ISDge13
- Family IS6
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_009939 | ND | Deinococcus geothermalis | Deinococcus geothermalis DSM 11300 plasmid pDGEO02 |
DNA section
IS Length : 806 bp
Ends
IR Length : 19
IRL : GGTTCTGTCAGGTTAAGTTCGGGTAGGCTGGTTTATCGTGCCTGCTGACC
IRR : GGTTCTGTCAGGTTAAGTTTTTGCGACGTTGACGGGGGCAGGGTGGCCTG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AATGTGTCAACA TGCGAGAG | CTACAAGC TGAGTCAGCCGT | 0 | |
| CAACTAATAGAA CCGCCAAG | CCAACGAC ACTGATGCCTTCA | 0 | |
| GCACTGCCCGCC CGCGAACG | CTCCGAGC TGCCGTCCCGGG | 0 | |
| CGCCGGTCGGCA GCCGCTGG | CTCCAGCC TCCAGGTGTCGC | 0 | |
| CACGCGCGGGCG GATTGAAG | AGCTGTAC AACATGCTCTCC | 0 | |
| ACAGCCCGGTGG AGCTGTAC | GCCGCTGG ACCCACAAGGCG | 0 | |
| CTCGAAACAACT CCCTACCA | GATTGAAG CCCTGCGGGACA | 0 |
DNA sequence
GGTTCTGTCAGGTTAAGTTCGGGTAGGCTGGTTTATCGTGCCTGCTGACCCGAAGCCCTATCGCCACCGTTTCCCCAAGAGCATCATCCAACACGCCGTT
TGGCTGTATCACCGCTTCCCTCTCAGCTACCGAGATGTTGAAGAATTGCTGCTCCAACGCGGAATTCAAGTCAGTCACGAAACAATTCGTGACTGGTGCG
ATAAGTTCGGCCCCACCATCACCAAGGAATTGAAGAAACGGGAACCCCATCGGGGTTCCCATTGGCACCTGGATGAAGTCTGCGTCAAGATCAAGGGCGT
CAAGCACTGGTTGTGGCGTGCCGTGGACGAGCATGGCGCTGTGCTGGATGTTCTTCTGCAAGAACACCGCGACACTGAGGCGGCCAAGATGTTCTTCACT
ATGTTGCTGAGCAACTACGAGGCTCCAACCACCATCCACACCGACAAACTGGGCAGTTACAGAGCAGCCATTCGTGAGATTCCTGAACTTCATGGTGCGC
TGCACCGTGAAGTGATTTCGACGGCCAGGTGCAACAATTTGATTGAACAGTCGCACCGACCGACACGAAATCAGGAACGAAGCCAGAAAGGCTTCAAGGG
CATAGAGAACACACAGAAATTCCTTGATCTACACGCCAGAACCAGCAATCTCCACCAGTTCACGCGAACGACCGTGACCGCCAAAACGAGACGAAGCAAC
CAGAGAACCGCTTTTCAAACCTGGAACGAGGTTGCGCTGCTCGCAGCCTGACCAATCAGGCCACCCTGCCCCCGTCAACGTCGCAAAAACTTAACCTGAC
AGAACC
TGGCTGTATCACCGCTTCCCTCTCAGCTACCGAGATGTTGAAGAATTGCTGCTCCAACGCGGAATTCAAGTCAGTCACGAAACAATTCGTGACTGGTGCG
ATAAGTTCGGCCCCACCATCACCAAGGAATTGAAGAAACGGGAACCCCATCGGGGTTCCCATTGGCACCTGGATGAAGTCTGCGTCAAGATCAAGGGCGT
CAAGCACTGGTTGTGGCGTGCCGTGGACGAGCATGGCGCTGTGCTGGATGTTCTTCTGCAAGAACACCGCGACACTGAGGCGGCCAAGATGTTCTTCACT
ATGTTGCTGAGCAACTACGAGGCTCCAACCACCATCCACACCGACAAACTGGGCAGTTACAGAGCAGCCATTCGTGAGATTCCTGAACTTCATGGTGCGC
TGCACCGTGAAGTGATTTCGACGGCCAGGTGCAACAATTTGATTGAACAGTCGCACCGACCGACACGAAATCAGGAACGAAGCCAGAAAGGCTTCAAGGG
CATAGAGAACACACAGAAATTCCTTGATCTACACGCCAGAACCAGCAATCTCCACCAGTTCACGCGAACGACCGTGACCGCCAAAACGAGACGAAGCAAC
CAGAGAACCGCTTTTCAAACCTGGAACGAGGTTGCGCTGCTCGCAGCCTGACCAATCAGGCCACCCTGCCCCCGTCAACGTCGCAAAAACTTAACCTGAC
AGAACC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 714 bp | 237 aa | 38 | 751 | + | No |
Chemistry : DDE
ORF sequence :
MPADPKPYRHRFPKSIIQHAVWLYHRFPLSYRDVEELLLQRGIQVSHETIRDWCDKFGPTITKELKKREPHRGSHWHLDEVCVKIKGVKHWLWRAVDEHG
AVLDVLLQEHRDTEAAKMFFTMLLSNYEAPTTIHTDKLGSYRAAIREIPELHGALHREVISTARCNNLIEQSHRPTRNQERSQKGFKGIENTQKFLDLHA
RTSNLHQFTRTTVTAKTRRSNQRTAFQTWNEVALLAA
AVLDVLLQEHRDTEAAKMFFTMLLSNYEAPTTIHTDKLGSYRAAIREIPELHGALHREVISTARCNNLIEQSHRPTRNQERSQKGFKGIENTQKFLDLHA
RTSNLHQFTRTTVTAKTRRSNQRTAFQTWNEVALLAA
Blast result :
Comments
ISDge13 is 59% aa similar to ISRH1.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Saunders,E., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Daly,M.J., Fredrickson,J.K., Makarova,K.S., Gaidamakova,E.K., Zhai,M. and Richardson,P. US DOE Joint Genome Institute. (2006) Direct submission GenBank.