGTCCCAGAGGTCATCCACACCGATAAGCTGTGGAGCTACGGGGCGGCCCCGCGGGAACTCCCCGTGCTCCGCACCGCGGAGCA
CGTCCAGGTCGTCTCGACCTCCCGCTGCAACAACCTCGTGGAACACTCGCATCGACCGACCCGGCAGCAGGAACGTGCTCAGCTCGGCTTCAAACGACGA
CCGCGAACCCAGGAATTCCTCGCCCCGCACGCCCGAGTCTCGAACCTTCACCGCCAGACCCGAACGACCGTTCCCGCCACCCACAGACGAAGGAATCAAA
CCGCAGCCCTGCTCCTGCGGCCCCGCTAAGGTTAAATTGCCAGAACC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 693 bp | 230 aa | 37 | 729 | + | No |
Chemistry : DDE
ORF sequence :
VTDRKPYRHRFPLNVIGYALWLYHRFPLSQRDVQELLHERGIQVSHATLRQWNMKFAPLLTKELRHREPRRGSRWHLDEVCVKVGGVKHWLWRAVDDRGD
VLDILLQEHRDTEAAKSFFVRLLSEYDVPEVIHTDKLWSYGAAPRELPVLRTAEHVQVVSTSRCNNLVEHSHRPTRQQERAQLGFKRRPRTQEFLAPHAR
VSNLHRQTRTTVPATHRRRNQTAALLLRPR
VLDILLQEHRDTEAAKSFFVRLLSEYDVPEVIHTDKLWSYGAAPRELPVLRTAEHVQVVSTSRCNNLVEHSHRPTRQQERAQLGFKRRPRTQEFLAPHAR
VSNLHRQTRTTVPATHRRRNQTAALLLRPR
Blast result :
Comments
ISDge15 is 58% aa similar to ISRH1.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Saunders,E., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Daly,M.J., Fredrickson,J.K., Makarova,K.S., Gaidamakova,E.K., Zhai,M. and Richardson,P. US DOE Joint Genome Institute. (2006) Direct submission GenBank.